Wall clock time and date at job start Sun Mar 29 2020 22:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.41791 * 2 1 4 4 C 1.54903 * 110.37575 * 237.68518 * 2 1 3 5 5 C 1.55143 * 101.65359 * 204.10067 * 4 2 1 6 6 C 1.54315 * 103.01726 * 35.65371 * 5 4 2 7 7 H 1.09005 * 109.88761 * 97.12378 * 6 5 4 8 8 C 1.53004 * 109.88648 * 218.30771 * 6 5 4 9 9 N 1.47437 * 107.23809 * 337.71524 * 6 5 4 10 10 C 1.46904 * 111.00423 * 236.74451 * 9 6 5 11 11 C 1.50702 * 109.47130 * 70.95952 * 10 9 6 12 12 O 1.21284 * 119.99694 * 354.25557 * 11 10 9 13 13 N 1.34769 * 119.99912 * 174.25545 * 11 10 9 14 14 C 1.46506 * 119.99886 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.46881 * 179.97438 * 14 13 11 16 16 H 1.08004 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00122 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99812 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00278 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46971 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.46920 * 120.00128 * 19 17 15 22 22 H 1.48500 * 109.46920 * 239.99825 * 19 17 15 23 23 H 1.09004 * 109.47445 * 292.90373 * 1 2 3 24 24 H 1.09005 * 109.47334 * 52.90243 * 1 2 3 25 25 H 1.08998 * 109.47096 * 172.89973 * 1 2 3 26 26 H 1.09008 * 110.98783 * 86.01286 * 4 2 1 27 27 H 1.08997 * 110.99079 * 322.19367 * 4 2 1 28 28 H 1.09004 * 110.70647 * 277.26970 * 5 4 2 29 29 H 1.08995 * 110.70372 * 154.03732 * 5 4 2 30 30 H 1.09006 * 109.46592 * 170.75071 * 8 6 5 31 31 H 1.08998 * 109.47326 * 290.75179 * 8 6 5 32 32 H 1.09000 * 109.46811 * 50.75428 * 8 6 5 33 33 H 1.09000 * 109.47367 * 190.96086 * 10 9 6 34 34 H 1.09001 * 109.46709 * 310.96386 * 10 9 6 35 35 H 0.97000 * 120.00266 * 0.02562 * 13 11 10 36 36 H 1.09000 * 109.47039 * 299.99813 * 14 13 11 37 37 H 1.08997 * 109.47326 * 59.99884 * 14 13 11 38 38 H 0.96999 * 120.00039 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0693 -0.7763 -1.2272 5 6 3.4786 -1.1995 -0.7357 6 6 3.2535 -1.4807 0.7648 7 1 3.1055 -2.5488 0.9238 8 6 4.4583 -0.9931 1.5722 9 7 2.0447 -0.7408 1.1714 10 6 2.3356 0.1718 2.2852 11 6 3.1783 1.3181 1.7884 12 8 3.5916 1.3173 0.6481 13 7 3.4726 2.3442 2.6111 14 6 4.2913 3.4589 2.1279 15 6 4.4713 4.4664 3.2341 16 1 4.0213 4.2934 4.2005 17 6 5.2114 5.6084 3.0128 18 7 5.7599 5.8188 1.8360 19 14 5.4352 6.8569 4.3842 20 1 4.7240 6.3886 5.6007 21 1 6.8816 7.0084 4.6844 22 1 4.8784 8.1658 3.9576 23 1 -0.3634 0.4000 0.9467 24 1 -0.3634 0.6199 -0.8197 25 1 -0.3633 -1.0198 -0.1270 26 1 2.1389 -0.1270 -2.1001 27 1 1.4515 -1.6488 -1.4397 28 1 4.1942 -0.3887 -0.8728 29 1 3.8119 -2.1003 -1.2508 30 1 4.2267 -1.0428 2.6362 31 1 5.3194 -1.6260 1.3578 32 1 4.6868 0.0367 1.2978 33 1 1.4011 0.5576 2.6925 34 1 2.8766 -0.3661 3.0638 35 1 3.1423 2.3447 3.5231 36 1 5.2659 3.0848 1.8145 37 1 3.7953 3.9340 1.2815 38 1 6.2803 6.6224 1.6802 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408256633.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:37 Heat of formation + Delta-G solvation = -39.018990 kcal Electronic energy + Delta-G solvation = -18237.011355 eV Core-core repulsion = 15500.098107 eV Total energy + Delta-G solvation = -2736.913249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.98199 -38.96009 -36.07497 -34.39547 -33.80381 -33.00845 -29.68698 -28.99444 -27.18769 -24.76090 -24.36754 -21.82337 -21.64517 -20.35935 -18.89998 -17.80299 -17.37578 -16.99677 -16.77254 -16.09263 -15.43805 -15.39953 -14.65027 -14.44737 -14.04013 -13.95903 -13.89571 -13.70535 -13.16418 -12.91104 -12.77606 -12.51650 -12.48081 -12.28238 -12.23693 -11.81757 -11.62535 -11.47745 -11.45376 -11.26857 -10.89803 -10.78539 -9.76925 -9.13594 -8.31202 -6.47708 1.41760 1.42423 1.56062 1.74394 2.31653 2.63207 2.96872 3.03817 3.75568 3.80516 3.98457 4.15186 4.32919 4.35795 4.48537 4.52104 4.62493 4.66269 4.77326 4.86861 4.90489 5.03467 5.04787 5.10119 5.19479 5.23358 5.25061 5.31485 5.46497 5.50774 5.55978 5.74238 5.84493 6.04858 6.05772 6.64339 6.92271 7.22232 7.50313 8.80801 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039746 B = 0.005489 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.298453 B = 5100.299704 C = 5179.926692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.041 3.959 3 H 0.056 0.944 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.077 3.923 7 H 0.099 0.901 8 C -0.199 4.199 9 N -0.493 5.493 10 C 0.028 3.972 11 C 0.470 3.530 12 O -0.574 6.574 13 N -0.708 5.708 14 C 0.270 3.730 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.983 3.017 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.407 0.593 36 H -0.015 1.015 37 H -0.016 1.016 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 -13.855 1.171 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.067 4.067 3 H 0.074 0.926 4 C -0.150 4.150 5 C -0.168 4.168 6 C -0.031 4.031 7 H 0.117 0.883 8 C -0.257 4.257 9 N -0.216 5.216 10 C -0.104 4.104 11 C 0.258 3.742 12 O -0.457 6.457 13 N -0.358 5.358 14 C 0.147 3.853 15 C -0.593 4.593 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.807 3.193 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.147 0.853 35 H 0.242 0.758 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.637 -14.095 0.461 16.537 hybrid contribution 1.163 1.683 0.262 2.063 sum -7.473 -12.412 0.723 14.506 Atomic orbital electron populations 1.21672 0.93008 1.02353 1.01442 1.22988 0.96048 0.97922 0.89697 0.92603 1.22591 0.95979 0.99801 0.96666 1.22757 0.97514 1.00817 0.95758 1.22321 0.88161 0.98544 0.94046 0.88331 1.22979 0.98716 1.03343 1.00634 1.64136 1.27311 1.23150 1.06979 1.22666 1.00169 0.90647 0.96891 1.22404 0.80952 0.84830 0.86057 1.90584 1.54753 1.80003 1.20330 1.46374 1.52254 1.21253 1.15919 1.18458 0.88439 0.83973 0.94434 1.21673 1.33782 1.05099 0.98726 0.89925 1.26060 0.94514 1.00429 0.98606 1.70144 1.34353 1.28117 1.24448 0.85128 0.78031 0.77646 0.78532 1.17614 1.20492 1.20486 0.92773 0.92427 0.91282 0.92160 0.89467 0.93605 0.90050 0.91183 0.92164 0.92140 0.86394 0.85284 0.75812 0.99681 0.99804 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.62 71.98 0.69 -2.29 16 2 C 0.04 1.21 2.42 45.38 0.11 1.32 16 3 H 0.06 2.13 4.84 -2.38 -0.01 2.12 16 4 C -0.11 -3.01 6.49 31.98 0.21 -2.81 16 5 C -0.13 -3.71 5.94 31.77 0.19 -3.52 16 6 C 0.08 2.08 3.72 45.26 0.17 2.25 16 7 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 8 C -0.20 -5.87 7.69 71.98 0.55 -5.32 16 9 N -0.49 -13.48 5.07 -840.29 -4.26 -17.73 16 10 C 0.03 0.76 5.57 85.56 0.48 1.23 16 11 C 0.47 17.78 5.23 87.66 0.46 18.24 16 12 O -0.57 -25.87 9.53 -3.04 -0.03 -25.90 16 13 N -0.71 -29.09 5.55 -466.79 -2.59 -31.67 16 14 C 0.27 14.65 5.43 85.63 0.46 15.11 16 15 C -0.55 -30.04 9.28 25.60 0.24 -29.81 16 16 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 17 C 0.00 0.19 5.46 84.65 0.46 0.65 16 18 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 19 Si 0.98 42.28 29.54 68.60 2.03 44.31 16 20 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.07 1.42 8.03 -2.39 -0.02 1.40 16 26 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.09 1.93 7.98 -2.39 -0.02 1.91 16 28 H 0.05 1.64 6.72 -2.38 -0.02 1.63 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.80 5.86 -2.38 -0.01 1.79 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 2.32 4.06 -2.66 -0.01 2.31 16 33 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.13 2.93 5.82 -2.39 -0.01 2.92 16 35 H 0.41 13.88 8.32 -92.71 -0.77 13.11 16 36 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 38 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -67.05 291.96 -0.27 -67.32 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.28 Total: 24.61 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 4.02 Total: -4.94 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -6.56 Total: -105.39 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.03 Total: -25.90 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -67.05 -0.27 -67.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408256633.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.297 kcal (2) G-P(sol) polarization free energy of solvation -67.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds