Wall clock time and date at job start Sun Mar 29 2020 22:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.88716 * 2 1 4 4 C 1.55154 * 111.00658 * 123.91994 * 2 1 3 5 5 C 1.54333 * 103.02290 * 153.38255 * 4 2 1 6 6 N 1.47022 * 107.26625 * 338.14495 * 5 4 2 7 7 C 1.34772 * 125.64940 * 178.85486 * 6 5 4 8 8 O 1.21276 * 120.00250 * 179.69118 * 7 6 5 9 9 C 1.50707 * 119.99926 * 359.68171 * 7 6 5 10 10 H 1.08998 * 109.46710 * 40.00386 * 9 7 6 11 11 N 1.46898 * 109.47045 * 160.00562 * 9 7 6 12 12 C 1.52996 * 109.47058 * 280.00535 * 9 7 6 13 13 C 1.52998 * 109.46929 * 175.00132 * 12 9 7 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.47421 * 108.70161 * 358.58222 * 6 5 4 23 23 H 1.09006 * 109.46660 * 183.88174 * 1 2 3 24 24 H 1.08995 * 109.47252 * 303.88034 * 1 2 3 25 25 H 1.09000 * 109.47207 * 63.88680 * 1 2 3 26 26 H 1.09001 * 110.72070 * 271.94505 * 4 2 1 27 27 H 1.09000 * 110.72037 * 35.21103 * 4 2 1 28 28 H 1.09000 * 109.99329 * 218.66648 * 5 4 2 29 29 H 1.09004 * 109.77579 * 97.49727 * 5 4 2 30 30 H 1.00898 * 110.99837 * 59.99839 * 11 9 7 31 31 H 1.00894 * 110.99865 * 183.95452 * 11 9 7 32 32 H 1.09000 * 109.47441 * 55.00222 * 12 9 7 33 33 H 1.09002 * 109.47087 * 294.99668 * 12 9 7 34 34 H 1.09001 * 109.47671 * 60.00109 * 13 12 9 35 35 H 1.09006 * 109.47297 * 299.99829 * 13 12 9 36 36 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 37 37 H 1.09000 * 110.36584 * 143.19912 * 22 6 5 38 38 H 1.09004 * 110.36890 * 265.52289 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8083 1.2019 5 6 3.4658 -1.2796 0.6955 6 7 3.4272 -1.2427 -0.7737 7 6 4.4477 -1.5610 -1.5945 8 8 4.3009 -1.4993 -2.7967 9 6 5.7714 -1.9934 -1.0183 10 1 5.5992 -2.6423 -0.1596 11 7 6.5345 -2.7241 -2.0390 12 6 6.5621 -0.7607 -0.5756 13 6 7.8497 -1.2040 0.1218 14 6 8.6289 0.0102 0.5573 15 1 8.2443 0.9993 0.3563 16 6 9.8325 -0.1415 1.2123 17 7 10.3010 -1.3458 1.4566 18 14 10.7986 1.3636 1.7515 19 1 12.0477 0.9333 2.4296 20 1 11.1383 2.1859 0.5625 21 1 9.9776 2.1682 2.6916 22 6 2.0854 -0.8062 -1.2006 23 1 -0.3633 -1.0254 0.0696 24 1 -0.3633 0.5729 0.8531 25 1 -0.3633 0.4523 -0.9228 26 1 2.1921 -0.1706 2.0796 27 1 1.4468 -1.6636 1.4204 28 1 3.6602 -2.2967 1.0359 29 1 4.2424 -0.6087 1.0629 30 1 6.7071 -2.1435 -2.8459 31 1 7.3983 -3.0804 -1.6584 32 1 5.9593 -0.1711 0.1151 33 1 6.8110 -0.1562 -1.4478 34 1 8.4526 -1.7936 -0.5688 35 1 7.6008 -1.8086 0.9941 36 1 9.7995 -2.1274 1.1763 37 1 2.1561 -0.1713 -2.0837 38 1 1.4520 -1.6699 -1.4030 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424098327.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:39 Heat of formation + Delta-G solvation = -60.739478 kcal Electronic energy + Delta-G solvation = -17586.751098 eV Core-core repulsion = 14848.895979 eV Total energy + Delta-G solvation = -2737.855120 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09320 -37.76728 -35.59699 -33.16493 -32.91935 -29.75922 -29.71884 -27.53566 -25.51338 -23.74107 -22.69142 -20.79123 -20.49976 -18.99170 -17.48366 -16.59286 -16.38310 -15.43634 -14.84309 -14.37882 -13.92217 -13.83628 -13.74337 -13.61502 -13.35410 -12.98904 -12.58097 -12.48769 -12.29150 -11.95789 -11.61800 -11.35603 -11.19085 -10.92779 -10.88327 -10.80303 -10.28088 -10.10895 -10.09187 -9.39651 -8.71612 -8.57868 -8.40563 -8.23882 -6.43364 -4.13770 2.88725 3.05025 3.39940 3.41465 3.60385 4.23359 4.45161 4.48809 4.61560 4.88713 5.07534 5.11567 5.18444 5.22152 5.33219 5.44069 5.46688 5.48967 5.63423 5.66524 5.69581 5.72015 5.86103 5.89819 6.08261 6.19208 6.32270 6.42545 6.71904 7.21570 7.32924 7.39085 7.65005 7.80992 8.11269 8.37427 8.39723 8.80243 9.58237 10.96964 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.005460 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.113754 B = 5126.552637 C = 5748.340702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.127 4.127 5 C 0.095 3.905 6 N -0.622 5.622 7 C 0.541 3.459 8 O -0.539 6.539 9 C 0.077 3.923 10 H 0.094 0.906 11 N -0.830 5.830 12 C -0.129 4.129 13 C 0.012 3.988 14 C -0.604 4.604 15 H 0.048 0.952 16 C 0.017 3.983 17 N -0.910 5.910 18 Si 1.068 2.932 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.111 3.889 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.346 0.654 31 H 0.352 0.648 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.268 0.732 37 H 0.075 0.925 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 1.030 -0.013 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 H 0.103 0.897 4 C -0.165 4.165 5 C -0.028 4.028 6 N -0.358 5.358 7 C 0.330 3.670 8 O -0.415 6.415 9 C -0.038 4.038 10 H 0.112 0.888 11 N -0.362 5.362 12 C -0.169 4.169 13 C -0.025 4.025 14 C -0.642 4.642 15 H 0.066 0.934 16 C -0.187 4.187 17 N -0.546 5.546 18 Si 0.896 3.104 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.012 4.012 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.566 1.005 0.008 16.597 hybrid contribution -0.697 0.282 -0.502 0.904 sum -17.263 1.287 -0.494 17.318 Atomic orbital electron populations 1.21685 0.93763 1.02153 1.02112 1.22379 0.96113 0.99617 0.94599 0.89651 1.22724 0.95418 1.00188 0.98126 1.22142 0.98571 1.01922 0.80152 1.48455 1.12184 1.68179 1.06979 1.20539 0.84591 0.75803 0.86037 1.90633 1.82978 1.53088 1.14775 1.21459 0.90650 0.96650 0.95001 0.88771 1.58737 1.26603 1.41830 1.09051 1.22237 0.98468 0.95569 1.00647 1.19224 0.91274 0.97393 0.94618 1.21995 1.07754 0.92813 1.41665 0.93397 1.25850 0.95950 1.02533 0.94406 1.70802 1.40783 0.98289 1.44715 0.83550 0.76211 0.74166 0.76441 1.20677 1.21432 1.21436 1.22235 0.83315 0.98057 0.97609 0.92347 0.92104 0.92293 0.89831 0.90547 0.91214 0.90495 0.84033 0.83314 0.92340 0.92575 0.97326 0.97268 0.92125 0.90666 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.30 37.16 0.35 -0.64 16 2 C -0.11 -1.00 3.64 -88.47 -0.32 -1.32 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.13 6.42 -24.89 -0.16 -1.29 16 5 C 0.10 1.15 6.19 -3.06 -0.02 1.13 16 6 N -0.62 -9.13 3.33 -170.51 -0.57 -9.70 16 7 C 0.54 9.80 7.10 -10.98 -0.08 9.72 16 8 O -0.54 -11.32 16.51 5.56 0.09 -11.22 16 9 C 0.08 1.40 2.62 -68.86 -0.18 1.22 16 10 H 0.09 1.62 7.52 -51.93 -0.39 1.23 16 11 N -0.83 -14.94 8.94 -5.65 -0.05 -14.99 16 12 C -0.13 -2.65 4.77 -26.73 -0.13 -2.78 16 13 C 0.01 0.29 4.05 -27.88 -0.11 0.18 16 14 C -0.60 -16.88 9.11 -34.44 -0.31 -17.20 16 15 H 0.05 1.33 7.74 -52.48 -0.41 0.93 16 16 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 17 N -0.91 -27.31 13.65 55.43 0.76 -26.55 16 18 Si 1.07 24.98 29.90 -169.99 -5.08 19.90 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.11 1.34 6.37 -2.53 -0.02 1.33 16 23 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.60 7.99 -51.93 -0.42 0.18 16 28 H 0.07 0.80 7.94 -51.93 -0.41 0.38 16 29 H 0.08 1.00 6.70 -51.93 -0.35 0.66 16 30 H 0.35 6.32 8.58 -39.29 -0.34 5.99 16 31 H 0.35 6.19 7.55 -39.29 -0.30 5.90 16 32 H 0.06 1.16 6.63 -51.93 -0.34 0.82 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.01 0.22 6.74 -51.93 -0.35 -0.13 16 35 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 36 H 0.27 7.96 7.22 -40.82 -0.29 7.67 16 37 H 0.07 0.99 8.04 -51.93 -0.42 0.58 16 38 H 0.06 0.74 8.04 -51.93 -0.42 0.33 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -32.34 306.16 -7.49 -39.83 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.17 Total: 7.39 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.08 Total: -9.27 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.14 Total: -51.24 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.34 -7.49 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098327.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.910 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds