Wall clock time and date at job start Sun Mar 29 2020 22:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 110.88249 * 2 1 4 4 C 1.55155 * 111.00255 * 123.92041 * 2 1 3 5 5 C 1.54337 * 103.02070 * 153.38435 * 4 2 1 6 6 N 1.47021 * 107.26261 * 338.14065 * 5 4 2 7 7 C 1.34777 * 125.65024 * 178.85492 * 6 5 4 8 8 O 1.21283 * 120.00463 * 179.69059 * 7 6 5 9 9 C 1.50700 * 119.99675 * 359.41182 * 7 6 5 10 10 H 1.09003 * 109.47353 * 320.27278 * 9 7 6 11 11 N 1.46901 * 109.47063 * 200.27767 * 9 7 6 12 12 C 1.53003 * 109.47432 * 80.27730 * 9 7 6 13 13 C 1.52996 * 109.47202 * 184.99824 * 12 9 7 14 14 C 1.50696 * 109.47057 * 180.02562 * 13 12 9 15 15 H 1.08004 * 120.00067 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00375 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99722 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00539 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47180 * 89.99688 * 18 16 14 20 20 H 1.48500 * 109.47205 * 210.00003 * 18 16 14 21 21 H 1.48505 * 109.46853 * 330.00016 * 18 16 14 22 22 C 1.47426 * 108.70410 * 358.58246 * 6 5 4 23 23 H 1.08997 * 109.46963 * 183.88714 * 1 2 3 24 24 H 1.09002 * 109.47008 * 303.88534 * 1 2 3 25 25 H 1.08994 * 109.46884 * 63.88352 * 1 2 3 26 26 H 1.09005 * 110.72236 * 271.93669 * 4 2 1 27 27 H 1.08996 * 110.72658 * 35.21294 * 4 2 1 28 28 H 1.08996 * 109.99222 * 218.66804 * 5 4 2 29 29 H 1.09001 * 109.78136 * 97.49276 * 5 4 2 30 30 H 1.00901 * 111.00196 * 176.04110 * 11 9 7 31 31 H 1.00895 * 110.99940 * 299.99965 * 11 9 7 32 32 H 1.08993 * 109.46630 * 305.00221 * 12 9 7 33 33 H 1.09001 * 109.46418 * 64.99919 * 12 9 7 34 34 H 1.09002 * 109.47174 * 300.00121 * 13 12 9 35 35 H 1.08999 * 109.47082 * 59.99947 * 13 12 9 36 36 H 0.96999 * 119.99800 * 179.97438 * 17 16 14 37 37 H 1.09003 * 110.36374 * 143.19460 * 22 6 5 38 38 H 1.09000 * 110.37185 * 265.40949 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8083 1.2020 5 6 3.4658 -1.2796 0.6956 6 7 3.4272 -1.2427 -0.7737 7 6 4.4477 -1.5610 -1.5945 8 8 4.3008 -1.4993 -2.7968 9 6 5.7732 -1.9876 -1.0183 10 1 6.0024 -1.3782 -0.1440 11 7 6.8257 -1.8108 -2.0278 12 6 5.7014 -3.4601 -0.6089 13 6 7.0030 -3.8595 0.0890 14 6 6.9324 -5.3100 0.4916 15 1 6.0475 -5.8889 0.2720 16 6 7.9970 -5.8977 1.1412 17 7 9.0745 -5.1926 1.4090 18 14 7.9093 -7.6955 1.6409 19 1 8.4347 -8.5416 0.5395 20 1 8.7258 -7.9101 2.8626 21 1 6.4976 -8.0640 1.9179 22 6 2.0853 -0.8062 -1.2005 23 1 -0.3633 -1.0253 0.0697 24 1 -0.3633 0.5730 0.8531 25 1 -0.3633 0.4524 -0.9227 26 1 2.1922 -0.1706 2.0796 27 1 1.4468 -1.6636 1.4205 28 1 3.6601 -2.2967 1.0359 29 1 4.2424 -0.6087 1.0629 30 1 7.7337 -2.0287 -1.6456 31 1 6.6361 -2.3659 -2.8487 32 1 4.8636 -3.6071 0.0726 33 1 5.5606 -4.0773 -1.4963 34 1 7.8407 -3.7123 -0.5926 35 1 7.1437 -3.2422 0.9763 36 1 9.8233 -5.6060 1.8664 37 1 2.1560 -0.1713 -2.0837 38 1 1.4525 -1.6699 -1.4048 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424098328.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:40 Heat of formation + Delta-G solvation = -57.101874 kcal Electronic energy + Delta-G solvation = -17530.568246 eV Core-core repulsion = 14792.870864 eV Total energy + Delta-G solvation = -2737.697381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02382 -37.70280 -35.42479 -32.99380 -32.77956 -29.88061 -29.66998 -27.55067 -25.70437 -23.87869 -22.63580 -20.62327 -20.27975 -18.89843 -17.37434 -16.38326 -16.25818 -15.22686 -14.81825 -14.45653 -14.16262 -13.91197 -13.73461 -13.53700 -13.03496 -12.84122 -12.55215 -12.46260 -12.13484 -11.86595 -11.66844 -11.22313 -11.06035 -10.92968 -10.85515 -10.81483 -10.67143 -9.95758 -9.88355 -9.27485 -9.18551 -8.51574 -8.43520 -8.15773 -6.08501 -4.11618 2.96245 3.11655 3.27108 3.33769 3.36758 4.27182 4.39432 4.49475 4.64955 4.96840 5.11000 5.22226 5.22795 5.25068 5.27838 5.48673 5.50033 5.58411 5.68125 5.75569 5.76370 5.79970 5.88970 5.94058 6.11668 6.31882 6.40244 6.56059 6.88438 7.46119 7.52720 7.62514 7.72955 7.88642 7.93266 8.31386 8.47088 8.94274 9.53286 11.02428 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.005296 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.106144 B = 5285.898601 C = 5860.242890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.127 4.127 5 C 0.096 3.904 6 N -0.622 5.622 7 C 0.541 3.459 8 O -0.540 6.540 9 C 0.079 3.921 10 H 0.095 0.905 11 N -0.831 5.831 12 C -0.137 4.137 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.110 3.890 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.354 0.646 31 H 0.345 0.655 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.262 0.738 37 H 0.074 0.926 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.990 9.795 0.325 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.027 4.027 6 N -0.358 5.358 7 C 0.330 3.670 8 O -0.416 6.416 9 C -0.036 4.036 10 H 0.113 0.887 11 N -0.363 5.363 12 C -0.177 4.177 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.013 4.013 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.020 10.562 -0.313 17.555 hybrid contribution 0.226 -2.087 0.591 2.181 sum -13.793 8.474 0.277 16.191 Atomic orbital electron populations 1.21690 0.93822 1.02245 1.02017 1.22364 0.96087 0.99430 0.94728 0.89798 1.22733 0.95636 1.00206 0.97934 1.22137 0.98086 1.02370 0.80145 1.48466 1.12236 1.68143 1.06985 1.20616 0.84830 0.75517 0.86035 1.90630 1.83081 1.53081 1.14825 1.21440 0.88872 0.98092 0.95209 0.88699 1.58744 1.04704 1.64395 1.08492 1.22375 1.02345 0.92166 1.00783 1.19097 0.90401 0.96536 0.95177 1.21177 1.01462 0.95837 1.37677 0.92753 1.25007 0.95405 0.98046 0.95804 1.69955 1.05452 1.36241 1.41565 0.86586 0.78051 0.85227 0.78109 1.20615 1.21139 1.19895 1.22230 0.83472 0.98070 0.97505 0.92270 0.92166 0.92336 0.89974 0.90421 0.90424 0.91174 0.83056 0.84157 0.92542 0.92746 0.96402 0.96333 0.92885 0.90707 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.31 37.16 0.35 -0.64 16 2 C -0.11 -0.96 3.64 -88.47 -0.32 -1.28 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.14 6.42 -24.89 -0.16 -1.30 16 5 C 0.10 1.15 6.20 -3.06 -0.02 1.13 16 6 N -0.62 -9.15 3.33 -170.51 -0.57 -9.71 16 7 C 0.54 9.80 7.10 -10.98 -0.08 9.72 16 8 O -0.54 -11.36 16.51 5.55 0.09 -11.27 16 9 C 0.08 1.42 2.62 -68.86 -0.18 1.24 16 10 H 0.10 1.64 7.45 -51.93 -0.39 1.25 16 11 N -0.83 -15.06 8.94 -5.65 -0.05 -15.11 16 12 C -0.14 -2.78 4.77 -26.73 -0.13 -2.91 16 13 C 0.03 0.61 4.74 -27.89 -0.13 0.48 16 14 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 C 0.11 1.34 6.37 -2.53 -0.02 1.33 16 23 H 0.06 0.41 8.08 -51.93 -0.42 0.00 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.66 7.99 -51.93 -0.42 0.24 16 28 H 0.08 1.00 6.76 -51.93 -0.35 0.65 16 29 H 0.07 0.81 7.83 -51.93 -0.41 0.40 16 30 H 0.35 6.34 7.55 -39.29 -0.30 6.04 16 31 H 0.35 6.32 8.58 -39.29 -0.34 5.98 16 32 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 38 H 0.06 0.77 8.04 -51.93 -0.42 0.36 16 LS Contribution 307.41 15.07 4.63 4.63 Total: -1.00 -31.50 307.41 -7.51 -39.01 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.23 Total: 6.91 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.10 Total: -5.40 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.12 Total: -50.14 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.50 -7.51 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098328.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.094 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds