Wall clock time and date at job start Sun Mar 29 2020 22:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.05842 * 2 1 4 4 C 1.54264 * 110.03090 * 121.41116 * 2 1 3 5 5 C 1.54897 * 104.19493 * 142.89700 * 4 2 1 6 6 C 1.54889 * 102.74591 * 322.05796 * 5 4 2 7 7 C 1.53873 * 110.03450 * 238.58189 * 2 1 3 8 8 H 1.08997 * 110.07421 * 0.02562 * 7 2 1 9 9 N 1.46494 * 110.03677 * 121.43331 * 7 2 1 10 10 C 1.34776 * 120.00306 * 203.62284 * 9 7 2 11 11 O 1.21585 * 119.99883 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00173 * 179.97438 * 10 9 7 13 13 C 1.46501 * 120.00153 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47560 * 179.97438 * 13 12 10 15 15 C 1.50697 * 109.47440 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99818 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00315 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99345 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00309 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47004 * 59.99688 * 19 17 15 21 21 H 1.48492 * 109.47235 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47098 * 300.00242 * 19 17 15 23 23 H 1.08997 * 109.47390 * 300.04059 * 1 2 3 24 24 H 1.09000 * 109.47137 * 60.04459 * 1 2 3 25 25 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 26 26 H 1.08998 * 110.49036 * 24.22157 * 4 2 1 27 27 H 1.09000 * 110.49063 * 261.57197 * 4 2 1 28 28 H 1.09000 * 110.75568 * 80.37108 * 5 4 2 29 29 H 1.09003 * 110.75125 * 203.55592 * 5 4 2 30 30 H 1.08998 * 110.48466 * 156.62292 * 6 5 4 31 31 H 1.09000 * 110.48547 * 279.12998 * 6 5 4 32 32 H 0.97004 * 120.00244 * 23.61480 * 9 7 2 33 33 H 0.97004 * 120.00377 * 359.97438 * 12 10 9 34 34 H 1.08999 * 109.47201 * 300.00028 * 13 12 10 35 35 H 1.09003 * 109.47002 * 60.00066 * 13 12 10 36 36 H 1.08999 * 109.47258 * 300.00448 * 14 13 12 37 37 H 1.09003 * 109.46538 * 60.00236 * 14 13 12 38 38 H 0.97006 * 119.99463 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0583 -0.7554 1.2369 5 6 3.3137 -1.5007 0.7192 6 6 2.8874 -1.9406 -0.7034 7 6 2.0571 -0.7536 -1.2337 8 1 1.2235 -1.1192 -1.8332 9 7 2.9033 0.1309 -2.0384 10 6 3.0824 -0.1182 -3.3508 11 8 2.5419 -1.0773 -3.8667 12 7 3.8605 0.6958 -4.0912 13 6 4.0556 0.4247 -5.5176 14 6 4.9738 1.4908 -6.1185 15 6 5.1749 1.2116 -7.5857 16 1 4.6955 0.3592 -8.0438 17 6 5.9711 2.0443 -8.3432 18 7 6.5545 3.0826 -7.7853 19 14 6.2199 1.6986 -10.1619 20 1 4.9071 1.7286 -10.8556 21 1 7.1111 2.7332 -10.7451 22 1 6.8385 0.3592 -10.3311 23 1 -0.3634 0.5144 0.8896 24 1 -0.3633 0.5131 -0.8904 25 1 -0.3634 -1.0276 0.0005 26 1 1.3142 -1.4659 1.5967 27 1 2.3296 -0.0535 2.0255 28 1 4.1709 -0.8289 0.6752 29 1 3.5344 -2.3658 1.3445 30 1 3.7637 -2.1038 -1.3307 31 1 2.2791 -2.8439 -0.6571 32 1 3.3348 0.8960 -1.6267 33 1 4.2915 1.4613 -3.6797 34 1 4.5098 -0.5583 -5.6418 35 1 3.0920 0.4468 -6.0267 36 1 4.5193 2.4737 -5.9943 37 1 5.9374 1.4692 -5.6095 38 1 7.1150 3.6683 -8.3182 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407960601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:29 Heat of formation + Delta-G solvation = -83.709859 kcal Electronic energy + Delta-G solvation = -17044.998111 eV Core-core repulsion = 14306.146921 eV Total energy + Delta-G solvation = -2738.851190 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24217 -39.25284 -36.54898 -34.90621 -34.45834 -32.11714 -31.43440 -28.61668 -26.71478 -25.59909 -23.03890 -22.29232 -21.20204 -20.95683 -19.12993 -18.40981 -17.66480 -16.68958 -16.48986 -16.14060 -15.95125 -15.15052 -14.94934 -14.87207 -14.45423 -14.26482 -13.76457 -13.22917 -13.20271 -12.93741 -12.54214 -12.48017 -12.36036 -12.18127 -11.89887 -11.70459 -11.63500 -11.55770 -11.50111 -11.43595 -11.15331 -10.59765 -10.28206 -9.68117 -8.23721 -6.34162 1.42130 1.44772 1.52600 1.80346 2.18315 2.41956 3.10985 3.40041 3.56335 3.70954 3.96518 4.32303 4.46479 4.47813 4.51562 4.52818 4.61831 4.68957 4.75701 4.86050 4.98181 4.98388 5.03081 5.16446 5.25968 5.30782 5.31532 5.37334 5.51179 5.52327 5.59325 5.71696 5.79433 6.08005 6.17645 6.78666 7.15992 7.35127 7.63132 8.88060 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.055383 B = 0.003733 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.449436 B = 7498.531839 C = 7511.748863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.087 0.913 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.136 4.136 7 C 0.156 3.844 8 H 0.064 0.936 9 N -0.726 5.726 10 C 0.696 3.304 11 O -0.641 6.641 12 N -0.735 5.735 13 C 0.161 3.839 14 C 0.025 3.975 15 C -0.549 4.549 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.408 0.592 33 H 0.406 0.594 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.262 -4.513 20.026 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.106 0.894 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.175 4.175 7 C 0.051 3.949 8 H 0.082 0.918 9 N -0.382 5.382 10 C 0.396 3.604 11 O -0.523 6.523 12 N -0.389 5.389 13 C 0.036 3.964 14 C -0.013 4.013 15 C -0.587 4.587 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.193 1.193 23 H 0.094 0.906 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.245 0.755 33 H 0.242 0.758 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.649 -5.227 19.516 21.977 hybrid contribution 0.725 0.615 -0.954 1.346 sum -7.924 -4.612 18.563 20.703 Atomic orbital electron populations 1.21845 0.93782 1.02258 1.02130 1.22031 0.96668 0.99901 0.92928 0.89432 1.22439 0.96940 0.99191 0.96338 1.22489 0.98165 1.00511 0.94512 1.22773 0.99364 0.97922 0.97485 1.21658 0.91908 0.89943 0.91355 0.91807 1.45191 1.53877 1.32664 1.06447 1.16229 0.79615 0.82378 0.82198 1.90847 1.55510 1.32898 1.73065 1.45230 1.52129 1.31156 1.10412 1.21054 0.98528 0.98602 0.78176 1.19117 0.93801 0.93351 0.95007 1.21444 1.30099 1.11923 0.95237 0.92333 1.25872 0.95019 0.94620 1.03605 1.70056 1.32320 1.16053 1.38161 0.85490 0.78393 0.78133 0.78990 1.19343 1.20501 1.19342 0.90627 0.93710 0.92309 0.90441 0.89772 0.91460 0.90456 0.93727 0.90823 0.75521 0.75837 0.94016 0.93982 0.97290 0.97320 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.84 71.98 0.64 -1.41 16 2 C -0.10 -1.46 3.27 -10.07 -0.03 -1.50 16 3 H 0.09 1.19 7.60 -2.38 -0.02 1.17 16 4 C -0.11 -1.33 6.36 31.67 0.20 -1.13 16 5 C -0.12 -1.78 6.91 31.89 0.22 -1.56 16 6 C -0.14 -2.96 6.53 31.67 0.21 -2.75 16 7 C 0.16 3.58 2.88 45.72 0.13 3.72 16 8 H 0.06 1.81 7.14 -2.39 -0.02 1.79 16 9 N -0.73 -18.62 5.05 -454.37 -2.29 -20.91 16 10 C 0.70 25.23 8.56 179.06 1.53 26.76 16 11 O -0.64 -28.92 16.02 -3.98 -0.06 -28.99 16 12 N -0.73 -26.86 5.56 -478.55 -2.66 -29.52 16 13 C 0.16 7.23 5.61 86.38 0.48 7.72 16 14 C 0.02 1.28 5.09 29.85 0.15 1.43 16 15 C -0.55 -31.17 9.11 25.60 0.23 -30.94 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.01 0.43 5.46 84.66 0.46 0.89 16 18 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 19 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.83 7.85 -2.39 -0.02 0.81 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 1.20 8.04 -2.39 -0.02 1.18 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.41 7.89 8.31 -92.70 -0.77 7.12 16 33 H 0.41 12.54 8.49 -92.70 -0.79 11.76 16 34 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 38 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -69.09 312.42 1.00 -68.09 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -0.52 Total: 18.49 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 4.23 Total: 1.23 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -4.67 Total: -104.85 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.06 Total: -28.99 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.09 1.00 -68.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407960601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.620 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds