Wall clock time and date at job start Sun Mar 29 2020 22:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 110.36662 * 2 1 4 4 C 1.54381 * 110.50989 * 237.58642 * 2 1 3 5 5 C 1.54257 * 105.05919 * 217.31554 * 4 2 1 6 6 C 1.54383 * 105.06025 * 359.97438 * 5 4 2 7 7 H 1.08995 * 110.41189 * 265.07191 * 6 5 4 8 8 C 1.53006 * 110.41253 * 142.63019 * 6 5 4 9 9 N 1.48554 * 104.59433 * 23.85254 * 6 5 4 10 10 C 1.46899 * 111.00092 * 200.96012 * 9 6 5 11 11 C 1.50699 * 109.47110 * 59.92940 * 10 9 6 12 12 O 1.21278 * 120.00003 * 354.63401 * 11 10 9 13 13 N 1.34778 * 120.00086 * 174.62789 * 11 10 9 14 14 C 1.46503 * 120.00166 * 180.02562 * 13 11 10 15 15 C 1.50692 * 109.47026 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00285 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99850 * 180.27648 * 15 14 13 18 18 N 1.31511 * 119.99776 * 179.72502 * 17 15 14 19 19 Si 1.86801 * 119.99845 * 359.72269 * 17 15 14 20 20 H 1.48501 * 109.46959 * 90.00247 * 19 17 15 21 21 H 1.48495 * 109.46793 * 210.00222 * 19 17 15 22 22 H 1.48501 * 109.46932 * 330.00055 * 19 17 15 23 23 H 1.09006 * 109.47057 * 297.64977 * 1 2 3 24 24 H 1.09001 * 109.47392 * 57.64956 * 1 2 3 25 25 H 1.08999 * 109.46900 * 177.64582 * 1 2 3 26 26 H 1.08995 * 110.32635 * 336.21013 * 4 2 1 27 27 H 1.09000 * 110.32624 * 98.41973 * 4 2 1 28 28 H 1.09002 * 110.32737 * 118.89152 * 5 4 2 29 29 H 1.08995 * 110.32655 * 241.00510 * 5 4 2 30 30 H 1.08997 * 109.46869 * 309.80471 * 8 6 5 31 31 H 1.08999 * 109.46665 * 69.80366 * 8 6 5 32 32 H 1.08992 * 109.47146 * 189.80845 * 8 6 5 33 33 H 1.09001 * 109.46951 * 299.92990 * 10 9 6 34 34 H 1.09001 * 109.47191 * 179.97438 * 10 9 6 35 35 H 0.97006 * 119.99955 * 0.02562 * 13 11 10 36 36 H 1.09002 * 109.46762 * 60.00176 * 14 13 11 37 37 H 1.08994 * 109.46932 * 300.00181 * 14 13 11 38 38 H 0.97005 * 119.99835 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0709 -0.7751 -1.2207 5 6 3.3209 -1.5161 -0.7031 6 6 3.4305 -1.1259 0.7866 7 1 4.1073 -0.2804 0.9093 8 6 3.9087 -2.3188 1.6169 9 7 2.0487 -0.7442 1.1761 10 6 2.0552 0.1043 2.3753 11 6 2.8447 1.3580 2.0993 12 8 3.4329 1.4847 1.0463 13 7 2.8970 2.3384 3.0226 14 6 3.6640 3.5573 2.7542 15 6 3.5617 4.4859 3.9366 16 1 2.9828 4.1972 4.8015 17 6 4.2020 5.7068 3.9119 18 7 4.1082 6.5194 4.9416 19 14 5.2026 6.2064 2.4157 20 1 4.3290 6.9246 1.4533 21 1 6.3123 7.0983 2.8379 22 1 5.7620 4.9935 1.7667 23 1 -0.3633 0.4769 0.9104 24 1 -0.3634 0.5499 -0.8682 25 1 -0.3633 -1.0268 -0.0422 26 1 1.3276 -1.4888 -1.5757 27 1 2.3437 -0.0835 -2.0178 28 1 3.1912 -2.5937 -0.8040 29 1 4.2070 -1.1895 -1.2473 30 1 3.2997 -3.1919 1.3827 31 1 4.9520 -2.5298 1.3821 32 1 3.8150 -2.0843 2.6772 33 1 2.5129 -0.4387 3.2021 34 1 1.0312 0.3696 2.6382 35 1 2.4267 2.2369 3.8650 36 1 3.2637 4.0508 1.8685 37 1 4.7093 3.2989 2.5849 38 1 4.5583 7.3785 4.9241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408256632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:36 Heat of formation + Delta-G solvation = -35.530218 kcal Electronic energy + Delta-G solvation = -17969.561822 eV Core-core repulsion = 15232.799858 eV Total energy + Delta-G solvation = -2736.761964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.30930 -37.76471 -34.35948 -32.53124 -32.48955 -32.10126 -28.57779 -28.07306 -25.64116 -23.71562 -22.14397 -20.41840 -20.18058 -19.71876 -17.20516 -16.31212 -15.88435 -15.08887 -15.01394 -14.97573 -14.51747 -13.97169 -13.33810 -13.21846 -13.01081 -12.60981 -12.43223 -12.34948 -11.94976 -11.83534 -11.47797 -11.31323 -11.00022 -10.85290 -10.83486 -10.67345 -10.49633 -10.09527 -10.05964 -9.93008 -9.53292 -8.81159 -8.18114 -7.96194 -6.25398 -4.27917 3.08307 3.22961 3.29755 3.37405 3.98219 4.06410 4.29381 4.72389 4.86614 5.09739 5.11764 5.30402 5.39973 5.42083 5.57455 5.57946 5.59850 5.71595 5.73075 5.82581 5.88394 6.05309 6.05646 6.13448 6.21442 6.28486 6.45959 6.49458 6.73547 7.01083 7.04833 7.12777 7.16999 7.34852 8.07000 8.45332 8.69588 8.84288 9.34508 10.86561 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.033762 B = 0.005665 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.134294 B = 4941.822232 C = 4950.008079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.039 3.961 3 H 0.088 0.912 4 C -0.113 4.113 5 C -0.113 4.113 6 C 0.038 3.962 7 H 0.092 0.908 8 C -0.135 4.135 9 N -0.483 5.483 10 C 0.020 3.980 11 C 0.469 3.531 12 O -0.554 6.554 13 N -0.702 5.702 14 C 0.219 3.781 15 C -0.545 4.545 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.262 1.262 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.397 0.603 36 H 0.019 0.981 37 H 0.024 0.976 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 -15.348 -7.985 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.069 4.069 3 H 0.106 0.894 4 C -0.151 4.151 5 C -0.151 4.151 6 C -0.070 4.070 7 H 0.109 0.891 8 C -0.193 4.193 9 N -0.206 5.206 10 C -0.113 4.113 11 C 0.254 3.746 12 O -0.435 6.435 13 N -0.350 5.350 14 C 0.097 3.903 15 C -0.583 4.583 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.529 5.529 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.186 1.186 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.231 0.769 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.251 -15.521 -8.507 18.202 hybrid contribution 0.775 1.200 -0.287 1.457 sum -3.476 -14.320 -8.794 17.161 Atomic orbital electron populations 1.21730 0.94666 1.01661 1.01237 1.22982 0.94955 0.99170 0.89811 0.89398 1.22232 0.97143 0.98606 0.97117 1.22241 0.97878 0.99788 0.95197 1.23003 0.91145 0.98547 0.94272 0.89059 1.21738 1.00151 0.97700 0.99673 1.65643 1.18321 1.34160 1.02502 1.22388 1.01255 0.91407 0.96211 1.21804 0.82265 0.85946 0.84596 1.90549 1.46942 1.80540 1.25480 1.46375 1.51030 1.18612 1.18958 1.19481 0.91384 0.82112 0.97323 1.21096 1.33851 1.01316 1.02016 0.90236 1.24802 0.95678 0.95871 0.96238 1.69879 1.43151 1.09835 1.29995 0.86814 0.80412 0.79315 0.83114 1.19868 1.20836 1.18621 0.92966 0.92640 0.92398 0.91740 0.91821 0.91769 0.91830 0.92508 0.92693 0.92929 0.88025 0.88135 0.76927 0.96269 0.95796 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.38 37.16 0.35 -1.28 16 2 C 0.04 0.55 2.50 -66.09 -0.17 0.39 16 3 H 0.09 1.55 5.14 -51.92 -0.27 1.28 16 4 C -0.11 -1.43 6.55 -25.35 -0.17 -1.60 16 5 C -0.11 -1.43 6.55 -25.35 -0.17 -1.59 16 6 C 0.04 0.54 2.52 -66.07 -0.17 0.37 16 7 H 0.09 1.59 5.20 -51.93 -0.27 1.32 16 8 C -0.13 -1.59 9.46 37.16 0.35 -1.24 16 9 N -0.48 -6.77 5.01 -215.80 -1.08 -7.85 16 10 C 0.02 0.27 5.83 -4.98 -0.03 0.25 16 11 C 0.47 8.54 6.86 -10.99 -0.08 8.47 16 12 O -0.55 -11.68 11.39 5.56 0.06 -11.62 16 13 N -0.70 -13.86 5.55 -61.48 -0.34 -14.20 16 14 C 0.22 5.34 4.50 -5.20 -0.02 5.31 16 15 C -0.54 -14.86 9.83 -34.44 -0.34 -15.20 16 16 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 17 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 18 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 19 Si 0.88 21.41 27.46 -169.99 -4.67 16.74 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.26 -6.36 6.55 56.52 0.37 -5.99 16 23 H 0.05 0.63 7.49 -51.93 -0.39 0.24 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.06 0.72 7.83 -51.93 -0.41 0.32 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.72 7.74 -51.93 -0.40 0.32 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.61 7.29 -51.93 -0.38 0.23 16 33 H 0.10 1.25 7.29 -51.93 -0.38 0.87 16 34 H 0.10 1.23 7.50 -51.93 -0.39 0.84 16 35 H 0.40 6.92 8.32 -40.82 -0.34 6.58 16 36 H 0.02 0.49 7.56 -51.93 -0.39 0.10 16 37 H 0.02 0.62 7.21 -51.93 -0.37 0.24 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 296.94 15.07 4.47 4.47 Total: -1.00 -30.42 296.94 -7.40 -37.82 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.09 Total: 4.28 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.53 Total: -4.03 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.65 Total: -47.67 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.06 Total: -11.62 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.42 -7.40 -37.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408256632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.292 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds