Wall clock time and date at job start Sun Mar 29 2020 22:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47193 * 2 1 4 4 O 1.21283 * 119.99638 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00084 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47208 * 179.97438 * 6 5 3 8 8 C 1.53352 * 109.41800 * 295.12674 * 7 6 5 9 9 C 1.53190 * 109.15070 * 178.67720 * 8 7 6 10 10 N 1.46925 * 108.89356 * 54.57285 * 9 8 7 11 11 C 1.36935 * 120.62758 * 126.30089 * 10 9 8 12 12 H 1.08001 * 120.00088 * 332.62829 * 11 10 9 13 13 C 1.38817 * 119.99782 * 152.62208 * 11 10 9 14 14 N 1.31618 * 119.99923 * 159.36242 * 13 11 10 15 15 Si 1.86801 * 120.00195 * 339.36341 * 13 11 10 16 16 H 1.48501 * 109.47054 * 92.89675 * 15 13 11 17 17 H 1.48497 * 109.47324 * 212.90179 * 15 13 11 18 18 H 1.48501 * 109.46722 * 332.89954 * 15 13 11 19 19 C 1.46926 * 118.73822 * 306.31916 * 10 9 8 20 20 C 1.53037 * 109.46053 * 174.99519 * 7 6 5 21 21 H 1.08997 * 109.47363 * 60.00243 * 1 2 3 22 22 H 1.09002 * 109.47549 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47243 * 300.00687 * 1 2 3 24 24 H 1.08996 * 109.47061 * 239.99475 * 2 1 3 25 25 H 1.09008 * 109.46669 * 119.99551 * 2 1 3 26 26 H 0.97004 * 120.00152 * 359.97438 * 5 3 2 27 27 H 1.08996 * 109.47010 * 59.99318 * 6 5 3 28 28 H 1.08996 * 109.46600 * 299.99324 * 6 5 3 29 29 H 1.09008 * 109.45887 * 55.02318 * 7 6 5 30 30 H 1.09004 * 109.68561 * 58.70472 * 8 7 6 31 31 H 1.09004 * 109.47287 * 298.51133 * 8 7 6 32 32 H 1.09004 * 109.58215 * 294.71811 * 9 8 7 33 33 H 1.08997 * 109.58828 * 174.43980 * 9 8 7 34 34 H 0.96999 * 119.99917 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.58248 * 173.39705 * 19 10 9 36 36 H 1.08994 * 109.58922 * 293.68210 * 19 10 9 37 37 H 1.09003 * 109.49698 * 61.43697 * 20 7 6 38 38 H 1.08994 * 109.52761 * 301.35110 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 -0.0011 7 6 5.3757 3.0483 -0.0010 8 6 5.8855 2.4348 1.3088 9 6 7.4170 2.4075 1.2884 10 7 7.9135 3.7645 1.0223 11 6 8.8213 4.3523 1.8622 12 1 8.8571 4.0674 2.9033 13 6 9.6955 5.3145 1.3754 14 7 10.2716 6.1596 2.2038 15 14 10.0543 5.4098 -0.4553 16 1 9.1251 6.3775 -1.0921 17 1 11.4547 5.8584 -0.6626 18 1 9.8683 4.0693 -1.0666 19 6 7.4172 4.4788 -0.1618 20 6 5.8856 4.4857 -0.1274 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9878 0.9298 -0.0005 27 1 3.4826 3.5624 0.8888 28 1 3.4822 3.5618 -0.8912 29 1 5.7390 2.4587 -0.8429 30 1 5.5047 1.4185 1.4108 31 1 5.5436 3.0380 2.1499 32 1 7.7600 1.7326 0.5041 33 1 7.7893 2.0648 2.2538 34 1 10.8822 6.8321 1.8636 35 1 7.7875 5.5039 -0.1519 36 1 7.7622 3.9743 -1.0642 37 1 5.5435 5.0696 0.7271 38 1 5.5031 4.9283 -1.0471 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408231786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:36 Heat of formation + Delta-G solvation = -57.234708 kcal Electronic energy + Delta-G solvation = -17537.927276 eV Core-core repulsion = 14800.224135 eV Total energy + Delta-G solvation = -2737.703141 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83187 -39.52770 -36.49527 -34.52102 -33.67198 -32.72702 -31.87224 -28.69886 -26.03224 -24.81529 -23.97708 -22.71123 -21.32560 -20.73662 -18.80106 -18.03382 -17.29581 -16.79792 -16.66760 -15.94297 -15.50703 -15.20736 -15.17195 -14.81127 -14.45711 -14.26285 -13.94042 -13.57622 -13.44196 -13.08736 -12.89744 -12.60780 -12.54334 -12.25188 -12.12153 -11.98963 -11.74153 -11.58938 -11.31164 -11.19702 -10.86387 -10.65013 -10.04484 -8.92041 -8.16729 -5.47953 1.30558 1.41197 1.50752 1.70479 2.29929 2.42073 3.05921 3.37972 3.78423 3.85251 3.88580 3.97298 4.27125 4.31075 4.38334 4.44225 4.54560 4.63418 4.69729 4.75958 4.83332 4.89075 5.01277 5.02419 5.09781 5.11262 5.16838 5.21121 5.27731 5.34976 5.47848 5.61169 5.87571 6.12848 6.62584 6.93616 7.32601 7.64238 8.04116 9.03475 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.056862 B = 0.004746 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.299395 B = 5898.286282 C = 6041.127605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.500 3.500 4 O -0.596 6.596 5 N -0.717 5.717 6 C 0.133 3.867 7 C -0.079 4.079 8 C -0.118 4.118 9 C 0.141 3.859 10 N -0.622 5.622 11 C -0.250 4.250 12 H 0.049 0.951 13 C -0.039 4.039 14 N -0.960 5.960 15 Si 0.951 3.049 16 H -0.275 1.275 17 H -0.313 1.313 18 H -0.257 1.257 19 C 0.120 3.880 20 C -0.122 4.122 21 H 0.044 0.956 22 H 0.086 0.914 23 H 0.042 0.958 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.416 0.584 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.261 0.739 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.049 0.951 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.314 -15.021 -7.982 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.289 3.711 4 O -0.478 6.478 5 N -0.370 5.370 6 C 0.009 3.991 7 C -0.098 4.098 8 C -0.157 4.157 9 C 0.017 3.983 10 N -0.347 5.347 11 C -0.379 4.379 12 H 0.067 0.933 13 C -0.233 4.233 14 N -0.607 5.607 15 Si 0.779 3.221 16 H -0.202 1.202 17 H -0.242 1.242 18 H -0.181 1.181 19 C -0.005 4.005 20 C -0.161 4.161 21 H 0.064 0.936 22 H 0.104 0.896 23 H 0.062 0.938 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.254 0.746 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.757 -14.278 -7.954 22.703 hybrid contribution 1.030 0.599 -0.280 1.224 sum -14.727 -13.680 -8.234 21.721 Atomic orbital electron populations 1.21541 0.93797 1.02562 1.01692 1.21701 0.97954 0.91246 1.06760 1.21599 0.81911 0.93095 0.74484 1.90684 1.56609 1.48572 1.51888 1.46014 1.07264 1.09057 1.74624 1.21225 0.93353 0.83402 1.01145 1.21228 0.92736 0.96677 0.99122 1.22015 0.95825 1.01196 0.96645 1.21140 0.93310 0.84601 0.99299 1.44510 1.48400 1.13939 1.27884 1.18886 1.10084 1.18105 0.90852 0.93342 1.25952 0.97891 0.97737 1.01769 1.69981 1.34375 1.19617 1.36704 0.85850 0.75466 0.78737 0.82016 1.20222 1.24163 1.18102 1.21389 0.94152 0.95723 0.89190 1.21892 0.95455 0.96854 1.01926 0.93639 0.89557 0.93847 0.86216 0.86454 0.74623 0.93336 0.92040 0.89088 0.88923 0.93785 0.93992 0.93016 0.93013 0.93692 0.94389 0.93166 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.20 71.98 0.66 -1.32 16 2 C -0.14 -1.65 6.42 29.85 0.19 -1.46 16 3 C 0.50 10.78 7.83 87.66 0.69 11.47 16 4 O -0.60 -18.97 15.98 -3.04 -0.05 -19.01 16 5 N -0.72 -13.34 5.27 -463.07 -2.44 -15.78 16 6 C 0.13 3.17 5.07 86.38 0.44 3.61 16 7 C -0.08 -1.99 2.19 -10.66 -0.02 -2.01 16 8 C -0.12 -3.21 5.27 30.78 0.16 -3.05 16 9 C 0.14 5.00 6.50 86.36 0.56 5.56 16 10 N -0.62 -28.56 2.77 -699.10 -1.94 -30.50 16 11 C -0.25 -14.21 10.03 84.03 0.84 -13.36 16 12 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 13 C -0.04 -2.30 5.23 84.86 0.44 -1.86 16 14 N -0.96 -61.10 13.97 21.65 0.30 -60.80 16 15 Si 0.95 46.49 24.34 68.60 1.67 48.16 16 16 H -0.28 -12.76 6.62 99.48 0.66 -12.10 16 17 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 18 H -0.26 -11.79 6.64 99.48 0.66 -11.13 16 19 C 0.12 4.91 4.21 86.36 0.36 5.28 16 20 C -0.12 -3.89 5.36 30.67 0.16 -3.73 16 21 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 22 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.04 0.77 8.10 -2.38 -0.02 0.75 16 24 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.42 5.07 7.65 -92.71 -0.71 4.36 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.09 1.80 7.16 -2.38 -0.02 1.79 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.91 7.93 -2.39 -0.02 1.90 16 34 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.04 2.08 4.50 -2.39 -0.01 2.07 16 36 H 0.04 1.46 7.07 -2.39 -0.02 1.45 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -74.21 298.31 2.26 -71.95 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: 0.23 Total: 6.87 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 4.49 Total: -0.88 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.08 Total: -107.08 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.05 Total: -19.01 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.67 Total: 48.16 kcal Total: -74.21 2.26 -71.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408231786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.713 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds