Wall clock time and date at job start Sun Mar 29 2020 22:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47307 * 2 1 4 4 N 1.46500 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99664 * 180.02562 * 4 3 2 6 6 O 1.21579 * 120.00394 * 4.98216 * 5 4 3 7 7 N 1.34782 * 119.99971 * 184.98679 * 5 4 3 8 8 C 1.46928 * 120.62925 * 354.76182 * 7 5 4 9 9 C 1.53184 * 108.89692 * 233.52206 * 8 7 5 10 10 C 1.53078 * 109.29479 * 305.57893 * 9 8 7 11 11 C 1.53042 * 109.65463 * 61.15451 * 10 9 8 12 12 H 1.08998 * 109.49921 * 58.65509 * 11 10 9 13 13 C 1.50699 * 109.49173 * 178.74692 * 11 10 9 14 14 H 1.08003 * 120.00625 * 359.84130 * 13 11 10 15 15 C 1.37884 * 119.99631 * 179.83624 * 13 11 10 16 16 N 1.31510 * 120.00076 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99717 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47061 * 90.00305 * 17 15 13 19 19 H 1.48500 * 109.46856 * 209.99959 * 17 15 13 20 20 H 1.48496 * 109.47252 * 330.00173 * 17 15 13 21 21 C 1.46917 * 120.63344 * 174.75040 * 7 5 4 22 22 H 1.08996 * 109.47560 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47411 * 300.00264 * 1 2 3 24 24 H 1.09001 * 109.47281 * 59.99724 * 1 2 3 25 25 H 1.09001 * 109.47016 * 240.00098 * 2 1 3 26 26 H 1.09001 * 109.47281 * 120.00276 * 2 1 3 27 27 H 1.09001 * 109.47003 * 60.00089 * 3 2 1 28 28 H 1.09001 * 109.47176 * 300.00341 * 3 2 1 29 29 H 0.96995 * 120.00077 * 0.02562 * 4 3 2 30 30 H 1.09007 * 109.58594 * 353.38776 * 8 7 5 31 31 H 1.09006 * 109.58195 * 113.65821 * 8 7 5 32 32 H 1.08997 * 109.49909 * 65.39169 * 9 8 7 33 33 H 1.09001 * 109.49532 * 185.48518 * 9 8 7 34 34 H 1.09003 * 109.34539 * 301.13037 * 10 9 8 35 35 H 1.08995 * 109.43884 * 181.23681 * 10 9 8 36 36 H 0.96998 * 119.99728 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.59125 * 246.19698 * 21 7 5 38 38 H 1.08999 * 109.58791 * 6.61964 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1788 2.6096 0.0012 6 8 3.5744 3.6605 0.0927 7 7 5.5229 2.6118 -0.0996 8 6 6.2760 1.3502 -0.0958 9 6 7.3543 1.4195 0.9900 10 6 8.2136 2.6672 0.7706 11 6 7.3392 3.9190 0.8733 12 1 6.8638 3.9513 1.8536 13 6 8.1940 5.1461 0.6874 14 1 9.2554 5.0441 0.5159 15 6 7.6209 6.3993 0.7361 16 7 6.3285 6.5236 0.9454 17 14 8.6803 7.9203 0.5050 18 1 8.7326 8.2727 -0.9367 19 1 8.0963 9.0512 1.2700 20 1 10.0541 7.6463 0.9977 21 6 6.2627 3.8758 -0.2158 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9899 0.6024 0.0006 30 1 5.5994 0.5215 0.1133 31 1 6.7455 1.2021 -1.0683 32 1 6.8807 1.4740 1.9702 33 1 7.9812 0.5294 0.9373 34 1 8.6691 2.6225 -0.2187 35 1 8.9954 2.7071 1.5290 36 1 5.9255 7.4052 0.9800 37 1 6.7333 3.9349 -1.1972 38 1 5.5776 4.7135 -0.0858 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397609859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:59 Heat of formation + Delta-G solvation = -65.788267 kcal Electronic energy + Delta-G solvation = -17834.982576 eV Core-core repulsion = 15096.908525 eV Total energy + Delta-G solvation = -2738.074051 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26732 -38.58851 -36.69185 -35.31840 -33.77542 -32.89344 -31.45213 -27.61619 -26.85889 -25.40182 -23.46180 -22.54691 -21.69306 -20.27317 -19.03226 -18.20914 -17.27380 -16.82355 -16.54727 -15.77368 -15.49519 -15.20482 -15.12649 -14.54984 -14.31627 -14.01999 -13.77029 -13.56108 -13.31568 -12.89248 -12.85744 -12.63229 -12.28600 -12.22749 -11.99296 -11.83615 -11.72669 -11.61614 -11.22122 -10.94562 -10.81907 -10.51493 -10.15455 -9.24537 -8.08731 -6.26946 1.41577 1.41916 1.53182 1.82329 2.24178 2.42978 3.07786 3.20959 3.92883 4.06327 4.10740 4.17381 4.29919 4.38484 4.61089 4.69807 4.71971 4.77596 4.81655 4.84583 4.91836 5.11321 5.15535 5.27576 5.27814 5.28220 5.32266 5.40477 5.56782 5.60704 5.66860 5.90324 5.99508 6.18926 6.37017 6.86812 7.15702 7.43322 7.69751 8.94403 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.005902 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.612430 B = 4743.405126 C = 5433.427465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.134 3.866 4 N -0.735 5.735 5 C 0.689 3.311 6 O -0.643 6.643 7 N -0.628 5.628 8 C 0.109 3.891 9 C -0.126 4.126 10 C -0.104 4.104 11 C 0.037 3.963 12 H -0.017 1.017 13 C -0.537 4.537 14 H 0.063 0.937 15 C 0.008 3.992 16 N -0.916 5.916 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.262 1.262 21 C 0.141 3.859 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.409 0.591 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.107 0.893 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.259 0.741 37 H 0.035 0.965 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -17.374 -2.967 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C 0.010 3.990 4 N -0.395 5.395 5 C 0.390 3.610 6 O -0.525 6.525 7 N -0.364 5.364 8 C -0.013 4.013 9 C -0.164 4.164 10 C -0.142 4.142 11 C 0.018 3.982 12 H 0.001 0.999 13 C -0.575 4.575 14 H 0.082 0.918 15 C -0.191 4.191 16 N -0.555 5.555 17 Si 0.784 3.216 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.186 1.186 21 C 0.018 3.982 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.248 0.752 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.247 -16.507 -2.903 17.563 hybrid contribution 0.499 1.207 0.099 1.310 sum -4.748 -15.300 -2.804 16.263 Atomic orbital electron populations 1.21686 0.93853 1.02999 1.02100 1.21674 0.97345 0.93063 1.03837 1.21325 0.77900 0.99166 1.00653 1.45151 1.07441 1.06396 1.80481 1.16297 0.82301 0.84395 0.77999 1.90880 1.68804 1.33023 1.59771 1.47694 1.03761 1.09217 1.75763 1.21872 0.94525 0.84646 1.00221 1.21921 0.97500 0.98905 0.98088 1.21505 0.97658 0.94143 1.00903 1.18922 0.92775 0.93740 0.92791 0.99895 1.21537 0.94819 0.91503 1.49659 0.91837 1.25938 0.95994 1.02522 0.94668 1.70122 1.11736 1.23879 1.49726 0.85538 0.79135 0.78682 0.78202 1.19953 1.21421 1.18566 1.21578 0.94723 0.84361 0.97495 0.90412 0.92863 0.92591 0.89853 0.90232 0.93888 0.93330 0.75211 0.88100 0.90081 0.93416 0.87506 0.92289 0.93019 0.93211 0.94644 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.12 -1.92 6.05 30.59 0.19 -1.74 16 3 C 0.13 3.54 5.68 86.38 0.49 4.03 16 4 N -0.73 -22.00 5.46 -478.54 -2.62 -24.61 16 5 C 0.69 29.87 8.29 179.05 1.49 31.36 16 6 O -0.64 -35.61 15.77 -3.97 -0.06 -35.68 16 7 N -0.63 -26.18 2.97 -836.93 -2.49 -28.67 16 8 C 0.11 3.10 6.38 86.36 0.55 3.65 16 9 C -0.13 -3.71 6.09 30.68 0.19 -3.53 16 10 C -0.10 -4.07 5.10 30.63 0.16 -3.92 16 11 C 0.04 1.93 2.26 -11.46 -0.03 1.90 16 12 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 13 C -0.54 -30.20 8.56 25.60 0.22 -29.98 16 14 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 15 C 0.01 0.46 5.30 84.66 0.45 0.91 16 16 N -0.92 -57.49 11.39 21.45 0.24 -57.25 16 17 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 21 C 0.14 7.34 5.41 86.36 0.47 7.80 16 22 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.41 8.86 5.96 -92.71 -0.55 8.31 16 30 H 0.10 2.03 5.65 -2.38 -0.01 2.01 16 31 H 0.08 2.02 8.14 -2.38 -0.02 2.01 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 4.63 5.11 -2.39 -0.01 4.62 16 Total: -1.00 -76.99 302.26 2.46 -74.53 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.48 Total: 15.44 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 4.88 Total: 9.13 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.86 Total: -110.53 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.06 Total: -35.68 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -76.99 2.46 -74.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397609859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.744 kcal (2) G-P(sol) polarization free energy of solvation -76.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds