Wall clock time and date at job start Sun Mar 29 2020 22:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 N 1.46503 * 109.47495 * 120.00262 * 2 1 3 5 5 C 1.34771 * 120.00053 * 154.99932 * 4 2 1 6 6 O 1.21585 * 120.00249 * 5.06496 * 5 4 2 7 7 N 1.34783 * 120.00055 * 185.06596 * 5 4 2 8 8 C 1.47209 * 120.81062 * 355.11797 * 7 5 4 9 9 C 1.53188 * 108.85300 * 126.33685 * 8 7 5 10 10 C 1.53034 * 109.31583 * 54.64875 * 9 8 7 11 11 C 1.53041 * 109.53940 * 298.63433 * 10 9 8 12 12 H 1.09003 * 109.49632 * 301.41168 * 11 10 9 13 13 C 1.50693 * 109.52539 * 181.33437 * 11 10 9 14 14 H 1.07999 * 120.00216 * 0.13923 * 13 11 10 15 15 C 1.37882 * 119.99965 * 180.14798 * 13 11 10 16 16 N 1.31507 * 120.00038 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 120.00038 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47258 * 89.99438 * 17 15 13 19 19 H 1.48493 * 109.47173 * 209.99989 * 17 15 13 20 20 H 1.48503 * 109.46820 * 329.99686 * 17 15 13 21 21 C 1.46920 * 120.63031 * 174.97073 * 7 5 4 22 22 H 1.09003 * 109.46946 * 299.99450 * 1 2 3 23 23 H 1.08998 * 109.47250 * 59.99980 * 1 2 3 24 24 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47110 * 240.00087 * 2 1 3 26 26 H 1.08998 * 109.47074 * 300.00128 * 3 2 1 27 27 H 1.09003 * 109.46760 * 60.00436 * 3 2 1 28 28 H 1.08998 * 109.46764 * 179.97438 * 3 2 1 29 29 H 0.97003 * 119.99661 * 335.00060 * 4 2 1 30 30 H 1.08997 * 109.53182 * 6.52817 * 8 7 5 31 31 H 1.09005 * 109.55567 * 246.15572 * 8 7 5 32 32 H 1.09001 * 109.49603 * 294.69084 * 9 8 7 33 33 H 1.09001 * 109.49412 * 174.60034 * 9 8 7 34 34 H 1.09002 * 109.46168 * 178.61340 * 10 9 8 35 35 H 1.09004 * 109.44888 * 58.64919 * 10 9 8 36 36 H 0.97001 * 120.00167 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.59056 * 113.82706 * 21 7 5 38 38 H 1.08997 * 109.59200 * 353.53695 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9739 -1.1206 0.2346 7 7 3.6492 -1.9814 2.2563 8 6 2.8212 -2.0727 3.4699 9 6 2.6001 -3.5503 3.8084 10 6 3.9553 -4.2524 3.9194 11 6 4.6868 -4.1684 2.5778 12 1 4.0777 -4.6320 1.8017 13 6 6.0069 -4.8881 2.6779 14 1 6.2953 -5.3608 3.6052 15 6 6.8468 -4.9430 1.5858 16 7 6.4956 -4.3677 0.4566 17 14 8.4836 -5.8346 1.7102 18 1 8.3019 -7.2585 1.3297 19 1 9.4645 -5.1987 0.7945 20 1 8.9856 -5.7553 3.1056 21 6 4.9316 -2.6978 2.2253 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8901 28 1 3.1300 1.4425 0.0005 29 1 1.4623 -0.7388 1.9894 30 1 1.8599 -1.5906 3.2923 31 1 3.3317 -1.5805 4.2978 32 1 2.0106 -4.0196 3.0208 33 1 2.0699 -3.6307 4.7573 34 1 3.8017 -5.2985 4.1844 35 1 4.5537 -3.7666 4.6903 36 1 7.0863 -4.4067 -0.3118 37 1 5.6142 -2.2568 2.9518 38 1 5.3650 -2.6284 1.2277 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397593564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:58 Heat of formation + Delta-G solvation = -40.782017 kcal Electronic energy + Delta-G solvation = -18125.537288 eV Core-core repulsion = 15388.547589 eV Total energy + Delta-G solvation = -2736.989699 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.70182 -37.10544 -35.39243 -33.38074 -31.86491 -30.64120 -29.52191 -27.14631 -25.03233 -24.41345 -21.81737 -21.21290 -19.93797 -18.76198 -17.42364 -16.17134 -15.88631 -14.84287 -14.55536 -14.14920 -14.05756 -13.67691 -13.41015 -13.13903 -12.61877 -12.45202 -12.29764 -12.14290 -12.00894 -11.79488 -11.26466 -10.96864 -10.92662 -10.77516 -10.46181 -10.34787 -10.18662 -9.83689 -9.36614 -9.06403 -8.91163 -8.66874 -8.37741 -7.58091 -5.94698 -4.03741 3.29119 3.35925 3.41284 3.43521 3.93600 4.41937 4.50284 4.96251 5.16573 5.27788 5.34783 5.37456 5.53405 5.60575 5.65064 5.76218 5.81642 5.96445 6.01877 6.16570 6.21588 6.34838 6.40462 6.62881 6.70989 6.85546 6.97805 7.03341 7.12400 7.40376 7.57276 7.79892 7.97933 8.11542 8.45328 8.67642 8.99919 9.34673 9.61667 11.10373 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031100 B = 0.006683 C = 0.005794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.092774 B = 4188.509160 C = 4831.353721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 C -0.162 4.162 4 N -0.754 5.754 5 C 0.701 3.299 6 O -0.584 6.584 7 N -0.624 5.624 8 C 0.116 3.884 9 C -0.133 4.133 10 C -0.110 4.110 11 C 0.039 3.961 12 H 0.028 0.972 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.879 5.879 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.129 3.871 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.388 0.612 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.263 0.737 37 H 0.037 0.963 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.942 7.903 3.656 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 C -0.221 4.221 4 N -0.413 5.413 5 C 0.402 3.598 6 O -0.462 6.462 7 N -0.361 5.361 8 C -0.008 4.008 9 C -0.172 4.172 10 C -0.147 4.147 11 C 0.020 3.980 12 H 0.046 0.954 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.516 5.516 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.008 3.992 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.224 0.776 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.305 8.024 2.735 14.130 hybrid contribution 0.557 -0.497 0.500 0.898 sum -10.748 7.527 3.235 13.515 Atomic orbital electron populations 1.22068 0.94815 1.02381 1.02330 1.20673 0.92951 0.92597 0.88875 1.22201 1.02604 0.96158 1.01119 1.45464 1.17904 1.61208 1.16713 1.15968 0.81543 0.78762 0.83491 1.90906 1.54482 1.65770 1.35024 1.47849 1.23463 1.51448 1.13365 1.21529 0.93850 0.97189 0.88251 1.21943 0.99468 0.95389 1.00360 1.21611 0.93912 0.98690 1.00522 1.18990 0.95495 0.92039 0.91491 0.95417 1.21071 1.02641 1.34529 0.97742 0.92410 1.25059 0.98262 0.95342 0.95382 1.69894 1.36952 1.42965 1.01834 0.86599 0.83771 0.79752 0.77906 1.20728 1.21200 1.19925 1.22149 0.79975 0.91742 1.05287 0.92459 0.91253 0.92100 0.89723 0.92248 0.93057 0.91781 0.77588 0.92185 0.92205 0.92213 0.92388 0.93108 0.93214 0.92678 0.94412 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.38 37.16 0.35 -1.18 16 2 C 0.15 2.11 3.15 -67.93 -0.21 1.89 16 3 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 4 N -0.75 -11.74 4.99 -58.67 -0.29 -12.04 16 5 C 0.70 14.79 8.26 -86.92 -0.72 14.07 16 6 O -0.58 -15.02 15.45 5.29 0.08 -14.94 16 7 N -0.62 -12.97 2.98 -178.27 -0.53 -13.50 16 8 C 0.12 1.83 6.44 -3.56 -0.02 1.81 16 9 C -0.13 -2.16 6.08 -26.62 -0.16 -2.32 16 10 C -0.11 -2.21 5.11 -26.69 -0.14 -2.34 16 11 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 12 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.52 -14.31 8.57 -34.44 -0.30 -14.60 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.88 -26.10 11.39 55.43 0.63 -25.47 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.13 3.23 5.38 -3.71 -0.02 3.21 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.37 7.65 -51.92 -0.40 0.97 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 29 H 0.39 4.93 6.08 -40.82 -0.25 4.69 16 30 H 0.06 0.75 5.59 -51.93 -0.29 0.46 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.12 3.57 5.14 -51.93 -0.27 3.31 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -32.10 301.39 -8.00 -40.09 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.24 Total: 3.55 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.17 Total: 1.28 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.19 Total: -51.01 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.08 Total: -14.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.10 -8.00 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397593564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.690 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds