Wall clock time and date at job start Sun Mar 29 2020 22:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.41791 * 2 1 4 4 C 1.54903 * 110.37575 * 237.68518 * 2 1 3 5 5 C 1.55143 * 101.65359 * 204.10067 * 4 2 1 6 6 C 1.54315 * 103.01726 * 35.65371 * 5 4 2 7 7 H 1.09005 * 109.88761 * 97.12378 * 6 5 4 8 8 C 1.53004 * 109.88648 * 218.30771 * 6 5 4 9 9 N 1.47437 * 107.23809 * 337.71524 * 6 5 4 10 10 C 1.46904 * 111.00423 * 236.74451 * 9 6 5 11 11 C 1.50702 * 109.47130 * 70.95952 * 10 9 6 12 12 O 1.21284 * 119.99694 * 354.25557 * 11 10 9 13 13 N 1.34769 * 119.99912 * 174.25545 * 11 10 9 14 14 C 1.46506 * 119.99886 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.46881 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00122 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99812 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00278 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46971 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46920 * 120.00128 * 19 17 15 22 22 H 1.48500 * 109.46920 * 239.99825 * 19 17 15 23 23 H 1.09004 * 109.47445 * 292.90373 * 1 2 3 24 24 H 1.09005 * 109.47334 * 52.90243 * 1 2 3 25 25 H 1.08998 * 109.47096 * 172.89973 * 1 2 3 26 26 H 1.09008 * 110.98783 * 86.01286 * 4 2 1 27 27 H 1.08997 * 110.99079 * 322.19367 * 4 2 1 28 28 H 1.09004 * 110.70647 * 277.26970 * 5 4 2 29 29 H 1.08995 * 110.70372 * 154.03732 * 5 4 2 30 30 H 1.09006 * 109.46592 * 170.75071 * 8 6 5 31 31 H 1.08998 * 109.47326 * 290.75179 * 8 6 5 32 32 H 1.09000 * 109.46811 * 50.75428 * 8 6 5 33 33 H 1.09000 * 109.47367 * 190.96086 * 10 9 6 34 34 H 1.09001 * 109.46709 * 310.96386 * 10 9 6 35 35 H 0.97000 * 120.00266 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47039 * 299.99813 * 14 13 11 37 37 H 1.08997 * 109.47326 * 59.99884 * 14 13 11 38 38 H 0.96999 * 120.00039 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0693 -0.7763 -1.2272 5 6 3.4786 -1.1995 -0.7357 6 6 3.2535 -1.4807 0.7648 7 1 3.1055 -2.5488 0.9238 8 6 4.4583 -0.9931 1.5722 9 7 2.0447 -0.7408 1.1714 10 6 2.3356 0.1718 2.2852 11 6 3.1783 1.3181 1.7884 12 8 3.5916 1.3173 0.6481 13 7 3.4726 2.3442 2.6111 14 6 4.2913 3.4589 2.1279 15 6 4.4713 4.4664 3.2341 16 1 4.0213 4.2934 4.2005 17 6 5.2114 5.6084 3.0128 18 7 5.7599 5.8188 1.8360 19 14 5.4352 6.8569 4.3842 20 1 4.7240 6.3886 5.6007 21 1 6.8816 7.0084 4.6844 22 1 4.8784 8.1658 3.9576 23 1 -0.3634 0.4000 0.9467 24 1 -0.3634 0.6199 -0.8197 25 1 -0.3633 -1.0198 -0.1270 26 1 2.1389 -0.1270 -2.1001 27 1 1.4515 -1.6488 -1.4397 28 1 4.1942 -0.3887 -0.8728 29 1 3.8119 -2.1003 -1.2508 30 1 4.2267 -1.0428 2.6362 31 1 5.3194 -1.6260 1.3578 32 1 4.6868 0.0367 1.2978 33 1 1.4011 0.5576 2.6925 34 1 2.8766 -0.3661 3.0638 35 1 3.1423 2.3447 3.5231 36 1 5.2659 3.0848 1.8145 37 1 3.7953 3.9340 1.2815 38 1 6.2803 6.6224 1.6802 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408256633.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:37 Heat of formation + Delta-G solvation = -17.348847 kcal Electronic energy + Delta-G solvation = -18236.071667 eV Core-core repulsion = 15500.098107 eV Total energy + Delta-G solvation = -2735.973561 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62514 -37.52860 -34.21696 -32.71227 -32.38503 -31.75456 -27.99485 -27.70291 -25.68857 -23.52977 -22.51126 -20.64637 -20.05811 -19.02796 -17.19748 -16.23745 -15.96669 -15.45901 -15.07317 -14.53139 -14.17256 -13.87336 -13.23863 -12.95892 -12.72800 -12.56128 -12.35091 -12.01108 -11.79310 -11.37409 -11.35611 -11.13563 -10.98561 -10.97679 -10.61271 -10.47744 -10.35410 -10.25801 -9.99522 -9.43335 -9.41415 -8.75696 -8.03480 -7.73056 -6.20856 -4.27919 3.20686 3.23385 3.28142 3.31081 4.08945 4.13999 4.35419 4.91528 4.94825 5.15529 5.22600 5.46165 5.46677 5.57135 5.61224 5.66651 5.76262 5.77997 5.90037 5.94896 6.04642 6.11259 6.19580 6.33113 6.36133 6.51281 6.65891 6.76993 7.19288 7.23854 7.30108 7.39708 7.45785 7.62408 7.92376 8.55966 8.72449 9.02110 9.39024 10.89251 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039746 B = 0.005489 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.298453 B = 5100.299704 C = 5179.926692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.046 3.954 3 H 0.097 0.903 4 C -0.115 4.115 5 C -0.129 4.129 6 C 0.080 3.920 7 H 0.074 0.926 8 C -0.204 4.204 9 N -0.502 5.502 10 C 0.018 3.982 11 C 0.472 3.528 12 O -0.545 6.545 13 N -0.709 5.709 14 C 0.249 3.751 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.391 0.609 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -12.469 -0.720 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.062 4.062 3 H 0.114 0.886 4 C -0.153 4.153 5 C -0.167 4.167 6 C -0.028 4.028 7 H 0.092 0.908 8 C -0.261 4.261 9 N -0.225 5.225 10 C -0.114 4.114 11 C 0.257 3.743 12 O -0.428 6.428 13 N -0.356 5.356 14 C 0.128 3.872 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.223 0.777 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.173 -12.670 -1.445 14.631 hybrid contribution 0.702 1.315 0.949 1.767 sum -6.471 -11.355 -0.496 13.079 Atomic orbital electron populations 1.21731 0.95130 1.01266 1.01053 1.23030 0.94400 0.99923 0.88820 0.88589 1.22572 0.96123 0.99235 0.97389 1.22790 0.97899 1.01166 0.94885 1.22189 0.88637 0.97426 0.94572 0.90795 1.23088 0.97713 1.05662 0.99626 1.63997 1.27513 1.23804 1.07166 1.22553 0.99891 0.92462 0.96499 1.21514 0.81486 0.84552 0.86749 1.90565 1.53955 1.79486 1.18757 1.46641 1.52191 1.21990 1.14824 1.19101 0.90041 0.82569 0.95501 1.21269 1.33900 1.04965 0.98048 0.91856 1.24959 0.95082 0.98015 0.95964 1.69984 1.33342 1.27193 1.21797 0.86361 0.78009 0.80929 0.81634 1.19607 1.20783 1.20770 0.93009 0.92850 0.92832 0.91447 0.91873 0.89906 0.92309 0.92672 0.93120 0.88196 0.88784 0.87660 0.77655 0.95602 0.95612 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.62 37.16 0.36 -1.36 16 2 C 0.05 0.69 2.42 -66.19 -0.16 0.53 16 3 H 0.10 1.78 4.84 -51.93 -0.25 1.53 16 4 C -0.12 -1.60 6.49 -24.59 -0.16 -1.76 16 5 C -0.13 -1.88 5.94 -24.91 -0.15 -2.03 16 6 C 0.08 1.15 3.72 -66.73 -0.25 0.91 16 7 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 8 C -0.20 -3.10 7.69 37.16 0.29 -2.81 16 9 N -0.50 -7.40 5.07 -216.95 -1.10 -8.50 16 10 C 0.02 0.26 5.57 -4.97 -0.03 0.23 16 11 C 0.47 8.79 5.23 -10.99 -0.06 8.73 16 12 O -0.55 -11.67 9.53 5.55 0.05 -11.62 16 13 N -0.71 -14.29 5.55 -61.47 -0.34 -14.63 16 14 C 0.25 6.41 5.43 -5.19 -0.03 6.39 16 15 C -0.54 -14.53 9.28 -34.44 -0.32 -14.85 16 16 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 19 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.64 8.03 -51.93 -0.42 0.22 16 26 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.06 0.79 7.98 -51.93 -0.41 0.37 16 28 H 0.08 1.42 6.72 -51.93 -0.35 1.07 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.77 5.86 -51.93 -0.30 0.47 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 1.87 4.06 -51.95 -0.21 1.66 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.11 1.37 5.82 -51.93 -0.30 1.06 16 35 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -29.53 291.96 -7.80 -37.33 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.93 Total: 6.87 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -0.60 Total: -4.38 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.70 Total: -48.27 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.05 Total: -11.62 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.53 -7.80 -37.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408256633.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.985 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds