Wall clock time and date at job start Sun Mar 29 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46728 * 2 1 4 4 N 1.46899 * 109.46831 * 183.99185 * 3 2 1 5 5 C 1.46898 * 111.00335 * 298.85822 * 4 3 2 6 6 C 1.50708 * 109.46935 * 288.65149 * 5 4 3 7 7 N 1.34780 * 119.99678 * 176.04907 * 6 5 4 8 8 O 1.21274 * 119.99879 * 356.05343 * 6 5 4 9 9 C 1.46893 * 111.00148 * 62.81719 * 4 3 2 10 10 C 1.53002 * 109.47524 * 75.34416 * 9 4 3 11 11 C 1.50697 * 115.54519 * 54.59482 * 10 9 4 12 12 H 1.08001 * 120.00349 * 271.65584 * 11 10 9 13 13 C 1.37881 * 119.99866 * 91.39003 * 11 10 9 14 14 N 1.31515 * 120.00162 * 173.55986 * 13 11 10 15 15 Si 1.86802 * 119.99881 * 353.55776 * 13 11 10 16 16 H 1.48505 * 109.46788 * 93.83501 * 15 13 11 17 17 H 1.48497 * 109.47030 * 213.83370 * 15 13 11 18 18 H 1.48496 * 109.46944 * 333.83664 * 15 13 11 19 19 C 1.52998 * 117.50271 * 200.26627 * 10 9 4 20 20 C 1.52998 * 117.49986 * 268.92904 * 10 9 4 21 21 H 1.09000 * 109.46803 * 64.87871 * 1 2 3 22 22 H 1.09002 * 109.46641 * 184.87189 * 1 2 3 23 23 H 1.08999 * 109.47028 * 304.87230 * 1 2 3 24 24 H 1.08993 * 109.47241 * 240.00329 * 2 1 3 25 25 H 1.08994 * 109.47331 * 119.99587 * 2 1 3 26 26 H 1.09004 * 109.46952 * 63.99531 * 3 2 1 27 27 H 1.09002 * 109.47448 * 303.99631 * 3 2 1 28 28 H 1.09001 * 109.46972 * 48.64980 * 5 4 3 29 29 H 1.08995 * 109.47193 * 168.65251 * 5 4 3 30 30 H 0.97003 * 119.99888 * 359.97438 * 7 6 5 31 31 H 0.96993 * 119.99919 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47183 * 315.34749 * 9 4 3 33 33 H 1.09000 * 109.47299 * 195.34528 * 9 4 3 34 34 H 0.97002 * 120.00140 * 174.99406 * 14 13 11 35 35 H 1.08997 * 117.50161 * 215.00831 * 19 10 9 36 36 H 1.09006 * 117.49518 * 0.02588 * 19 10 9 37 37 H 1.09001 * 117.49913 * 359.97201 * 20 10 9 38 38 H 1.08999 * 117.49699 * 144.97074 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5058 1.4437 -0.0964 5 6 4.1095 0.7545 1.0518 6 6 3.9455 1.6004 2.2884 7 7 4.3543 1.1320 3.4842 8 8 3.4456 2.7023 2.2073 9 6 3.9506 0.8461 -1.3624 10 6 3.7165 1.8372 -2.5044 11 6 4.3345 3.1991 -2.3198 12 1 3.7848 3.9772 -1.8111 13 6 5.6041 3.4502 -2.7955 14 7 6.0947 4.6695 -2.7486 15 14 6.6273 2.0585 -3.5065 16 1 6.4419 2.0102 -4.9791 17 1 8.0609 2.2891 -3.1953 18 1 6.1924 0.7698 -2.9103 19 6 3.6564 1.2754 -3.9262 20 6 2.3774 1.7629 -3.2408 21 1 -0.3633 0.4363 -0.9305 22 1 -0.3633 -1.0240 0.0873 23 1 -0.3633 0.5876 0.8431 24 1 1.8934 -0.5137 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 1.7362 1.9353 0.9237 27 1 1.6193 1.9767 -0.8520 28 1 3.6153 -0.2056 1.2002 29 1 5.1702 0.5916 0.8612 30 1 4.7537 0.2504 3.5490 31 1 4.2484 1.6762 4.2801 32 1 3.3854 -0.0664 -1.5518 33 1 5.0126 0.6092 -1.2991 34 1 7.0127 4.8336 -3.0154 35 1 4.0639 1.8909 -4.7282 36 1 3.7832 0.1997 -4.0481 37 1 1.6634 1.0078 -2.9121 38 1 1.9434 2.6993 -3.5915 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389601173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:37 Heat of formation + Delta-G solvation = -3.342790 kcal Electronic energy + Delta-G solvation = -18326.120457 eV Core-core repulsion = 15590.754244 eV Total energy + Delta-G solvation = -2735.366212 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.46293 -37.79590 -35.60924 -33.38385 -32.42785 -31.84954 -27.88728 -26.66138 -25.20818 -23.13844 -21.65785 -21.17605 -19.70018 -18.61787 -17.05918 -16.53959 -15.99414 -15.43313 -15.23302 -14.53205 -14.09480 -13.88173 -13.80099 -13.42872 -13.04075 -12.62539 -12.26151 -11.71176 -11.62216 -11.51388 -11.34971 -11.05932 -10.99582 -10.39831 -10.33292 -10.19391 -10.01432 -9.59592 -9.44277 -9.37547 -8.82390 -8.39165 -8.31678 -7.42542 -5.88942 -3.85782 3.02019 3.37917 3.46707 3.48851 3.65632 4.52921 4.58061 5.05050 5.14733 5.21001 5.24476 5.37055 5.48333 5.50926 5.63233 5.81862 5.88040 5.98528 6.06233 6.11471 6.19802 6.25857 6.28255 6.34432 6.53521 6.62915 6.77734 6.81695 6.97764 7.15620 7.25676 7.45500 7.74059 7.83482 7.98279 8.62211 8.76726 9.21930 9.74791 11.24341 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020313 B = 0.009644 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.094960 B = 2902.768929 C = 3686.301669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.169 4.169 3 C 0.056 3.944 4 N -0.488 5.488 5 C 0.030 3.970 6 C 0.514 3.486 7 N -0.867 5.867 8 O -0.511 6.511 9 C 0.090 3.910 10 C 0.015 3.985 11 C -0.449 4.449 12 H 0.080 0.920 13 C 0.071 3.929 14 N -0.904 5.904 15 Si 0.876 3.124 16 H -0.283 1.283 17 H -0.298 1.298 18 H -0.263 1.263 19 C -0.205 4.205 20 C -0.184 4.184 21 H 0.056 0.944 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.396 0.604 31 H 0.397 0.603 32 H 0.018 0.982 33 H 0.066 0.934 34 H 0.260 0.740 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 -13.296 8.488 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C -0.072 4.072 4 N -0.209 5.209 5 C -0.102 4.102 6 C 0.298 3.702 7 N -0.433 5.433 8 O -0.384 6.384 9 C -0.038 4.038 10 C 0.014 3.986 11 C -0.487 4.487 12 H 0.098 0.902 13 C -0.129 4.129 14 N -0.543 5.543 15 Si 0.705 3.295 16 H -0.210 1.210 17 H -0.225 1.225 18 H -0.188 1.188 19 C -0.243 4.243 20 C -0.222 4.222 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.223 0.777 31 H 0.227 0.773 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.349 -11.946 8.116 15.401 hybrid contribution 0.718 -1.875 -0.015 2.008 sum -4.631 -13.821 8.102 16.676 Atomic orbital electron populations 1.21643 0.95720 1.00834 1.01969 1.22283 0.96539 1.00635 1.01358 1.22323 0.87308 0.93825 1.03749 1.61575 1.06741 1.52943 0.99647 1.22036 1.01981 0.94954 0.91209 1.20761 0.77294 0.87449 0.84674 1.43925 1.67295 1.22176 1.09919 1.90761 1.41756 1.20232 1.85644 1.22006 0.98911 0.93722 0.89112 1.19358 0.96041 0.96246 0.86945 1.20167 1.00525 0.93208 1.34814 0.90188 1.24935 0.97788 0.94769 0.95416 1.69920 1.15182 1.19397 1.49803 0.86950 0.79061 0.84069 0.79464 1.20972 1.22499 1.18766 1.22971 1.03788 0.98426 0.99073 1.22874 0.91013 1.01180 1.07101 0.92521 0.93455 0.92880 0.91650 0.92835 0.90672 0.89527 0.92579 0.88330 0.77697 0.77319 0.96372 0.91522 0.93010 0.89447 0.91352 0.91350 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.91 37.16 0.37 -1.37 16 2 C -0.17 -2.35 5.31 -26.73 -0.14 -2.49 16 3 C 0.06 0.99 4.90 -3.82 -0.02 0.97 16 4 N -0.49 -9.53 3.94 -236.07 -0.93 -10.46 16 5 C 0.03 0.46 5.30 -4.97 -0.03 0.44 16 6 C 0.51 8.21 7.76 -10.98 -0.09 8.13 16 7 N -0.87 -9.07 8.87 31.22 0.28 -8.79 16 8 O -0.51 -10.84 15.80 5.56 0.09 -10.75 16 9 C 0.09 1.81 4.58 -3.83 -0.02 1.79 16 10 C 0.02 0.36 0.70 -155.66 -0.11 0.25 16 11 C -0.45 -12.79 9.11 -34.44 -0.31 -13.10 16 12 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 13 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 14 N -0.90 -28.45 13.95 55.43 0.77 -27.68 16 15 Si 0.88 21.94 24.92 -169.99 -4.24 17.70 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.26 -6.09 5.60 56.52 0.32 -5.77 16 19 C -0.20 -4.39 7.60 -26.69 -0.20 -4.59 16 20 C -0.18 -3.78 8.51 -26.69 -0.23 -4.01 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.94 6.01 -51.93 -0.31 0.63 16 25 H 0.05 0.68 6.40 -51.93 -0.33 0.35 16 26 H 0.07 1.40 6.48 -51.93 -0.34 1.06 16 27 H 0.09 1.67 6.25 -51.93 -0.32 1.34 16 28 H 0.06 0.70 5.90 -51.93 -0.31 0.40 16 29 H 0.10 1.44 7.70 -51.93 -0.40 1.04 16 30 H 0.40 2.74 8.83 -40.82 -0.36 2.38 16 31 H 0.40 3.73 8.93 -40.82 -0.36 3.37 16 32 H 0.02 0.33 5.66 -51.93 -0.29 0.03 16 33 H 0.07 1.39 6.06 -51.93 -0.31 1.08 16 34 H 0.26 7.72 8.32 -40.82 -0.34 7.38 16 35 H 0.09 2.00 7.12 -51.93 -0.37 1.63 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 38 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 296.86 15.07 4.47 4.47 Total: -1.00 -34.27 296.86 -6.31 -40.58 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.89 Total: 6.92 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.87 Total: -12.00 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.12 Total: -46.93 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.24 Total: 17.70 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.27 -6.31 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389601173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.239 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds