Wall clock time and date at job start Sun Mar 29 2020 22:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47193 * 2 1 4 4 O 1.21283 * 119.99638 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00084 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47208 * 179.97438 * 6 5 3 8 8 C 1.53352 * 109.41800 * 295.12674 * 7 6 5 9 9 C 1.53190 * 109.15070 * 178.67720 * 8 7 6 10 10 N 1.46925 * 108.89356 * 54.57285 * 9 8 7 11 11 C 1.36935 * 120.62758 * 126.30089 * 10 9 8 12 12 H 1.08001 * 120.00088 * 332.62829 * 11 10 9 13 13 C 1.38817 * 119.99782 * 152.62208 * 11 10 9 14 14 N 1.31618 * 119.99923 * 159.36242 * 13 11 10 15 15 Si 1.86801 * 120.00195 * 339.36341 * 13 11 10 16 16 H 1.48501 * 109.47054 * 92.89675 * 15 13 11 17 17 H 1.48497 * 109.47324 * 212.90179 * 15 13 11 18 18 H 1.48501 * 109.46722 * 332.89954 * 15 13 11 19 19 C 1.46926 * 118.73822 * 306.31916 * 10 9 8 20 20 C 1.53037 * 109.46053 * 174.99519 * 7 6 5 21 21 H 1.08997 * 109.47363 * 60.00243 * 1 2 3 22 22 H 1.09002 * 109.47549 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47243 * 300.00687 * 1 2 3 24 24 H 1.08996 * 109.47061 * 239.99475 * 2 1 3 25 25 H 1.09008 * 109.46669 * 119.99551 * 2 1 3 26 26 H 0.97004 * 120.00152 * 359.97438 * 5 3 2 27 27 H 1.08996 * 109.47010 * 59.99318 * 6 5 3 28 28 H 1.08996 * 109.46600 * 299.99324 * 6 5 3 29 29 H 1.09008 * 109.45887 * 55.02318 * 7 6 5 30 30 H 1.09004 * 109.68561 * 58.70472 * 8 7 6 31 31 H 1.09004 * 109.47287 * 298.51133 * 8 7 6 32 32 H 1.09004 * 109.58215 * 294.71811 * 9 8 7 33 33 H 1.08997 * 109.58828 * 174.43980 * 9 8 7 34 34 H 0.96999 * 119.99917 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.58248 * 173.39705 * 19 10 9 36 36 H 1.08994 * 109.58922 * 293.68210 * 19 10 9 37 37 H 1.09003 * 109.49698 * 61.43697 * 20 7 6 38 38 H 1.08994 * 109.52761 * 301.35110 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 -0.0011 7 6 5.3757 3.0483 -0.0010 8 6 5.8855 2.4348 1.3088 9 6 7.4170 2.4075 1.2884 10 7 7.9135 3.7645 1.0223 11 6 8.8213 4.3523 1.8622 12 1 8.8571 4.0674 2.9033 13 6 9.6955 5.3145 1.3754 14 7 10.2716 6.1596 2.2038 15 14 10.0543 5.4098 -0.4553 16 1 9.1251 6.3775 -1.0921 17 1 11.4547 5.8584 -0.6626 18 1 9.8683 4.0693 -1.0666 19 6 7.4172 4.4788 -0.1618 20 6 5.8856 4.4857 -0.1274 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9878 0.9298 -0.0005 27 1 3.4826 3.5624 0.8888 28 1 3.4822 3.5618 -0.8912 29 1 5.7390 2.4587 -0.8429 30 1 5.5047 1.4185 1.4108 31 1 5.5436 3.0380 2.1499 32 1 7.7600 1.7326 0.5041 33 1 7.7893 2.0648 2.2538 34 1 10.8822 6.8321 1.8636 35 1 7.7875 5.5039 -0.1519 36 1 7.7622 3.9743 -1.0642 37 1 5.5435 5.0696 0.7271 38 1 5.5031 4.9283 -1.0471 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408231786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:36 Heat of formation + Delta-G solvation = -33.736711 kcal Electronic energy + Delta-G solvation = -17536.908326 eV Core-core repulsion = 14800.224135 eV Total energy + Delta-G solvation = -2736.684192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83182 -38.11167 -35.14154 -33.12496 -32.64860 -31.05758 -30.36149 -27.29635 -24.68596 -23.47071 -22.60153 -21.25038 -20.33474 -19.36535 -17.26230 -16.71954 -15.95114 -15.85841 -15.15737 -14.49144 -14.14501 -14.01600 -13.73548 -13.29874 -13.17850 -12.91197 -12.47461 -12.33436 -12.03138 -11.94901 -11.78138 -11.41286 -11.35056 -10.84694 -10.64796 -10.52034 -10.14919 -9.97657 -9.86600 -9.64473 -9.42933 -9.05148 -8.62810 -6.98541 -5.95576 -3.31299 2.59898 3.17957 3.31288 3.47450 3.50140 4.52227 4.60419 4.85536 4.87363 4.93031 4.98186 5.10016 5.21810 5.33447 5.42837 5.56465 5.68088 5.71390 5.77447 5.87677 5.94267 5.99820 6.04807 6.16131 6.27212 6.37958 6.43739 6.49256 6.61621 6.64259 6.69395 6.95662 7.46404 7.95959 8.18756 8.32325 8.93801 9.71630 10.09593 11.20523 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.056862 B = 0.004746 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.299395 B = 5898.286282 C = 6041.127605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.507 3.493 4 O -0.546 6.546 5 N -0.728 5.728 6 C 0.123 3.877 7 C -0.091 4.091 8 C -0.129 4.129 9 C 0.148 3.852 10 N -0.606 5.606 11 C -0.260 4.260 12 H 0.085 0.915 13 C 0.023 3.977 14 N -0.909 5.909 15 Si 0.884 3.116 16 H -0.288 1.288 17 H -0.303 1.303 18 H -0.271 1.271 19 C 0.126 3.874 20 C -0.126 4.126 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.400 0.600 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.062 0.938 34 H 0.263 0.737 35 H 0.073 0.927 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 -12.411 -5.866 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.293 3.707 4 O -0.424 6.424 5 N -0.379 5.379 6 C -0.001 4.001 7 C -0.110 4.110 8 C -0.168 4.168 9 C 0.022 3.978 10 N -0.330 5.330 11 C -0.389 4.389 12 H 0.102 0.898 13 C -0.176 4.176 14 N -0.552 5.552 15 Si 0.714 3.286 16 H -0.216 1.216 17 H -0.232 1.232 18 H -0.196 1.196 19 C 0.001 3.999 20 C -0.166 4.166 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.235 0.765 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.477 -11.601 -5.816 19.442 hybrid contribution 0.691 -0.163 -1.027 1.248 sum -13.786 -11.764 -6.843 19.372 Atomic orbital electron populations 1.21519 0.93146 1.01406 1.03348 1.21638 0.98616 0.94016 1.04266 1.20786 0.82247 0.91786 0.75883 1.90698 1.55388 1.46674 1.49602 1.46135 1.07005 1.09541 1.75253 1.21526 0.94396 0.82113 1.02042 1.21358 0.92208 0.98495 0.98949 1.22133 0.98728 0.99081 0.96871 1.20908 0.90977 0.86729 0.99169 1.44349 1.48845 1.11906 1.27895 1.18929 1.09704 1.18780 0.91459 0.89753 1.25284 0.97418 0.97626 0.97300 1.69839 1.32657 1.18188 1.34496 0.86935 0.76271 0.77969 0.87395 1.21600 1.23178 1.19642 1.21324 0.91448 0.97416 0.89736 1.21989 0.98541 0.94706 1.01357 0.92063 0.92203 0.91999 0.89054 0.88951 0.76519 0.91484 0.91834 0.91219 0.92957 0.91698 0.96146 0.91930 0.92764 0.90885 0.95792 0.91353 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.16 0.34 -0.80 16 2 C -0.15 -1.15 6.42 -27.88 -0.18 -1.33 16 3 C 0.51 6.13 7.83 -10.99 -0.09 6.04 16 4 O -0.55 -8.94 15.98 5.56 0.09 -8.85 16 5 N -0.73 -8.08 5.27 -60.30 -0.32 -8.40 16 6 C 0.12 1.62 5.07 -4.04 -0.02 1.60 16 7 C -0.09 -1.30 2.19 -90.42 -0.20 -1.50 16 8 C -0.13 -1.94 5.27 -26.45 -0.14 -2.08 16 9 C 0.15 2.78 6.50 -3.71 -0.02 2.76 16 10 N -0.61 -14.15 2.77 -172.32 -0.48 -14.63 16 11 C -0.26 -7.25 10.03 -15.06 -0.15 -7.40 16 12 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 13 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 14 N -0.91 -27.90 13.97 55.49 0.78 -27.13 16 15 Si 0.88 22.32 24.34 -169.99 -4.14 18.18 16 16 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 17 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 18 H -0.27 -6.71 6.64 56.52 0.38 -6.33 16 19 C 0.13 2.70 4.21 -3.71 -0.02 2.68 16 20 C -0.13 -2.16 5.36 -26.61 -0.14 -2.30 16 21 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 24 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.40 3.46 7.65 -40.82 -0.31 3.14 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.05 0.63 7.16 -51.93 -0.37 0.26 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.07 1.73 4.50 -51.93 -0.23 1.50 16 36 H 0.02 0.51 7.07 -51.93 -0.37 0.14 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -32.71 298.31 -6.66 -39.37 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.38 Total: -1.26 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.71 Total: -1.77 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.02 Total: -50.16 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.71 -6.66 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408231786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.632 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds