Wall clock time and date at job start Sun Mar 29 2020 22:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47307 * 2 1 4 4 N 1.46500 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99664 * 180.02562 * 4 3 2 6 6 O 1.21579 * 120.00394 * 4.98216 * 5 4 3 7 7 N 1.34782 * 119.99971 * 184.98679 * 5 4 3 8 8 C 1.46928 * 120.62925 * 354.76182 * 7 5 4 9 9 C 1.53184 * 108.89692 * 233.52206 * 8 7 5 10 10 C 1.53078 * 109.29479 * 305.57893 * 9 8 7 11 11 C 1.53042 * 109.65463 * 61.15451 * 10 9 8 12 12 H 1.08998 * 109.49921 * 58.65509 * 11 10 9 13 13 C 1.50699 * 109.49173 * 178.74692 * 11 10 9 14 14 H 1.08003 * 120.00625 * 359.84130 * 13 11 10 15 15 C 1.37884 * 119.99631 * 179.83624 * 13 11 10 16 16 N 1.31510 * 120.00076 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99717 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47061 * 90.00305 * 17 15 13 19 19 H 1.48500 * 109.46856 * 209.99959 * 17 15 13 20 20 H 1.48496 * 109.47252 * 330.00173 * 17 15 13 21 21 C 1.46917 * 120.63344 * 174.75040 * 7 5 4 22 22 H 1.08996 * 109.47560 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47411 * 300.00264 * 1 2 3 24 24 H 1.09001 * 109.47281 * 59.99724 * 1 2 3 25 25 H 1.09001 * 109.47016 * 240.00098 * 2 1 3 26 26 H 1.09001 * 109.47281 * 120.00276 * 2 1 3 27 27 H 1.09001 * 109.47003 * 60.00089 * 3 2 1 28 28 H 1.09001 * 109.47176 * 300.00341 * 3 2 1 29 29 H 0.96995 * 120.00077 * 0.02562 * 4 3 2 30 30 H 1.09007 * 109.58594 * 353.38776 * 8 7 5 31 31 H 1.09006 * 109.58195 * 113.65821 * 8 7 5 32 32 H 1.08997 * 109.49909 * 65.39169 * 9 8 7 33 33 H 1.09001 * 109.49532 * 185.48518 * 9 8 7 34 34 H 1.09003 * 109.34539 * 301.13037 * 10 9 8 35 35 H 1.08995 * 109.43884 * 181.23681 * 10 9 8 36 36 H 0.96998 * 119.99728 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.59125 * 246.19698 * 21 7 5 38 38 H 1.08999 * 109.58791 * 6.61964 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1788 2.6096 0.0012 6 8 3.5744 3.6605 0.0927 7 7 5.5229 2.6118 -0.0996 8 6 6.2760 1.3502 -0.0958 9 6 7.3543 1.4195 0.9900 10 6 8.2136 2.6672 0.7706 11 6 7.3392 3.9190 0.8733 12 1 6.8638 3.9513 1.8536 13 6 8.1940 5.1461 0.6874 14 1 9.2554 5.0441 0.5159 15 6 7.6209 6.3993 0.7361 16 7 6.3285 6.5236 0.9454 17 14 8.6803 7.9203 0.5050 18 1 8.7326 8.2727 -0.9367 19 1 8.0963 9.0512 1.2700 20 1 10.0541 7.6463 0.9977 21 6 6.2627 3.8758 -0.2158 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9899 0.6024 0.0006 30 1 5.5994 0.5215 0.1133 31 1 6.7455 1.2021 -1.0683 32 1 6.8807 1.4740 1.9702 33 1 7.9812 0.5294 0.9373 34 1 8.6691 2.6225 -0.2187 35 1 8.9954 2.7071 1.5290 36 1 5.9255 7.4052 0.9800 37 1 6.7333 3.9349 -1.1972 38 1 5.5776 4.7135 -0.0858 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397609859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:59 Heat of formation + Delta-G solvation = -43.706333 kcal Electronic energy + Delta-G solvation = -17834.025032 eV Core-core repulsion = 15096.908525 eV Total energy + Delta-G solvation = -2737.116507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.64278 -36.97796 -35.38800 -33.43106 -32.25081 -31.47418 -29.66549 -26.31289 -25.00278 -23.87030 -21.85763 -21.56095 -19.99818 -18.67390 -17.43615 -16.18957 -15.75292 -15.61883 -14.65076 -14.34572 -14.11295 -13.67082 -13.47386 -13.08991 -12.75125 -12.55417 -12.47420 -12.13268 -11.94993 -11.82416 -11.18475 -10.95525 -10.95206 -10.84381 -10.47891 -10.35691 -10.18834 -9.82863 -9.37723 -9.05218 -8.89526 -8.66942 -8.37722 -7.57902 -5.93433 -4.02949 3.29566 3.35808 3.41568 3.43929 3.91659 4.42858 4.51051 4.81245 4.89518 5.13835 5.32810 5.36180 5.52600 5.55870 5.59607 5.64738 5.70029 5.92466 6.00177 6.09487 6.13417 6.20074 6.35113 6.62805 6.71568 6.85122 6.90783 7.03443 7.09946 7.40966 7.56760 7.80113 7.98412 8.11988 8.45943 8.65868 9.00825 9.33019 9.62442 11.11419 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.005902 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.612430 B = 4743.405126 C = 5433.427465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 C 0.138 3.862 4 N -0.759 5.759 5 C 0.698 3.302 6 O -0.583 6.583 7 N -0.624 5.624 8 C 0.116 3.884 9 C -0.134 4.134 10 C -0.109 4.109 11 C 0.039 3.961 12 H 0.028 0.972 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.878 5.878 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.128 3.872 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.389 0.611 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.263 0.737 37 H 0.038 0.962 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 -14.491 -2.326 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.013 3.987 4 N -0.419 5.419 5 C 0.400 3.600 6 O -0.460 6.460 7 N -0.361 5.361 8 C -0.008 4.008 9 C -0.172 4.172 10 C -0.147 4.147 11 C 0.020 3.980 12 H 0.047 0.953 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.515 5.515 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.008 3.992 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.225 0.775 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.225 -13.529 -2.259 15.063 hybrid contribution 0.818 0.349 -0.114 0.897 sum -5.407 -13.180 -2.373 14.443 Atomic orbital electron populations 1.21668 0.94792 1.01772 1.02382 1.21729 0.96709 0.96441 1.02393 1.21127 0.79354 0.96090 1.02090 1.45366 1.06662 1.07530 1.82352 1.15981 0.82120 0.83713 0.78221 1.90924 1.67509 1.30350 1.57192 1.47782 1.03586 1.08663 1.76022 1.21472 0.94092 0.86157 0.99100 1.21953 0.97482 0.99161 0.98606 1.21616 0.97966 0.94796 1.00321 1.18983 0.92281 0.91484 0.95273 0.95345 1.21077 0.94262 0.90286 1.50437 0.92411 1.25064 0.94970 0.99109 0.94899 1.69906 1.09744 1.23637 1.48261 0.86605 0.80516 0.82806 0.78132 1.20664 1.21235 1.19967 1.22171 0.95634 0.83460 0.97979 0.92472 0.92335 0.92387 0.91582 0.91526 0.91939 0.92146 0.77490 0.92218 0.92252 0.92233 0.92332 0.93241 0.93099 0.92677 0.94323 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.15 0.37 -0.84 16 2 C -0.13 -1.26 6.05 -26.73 -0.16 -1.42 16 3 C 0.14 1.87 5.68 -4.04 -0.02 1.85 16 4 N -0.76 -11.90 5.46 -65.23 -0.36 -12.26 16 5 C 0.70 14.94 8.29 -86.92 -0.72 14.22 16 6 O -0.58 -15.30 15.77 5.30 0.08 -15.22 16 7 N -0.62 -13.04 2.97 -178.51 -0.53 -13.57 16 8 C 0.12 1.84 6.38 -3.71 -0.02 1.81 16 9 C -0.13 -2.19 6.09 -26.60 -0.16 -2.35 16 10 C -0.11 -2.21 5.10 -26.67 -0.14 -2.35 16 11 C 0.04 0.99 2.26 -91.65 -0.21 0.78 16 12 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.52 -14.39 8.56 -34.44 -0.29 -14.68 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.88 -26.22 11.39 55.43 0.63 -25.59 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.13 3.21 5.41 -3.72 -0.02 3.19 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.39 4.91 5.96 -40.82 -0.24 4.66 16 30 H 0.06 0.75 5.65 -51.92 -0.29 0.45 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.12 3.61 5.11 -51.93 -0.27 3.35 16 LS Contribution 302.26 15.07 4.55 4.55 Total: -1.00 -32.61 302.26 -8.38 -40.99 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.26 Total: 2.68 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.48 Total: 1.89 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.26 Total: -51.42 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.08 Total: -15.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.61 -8.38 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397609859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.718 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds