Wall clock time and date at job start Sun Mar 29 2020 23:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.23164 * 2 1 4 4 C 1.53147 * 109.19909 * 119.40128 * 2 1 3 5 5 C 1.51485 * 108.37524 * 204.43264 * 4 2 1 6 6 O 1.21278 * 120.04879 * 110.02011 * 5 4 2 7 7 N 1.33631 * 119.89849 * 289.99724 * 5 4 2 8 8 C 1.47258 * 120.10520 * 359.76062 * 7 5 4 9 9 C 1.53018 * 108.58322 * 70.66843 * 8 7 5 10 10 N 1.45566 * 110.85571 * 274.28153 * 9 8 7 11 11 C 1.46902 * 110.99755 * 300.52970 * 10 9 8 12 12 C 1.52998 * 109.47361 * 298.15259 * 11 10 9 13 13 C 1.52993 * 109.47559 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47629 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00340 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99870 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47346 * 270.00105 * 18 16 14 20 20 H 1.48504 * 109.47005 * 150.00284 * 18 16 14 21 21 H 1.48496 * 109.47166 * 30.00337 * 18 16 14 22 22 H 1.08997 * 109.47749 * 179.42038 * 1 2 3 23 23 H 1.09002 * 109.47198 * 299.41946 * 1 2 3 24 24 H 1.09005 * 109.46964 * 59.41722 * 1 2 3 25 25 H 1.08998 * 109.68014 * 324.15605 * 4 2 1 26 26 H 1.09003 * 109.68207 * 84.67029 * 4 2 1 27 27 H 0.97000 * 119.94599 * 179.74432 * 7 5 4 28 28 H 1.09000 * 109.62081 * 190.38872 * 8 7 5 29 29 H 1.08994 * 109.62065 * 310.75954 * 8 7 5 30 30 H 1.08991 * 109.20376 * 153.91977 * 9 8 7 31 31 H 1.08997 * 109.19197 * 34.62816 * 9 8 7 32 32 H 1.08997 * 109.47099 * 178.15205 * 11 10 9 33 33 H 1.08995 * 109.46881 * 58.15124 * 11 10 9 34 34 H 1.09004 * 109.47391 * 59.99749 * 12 11 10 35 35 H 1.09002 * 109.47087 * 300.00471 * 12 11 10 36 36 H 1.09004 * 109.47183 * 59.99366 * 13 12 11 37 37 H 1.09011 * 109.46879 * 300.00069 * 13 12 11 38 38 H 0.96999 * 120.00653 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8890 1.0292 0.0000 4 6 2.0336 -0.7100 1.2600 5 6 3.4267 -0.2021 1.5698 6 8 3.6147 0.5025 2.5389 7 7 4.4483 -0.5318 0.7740 8 6 4.2224 -1.3919 -0.3998 9 6 3.4415 -0.5939 -1.4461 10 7 2.0095 -0.6753 -1.1973 11 6 1.5468 -2.0689 -1.2368 12 6 1.7980 -2.6505 -2.6295 13 6 1.3154 -4.1017 -2.6709 14 6 1.5635 -4.6747 -4.0425 15 1 2.0193 -4.0646 -4.8083 16 6 1.2085 -5.9779 -4.3198 17 7 0.6530 -6.7206 -3.3874 18 14 1.5153 -6.6878 -6.0201 19 1 0.3294 -6.4436 -6.8799 20 1 1.7547 -8.1493 -5.9105 21 1 2.7057 -6.0350 -6.6217 22 1 -0.3634 -1.0275 -0.0104 23 1 -0.3634 0.5048 0.8952 24 1 -0.3633 0.5229 -0.8848 25 1 1.3687 -0.4909 2.0954 26 1 2.0643 -1.7859 1.0877 27 1 5.3400 -0.2039 0.9696 28 1 5.1808 -1.7017 -0.8164 29 1 3.6502 -2.2713 -0.1044 30 1 3.6566 -0.9946 -2.4366 31 1 3.7533 0.4498 -1.4068 32 1 0.4801 -2.1040 -1.0155 33 1 2.0911 -2.6536 -0.4954 34 1 2.8647 -2.6154 -2.8509 35 1 1.2537 -2.0657 -3.3711 36 1 0.2487 -4.1364 -2.4497 37 1 1.8595 -4.6868 -1.9293 38 1 0.4933 -6.3519 -2.5046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371203381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:44 Heat of formation + Delta-G solvation = -44.535091 kcal Electronic energy + Delta-G solvation = -17922.672251 eV Core-core repulsion = 15185.519806 eV Total energy + Delta-G solvation = -2737.152445 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72513 -38.16468 -35.10837 -34.35346 -32.68784 -30.94621 -28.20890 -27.84390 -26.15716 -23.71387 -22.86065 -20.96088 -19.95682 -19.26320 -17.42549 -16.99136 -16.61071 -16.07642 -15.33068 -15.00673 -14.12448 -13.95524 -13.73947 -13.37796 -13.21241 -12.92457 -12.74042 -12.50994 -11.94744 -11.74700 -11.42317 -11.39427 -11.36955 -10.85666 -10.75079 -10.59812 -10.14483 -9.93853 -9.75612 -9.74193 -9.51226 -8.56163 -8.33739 -8.02715 -6.37320 -4.06497 2.50914 3.16160 3.42684 3.45716 3.61436 3.84364 4.32583 4.53490 4.77854 4.84051 4.90592 4.96870 5.14245 5.18238 5.36785 5.39971 5.44544 5.52880 5.68145 5.74612 5.83483 5.94706 5.99406 6.09962 6.24472 6.50300 6.58414 6.63632 6.91658 7.03280 7.21071 7.34204 7.39488 7.52278 8.09313 8.21107 8.45758 8.87737 9.65797 11.03335 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038692 B = 0.005049 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.491258 B = 5544.781181 C = 5783.236204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.103 3.897 3 H 0.079 0.921 4 C -0.180 4.180 5 C 0.520 3.480 6 O -0.557 6.557 7 N -0.725 5.725 8 C 0.062 3.938 9 C 0.047 3.953 10 N -0.549 5.549 11 C 0.046 3.954 12 C -0.098 4.098 13 C 0.009 3.991 14 C -0.600 4.600 15 H 0.049 0.951 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 1.070 2.930 19 H -0.288 1.288 20 H -0.285 1.285 21 H -0.289 1.289 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.398 0.602 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.006 0.994 37 H 0.004 0.996 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.472 12.052 5.982 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.006 4.006 3 H 0.097 0.903 4 C -0.222 4.222 5 C 0.307 3.693 6 O -0.436 6.436 7 N -0.377 5.377 8 C -0.064 4.064 9 C -0.082 4.082 10 N -0.272 5.272 11 C -0.080 4.080 12 C -0.136 4.136 13 C -0.029 4.029 14 C -0.638 4.638 15 H 0.067 0.933 16 C -0.190 4.190 17 N -0.551 5.551 18 Si 0.899 3.101 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.215 1.215 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.234 0.766 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.022 0.978 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.999 11.226 5.158 12.986 hybrid contribution 0.994 0.990 1.613 2.137 sum 4.993 12.216 6.771 14.833 Atomic orbital electron populations 1.21943 0.93286 1.02886 1.02254 1.21222 0.96355 0.97541 0.85474 0.90262 1.22879 0.93857 1.03185 1.02302 1.20675 0.87491 0.79518 0.81622 1.90724 1.85464 1.38671 1.28713 1.46064 1.11081 1.52141 1.28436 1.22678 1.02754 0.94368 0.86561 1.22328 0.86293 1.00494 0.99129 1.60041 1.13062 1.17268 1.36791 1.22469 1.00464 0.85914 0.99192 1.21545 1.00445 0.98108 0.93545 1.19200 0.95520 0.90686 0.97479 1.22067 1.44489 0.99813 0.97458 0.93309 1.25838 0.94047 0.94145 1.04932 1.70756 1.40452 1.39176 1.04730 0.83524 0.76232 0.75997 0.74365 1.21454 1.21055 1.21507 0.91713 0.92116 0.91293 0.88053 0.88676 0.76580 0.88876 0.89648 0.88368 0.90655 0.90366 0.94892 0.93205 0.92335 0.97543 0.97820 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.87 37.16 0.33 -1.25 16 2 C 0.10 1.22 2.56 -68.35 -0.17 1.04 16 3 H 0.08 0.95 7.87 -51.93 -0.41 0.55 16 4 C -0.18 -2.15 4.92 -27.42 -0.13 -2.29 16 5 C 0.52 7.04 7.10 -11.11 -0.08 6.96 16 6 O -0.56 -9.54 17.93 5.56 0.10 -9.44 16 7 N -0.72 -7.99 5.31 -59.76 -0.32 -8.31 16 8 C 0.06 0.65 6.37 -3.62 -0.02 0.63 16 9 C 0.05 0.53 5.33 -4.54 -0.02 0.51 16 10 N -0.55 -7.11 4.35 -228.70 -0.99 -8.10 16 11 C 0.05 0.69 3.96 -3.82 -0.02 0.68 16 12 C -0.10 -1.86 4.96 -26.74 -0.13 -2.00 16 13 C 0.01 0.21 4.28 -27.89 -0.12 0.09 16 14 C -0.60 -16.64 9.11 -34.44 -0.31 -16.95 16 15 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 16 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 17 N -0.91 -27.64 13.65 55.43 0.76 -26.88 16 18 Si 1.07 24.94 29.90 -169.99 -5.08 19.86 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H 0.06 0.73 6.12 -51.93 -0.32 0.42 16 23 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.10 1.15 7.88 -51.93 -0.41 0.74 16 26 H 0.10 1.15 5.21 -51.93 -0.27 0.88 16 27 H 0.40 3.83 8.92 -40.82 -0.36 3.46 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.02 4.87 -51.93 -0.25 0.77 16 30 H 0.10 1.17 6.35 -51.93 -0.33 0.84 16 31 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 32 H 0.08 1.20 5.71 -51.93 -0.30 0.90 16 33 H 0.03 0.49 4.57 -51.93 -0.24 0.25 16 34 H 0.05 0.91 6.46 -51.93 -0.34 0.57 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 37 H 0.00 0.09 8.01 -51.92 -0.42 -0.33 16 38 H 0.27 8.04 7.22 -40.82 -0.29 7.74 16 LS Contribution 290.86 15.07 4.38 4.38 Total: -1.00 -31.97 290.86 -7.60 -39.57 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.66 Total: 1.20 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.78 Total: -12.28 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.55 Total: -43.29 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.10 Total: -9.44 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.97 -7.60 -39.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371203381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.967 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds