Wall clock time and date at job start Sun Mar 29 2020 22:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43148 * 2 1 4 4 C 1.54886 * 110.59642 * 237.38070 * 2 1 3 5 5 C 1.54894 * 102.74786 * 203.31997 * 4 2 1 6 6 C 1.54261 * 104.19298 * 37.94570 * 5 4 2 7 7 C 1.53879 * 106.60254 * 336.38647 * 6 5 4 8 8 H 1.08994 * 110.07464 * 240.69698 * 7 6 5 9 9 N 1.46503 * 110.03084 * 119.28352 * 7 6 5 10 10 C 1.34771 * 119.99567 * 87.83833 * 9 7 6 11 11 O 1.21586 * 120.00768 * 359.97438 * 10 9 7 12 12 N 1.34783 * 119.99706 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99826 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46968 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47207 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99603 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99838 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 H 1.09002 * 109.46620 * 297.45663 * 1 2 3 24 24 H 1.08992 * 109.47440 * 57.45651 * 1 2 3 25 25 H 1.09008 * 109.46976 * 177.46445 * 1 2 3 26 26 H 1.08995 * 110.76133 * 321.63536 * 4 2 1 27 27 H 1.09002 * 110.75447 * 84.82876 * 4 2 1 28 28 H 1.09003 * 110.48714 * 156.62318 * 5 4 2 29 29 H 1.09001 * 110.49052 * 279.13419 * 5 4 2 30 30 H 1.09008 * 110.03481 * 217.10106 * 6 5 4 31 31 H 1.09004 * 110.03539 * 95.67434 * 6 5 4 32 32 H 0.96997 * 119.99893 * 267.83601 * 9 7 6 33 33 H 0.96996 * 120.00038 * 0.02562 * 12 10 9 34 34 H 1.08993 * 109.47363 * 60.00084 * 13 12 10 35 35 H 1.09006 * 109.47292 * 299.99606 * 13 12 10 36 36 H 1.09005 * 109.47493 * 59.99941 * 14 13 12 37 37 H 1.08998 * 109.47006 * 299.99905 * 14 13 12 38 38 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0749 -0.7816 -1.2212 5 6 3.4938 -1.1947 -0.7572 6 6 3.3185 -1.5369 0.7367 7 6 2.0699 -0.7773 1.2183 8 1 2.3382 -0.0834 2.0149 9 7 1.0600 -1.7244 1.6971 10 6 1.0739 -2.1320 2.9816 11 8 1.9248 -1.7143 3.7430 12 7 0.1444 -3.0030 3.4223 13 6 0.1599 -3.4466 4.8184 14 6 -0.9918 -4.4256 5.0552 15 6 -0.9756 -4.8825 6.4912 16 1 -0.2192 -4.5119 7.1672 17 6 -1.9257 -5.7743 6.9417 18 7 -2.8464 -6.2259 6.1183 19 14 -1.9060 -6.3400 8.7218 20 1 -0.7778 -5.6895 9.4355 21 1 -1.7376 -7.8147 8.7708 22 1 -3.1865 -5.9661 9.3743 23 1 -0.3633 0.4739 0.9120 24 1 -0.3634 0.5528 -0.8662 25 1 -0.3633 -1.0267 -0.0455 26 1 1.4628 -1.6608 -1.4216 27 1 2.1248 -0.1389 -2.1002 28 1 3.8369 -2.0685 -1.3111 29 1 4.1920 -0.3669 -0.8817 30 1 4.1936 -1.2116 1.2995 31 1 3.1730 -2.6102 0.8594 32 1 0.3813 -2.0579 1.0897 33 1 -0.5342 -3.3366 2.8149 34 1 0.0449 -2.5842 5.4750 35 1 1.1071 -3.9420 5.0318 36 1 -0.8764 -5.2881 4.3986 37 1 -1.9391 -3.9306 4.8417 38 1 -2.8568 -5.9319 5.1940 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407960603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:32 Heat of formation + Delta-G solvation = -82.037602 kcal Electronic energy + Delta-G solvation = -17201.608926 eV Core-core repulsion = 14462.830251 eV Total energy + Delta-G solvation = -2738.778675 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37284 -39.31906 -36.79434 -35.08206 -34.46215 -32.23570 -31.22402 -28.53844 -26.32830 -25.81432 -23.46367 -22.29806 -21.49044 -20.44871 -19.82166 -18.68108 -17.37034 -16.71398 -16.49286 -16.02372 -15.66717 -15.43714 -15.39833 -14.91671 -14.61717 -14.19032 -13.75978 -13.67361 -13.21506 -12.94984 -12.72414 -12.30048 -12.07033 -12.00811 -11.89780 -11.87569 -11.74100 -11.51268 -11.44314 -11.41194 -10.79465 -10.58819 -10.37366 -9.77724 -8.72780 -6.43445 1.53964 1.62779 1.72197 1.80995 2.11456 2.55524 3.13036 3.30943 3.52196 3.68348 3.90346 4.28171 4.32045 4.34752 4.40959 4.55143 4.56158 4.60638 4.67011 4.75495 4.82198 4.96429 5.05174 5.09263 5.18845 5.22599 5.30180 5.33150 5.34216 5.42780 5.49016 5.63865 5.94070 5.99581 6.13922 6.53424 7.08067 7.36218 7.55894 8.69775 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052418 B = 0.003937 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.042546 B = 7109.700449 C = 7311.422891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.097 0.903 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.137 4.137 7 C 0.155 3.845 8 H 0.063 0.937 9 N -0.723 5.723 10 C 0.696 3.304 11 O -0.640 6.640 12 N -0.736 5.736 13 C 0.168 3.832 14 C 0.008 3.992 15 C -0.623 4.623 16 H 0.049 0.951 17 C -0.031 4.031 18 N -0.933 5.933 19 Si 1.123 2.877 20 H -0.274 1.274 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.408 0.592 33 H 0.406 0.594 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.782 11.421 -17.418 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.115 0.885 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.176 4.176 7 C 0.050 3.950 8 H 0.082 0.918 9 N -0.381 5.381 10 C 0.396 3.604 11 O -0.522 6.522 12 N -0.391 5.391 13 C 0.044 3.956 14 C -0.029 4.029 15 C -0.661 4.661 16 H 0.067 0.933 17 C -0.230 4.230 18 N -0.570 5.570 19 Si 0.944 3.056 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.247 0.753 33 H 0.241 0.759 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.778 10.845 -15.647 20.566 hybrid contribution 0.186 0.518 -1.360 1.467 sum 7.964 11.363 -17.007 21.949 Atomic orbital electron populations 1.21741 0.94149 1.02024 1.02160 1.22261 0.96450 0.99720 0.93027 0.88516 1.22592 0.95463 1.00008 0.97126 1.22329 0.97930 1.01840 0.93426 1.22603 0.97397 0.99856 0.97735 1.21578 0.87268 0.89721 0.96445 0.91850 1.45259 1.35206 1.49223 1.08378 1.16232 0.81570 0.79471 0.83147 1.90852 1.41588 1.62668 1.57136 1.45204 1.33008 1.47924 1.12927 1.20882 0.98499 0.96346 0.79918 1.19300 0.93235 0.93629 0.96783 1.22352 1.16945 1.30233 0.96575 0.93278 1.27366 0.91912 0.93909 1.09772 1.70865 1.35024 1.44500 1.06600 0.82854 0.76753 0.76513 0.69497 1.19868 1.20192 1.20168 0.93666 0.90582 0.92314 0.91152 0.89395 0.90987 0.90425 0.92295 0.92895 0.75348 0.75906 0.93980 0.94054 0.97577 0.97520 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.49 71.98 0.61 -1.39 16 2 C -0.10 -1.41 3.41 -9.72 -0.03 -1.45 16 3 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.35 6.33 31.89 0.20 -1.15 16 5 C -0.12 -1.66 6.83 31.67 0.22 -1.45 16 6 C -0.14 -2.93 6.59 31.32 0.21 -2.72 16 7 C 0.16 3.52 3.12 45.72 0.14 3.66 16 8 H 0.06 1.78 7.56 -2.39 -0.02 1.76 16 9 N -0.72 -18.38 4.35 -454.34 -1.97 -20.35 16 10 C 0.70 25.10 8.56 179.05 1.53 26.63 16 11 O -0.64 -28.86 16.00 -3.99 -0.06 -28.93 16 12 N -0.74 -26.72 5.56 -478.53 -2.66 -29.38 16 13 C 0.17 7.60 5.61 86.38 0.48 8.09 16 14 C 0.01 0.41 4.40 29.85 0.13 0.54 16 15 C -0.62 -35.81 9.11 25.60 0.23 -35.57 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 17 C -0.03 -1.80 5.46 84.65 0.46 -1.34 16 18 N -0.93 -56.53 13.65 21.45 0.29 -56.24 16 19 Si 1.12 50.43 29.90 68.60 2.05 52.48 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.77 6.22 -2.38 -0.01 0.75 16 26 H 0.07 0.82 8.05 -2.39 -0.02 0.81 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.05 1.31 7.92 -2.38 -0.02 1.29 16 32 H 0.41 8.01 6.46 -92.71 -0.60 7.41 16 33 H 0.41 12.30 8.49 -92.71 -0.79 11.52 16 34 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.01 0.31 8.01 -2.38 -0.02 0.29 16 37 H 0.01 0.34 8.01 -2.39 -0.02 0.32 16 38 H 0.26 15.65 7.22 -92.71 -0.67 14.98 16 Total: -1.00 -70.85 307.65 1.59 -69.25 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.24 Total: 19.31 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 4.19 Total: -6.15 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -4.34 Total: -105.97 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.06 Total: -28.93 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.05 Total: 52.48 kcal Total: -70.85 1.59 -69.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407960603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.783 kcal (2) G-P(sol) polarization free energy of solvation -70.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds