Wall clock time and date at job start Sun Mar 29 2020 22:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43148 * 2 1 4 4 C 1.54886 * 110.59642 * 237.38070 * 2 1 3 5 5 C 1.54894 * 102.74786 * 203.31997 * 4 2 1 6 6 C 1.54261 * 104.19298 * 37.94570 * 5 4 2 7 7 C 1.53879 * 106.60254 * 336.38647 * 6 5 4 8 8 H 1.08994 * 110.07464 * 240.69698 * 7 6 5 9 9 N 1.46503 * 110.03084 * 119.28352 * 7 6 5 10 10 C 1.34771 * 119.99567 * 87.83833 * 9 7 6 11 11 O 1.21586 * 120.00768 * 359.97438 * 10 9 7 12 12 N 1.34783 * 119.99706 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99826 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46968 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47207 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99603 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99838 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 H 1.09002 * 109.46620 * 297.45663 * 1 2 3 24 24 H 1.08992 * 109.47440 * 57.45651 * 1 2 3 25 25 H 1.09008 * 109.46976 * 177.46445 * 1 2 3 26 26 H 1.08995 * 110.76133 * 321.63536 * 4 2 1 27 27 H 1.09002 * 110.75447 * 84.82876 * 4 2 1 28 28 H 1.09003 * 110.48714 * 156.62318 * 5 4 2 29 29 H 1.09001 * 110.49052 * 279.13419 * 5 4 2 30 30 H 1.09008 * 110.03481 * 217.10106 * 6 5 4 31 31 H 1.09004 * 110.03539 * 95.67434 * 6 5 4 32 32 H 0.96997 * 119.99893 * 267.83601 * 9 7 6 33 33 H 0.96996 * 120.00038 * 0.02562 * 12 10 9 34 34 H 1.08993 * 109.47363 * 60.00084 * 13 12 10 35 35 H 1.09006 * 109.47292 * 299.99606 * 13 12 10 36 36 H 1.09005 * 109.47493 * 59.99941 * 14 13 12 37 37 H 1.08998 * 109.47006 * 299.99905 * 14 13 12 38 38 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0749 -0.7816 -1.2212 5 6 3.4938 -1.1947 -0.7572 6 6 3.3185 -1.5369 0.7367 7 6 2.0699 -0.7773 1.2183 8 1 2.3382 -0.0834 2.0149 9 7 1.0600 -1.7244 1.6971 10 6 1.0739 -2.1320 2.9816 11 8 1.9248 -1.7143 3.7430 12 7 0.1444 -3.0030 3.4223 13 6 0.1599 -3.4466 4.8184 14 6 -0.9918 -4.4256 5.0552 15 6 -0.9756 -4.8825 6.4912 16 1 -0.2192 -4.5119 7.1672 17 6 -1.9257 -5.7743 6.9417 18 7 -2.8464 -6.2259 6.1183 19 14 -1.9060 -6.3400 8.7218 20 1 -0.7778 -5.6895 9.4355 21 1 -1.7376 -7.8147 8.7708 22 1 -3.1865 -5.9661 9.3743 23 1 -0.3633 0.4739 0.9120 24 1 -0.3634 0.5528 -0.8662 25 1 -0.3633 -1.0267 -0.0455 26 1 1.4628 -1.6608 -1.4216 27 1 2.1248 -0.1389 -2.1002 28 1 3.8369 -2.0685 -1.3111 29 1 4.1920 -0.3669 -0.8817 30 1 4.1936 -1.2116 1.2995 31 1 3.1730 -2.6102 0.8594 32 1 0.3813 -2.0579 1.0897 33 1 -0.5342 -3.3366 2.8149 34 1 0.0449 -2.5842 5.4750 35 1 1.1071 -3.9420 5.0318 36 1 -0.8764 -5.2881 4.3986 37 1 -1.9391 -3.9306 4.8417 38 1 -2.8568 -5.9319 5.1940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407960603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:33 Heat of formation + Delta-G solvation = -60.285732 kcal Electronic energy + Delta-G solvation = -17200.665694 eV Core-core repulsion = 14462.830251 eV Total energy + Delta-G solvation = -2737.835444 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.11456 -38.21406 -34.95466 -33.46256 -32.88947 -31.48961 -29.41437 -27.49771 -25.23864 -24.13573 -21.59867 -20.85597 -20.70670 -19.49090 -18.35241 -16.61363 -16.12881 -15.54511 -15.20260 -14.84980 -14.20635 -14.03041 -13.80893 -13.66779 -13.27998 -12.96063 -12.47725 -12.16983 -11.88822 -11.60793 -11.31615 -11.14131 -10.98964 -10.92524 -10.80417 -10.68733 -10.40479 -10.14281 -9.98073 -9.81667 -8.97820 -8.67740 -8.43009 -8.27903 -6.42655 -4.12122 3.07107 3.44277 3.47544 3.58557 3.62159 4.26520 4.43240 4.49327 4.58404 4.70262 5.04951 5.18807 5.23793 5.31075 5.35764 5.40568 5.48268 5.53338 5.66025 5.74074 5.85452 5.95205 6.04531 6.06148 6.18329 6.22775 6.29897 6.65398 6.74726 6.92648 7.17211 7.38681 7.40515 8.10694 8.40432 8.41580 8.82038 8.99690 9.59815 10.98639 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052418 B = 0.003937 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.042546 B = 7109.700449 C = 7311.422891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.136 4.136 7 C 0.163 3.837 8 H 0.088 0.912 9 N -0.745 5.745 10 C 0.698 3.302 11 O -0.598 6.598 12 N -0.742 5.742 13 C 0.148 3.852 14 C -0.001 4.001 15 C -0.601 4.601 16 H 0.054 0.946 17 C 0.017 3.983 18 N -0.912 5.912 19 Si 1.077 2.923 20 H -0.288 1.288 21 H -0.287 1.287 22 H -0.286 1.286 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.393 0.607 33 H 0.391 0.609 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.757 10.961 -16.092 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.175 4.175 7 C 0.057 3.943 8 H 0.107 0.893 9 N -0.403 5.403 10 C 0.397 3.603 11 O -0.476 6.476 12 N -0.396 5.396 13 C 0.025 3.975 14 C -0.038 4.038 15 C -0.639 4.639 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.548 5.548 19 Si 0.905 3.095 20 H -0.214 1.214 21 H -0.213 1.213 22 H -0.213 1.213 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.229 0.771 33 H 0.224 0.776 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.768 10.370 -14.236 19.250 hybrid contribution 0.161 0.616 -1.712 1.826 sum 7.930 10.985 -15.948 20.926 Atomic orbital electron populations 1.21732 0.94599 1.01665 1.02036 1.22275 0.96156 0.99530 0.94378 0.89660 1.22596 0.96353 0.99741 0.97151 1.22350 0.96907 1.01042 0.95891 1.22636 0.98230 1.01194 0.95455 1.21360 0.87019 0.90098 0.95778 0.89340 1.45403 1.34847 1.49974 1.10082 1.16100 0.82324 0.79832 0.82000 1.90881 1.39985 1.61238 1.55544 1.45540 1.32225 1.47630 1.14175 1.21402 1.00493 0.97755 0.77835 1.19462 0.92580 0.93445 0.98323 1.21951 1.16982 1.29982 0.95019 0.92753 1.25886 0.92599 0.94046 1.06195 1.70744 1.33945 1.43478 1.06677 0.83436 0.75847 0.76260 0.73986 1.21354 1.21291 1.21281 0.92149 0.92477 0.92638 0.91412 0.91500 0.91722 0.91610 0.91255 0.91186 0.77145 0.77647 0.92664 0.92684 0.96915 0.96901 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.49 37.16 0.32 -0.85 16 2 C -0.10 -0.89 3.41 -88.96 -0.30 -1.19 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -0.91 6.33 -24.74 -0.16 -1.07 16 5 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 6 C -0.14 -1.50 6.59 -25.61 -0.17 -1.66 16 7 C 0.16 1.90 3.12 -66.81 -0.21 1.69 16 8 H 0.09 1.22 7.56 -51.93 -0.39 0.82 16 9 N -0.75 -9.71 4.35 -57.58 -0.25 -9.96 16 10 C 0.70 12.52 8.56 -86.92 -0.74 11.78 16 11 O -0.60 -13.17 16.00 5.29 0.08 -13.08 16 12 N -0.74 -13.47 5.56 -65.23 -0.36 -13.84 16 13 C 0.15 3.29 5.61 -4.04 -0.02 3.27 16 14 C 0.00 -0.02 4.40 -27.88 -0.12 -0.14 16 15 C -0.60 -17.14 9.11 -34.44 -0.31 -17.45 16 16 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 18 N -0.91 -27.60 13.65 55.43 0.76 -26.84 16 19 Si 1.08 25.41 29.90 -169.99 -5.08 20.33 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.43 6.22 -51.92 -0.32 0.11 16 26 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.07 0.87 7.92 -51.93 -0.41 0.46 16 32 H 0.39 4.17 6.46 -40.82 -0.26 3.90 16 33 H 0.39 6.06 8.49 -40.82 -0.35 5.71 16 34 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 37 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 38 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 LS Contribution 307.65 15.07 4.64 4.64 Total: -1.00 -32.81 307.65 -8.50 -41.31 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.29 Total: 3.89 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.99 Total: -6.44 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.14 Total: -50.64 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.81 -8.50 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407960603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.980 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds