Wall clock time and date at job start Sun Mar 29 2020 22:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.00205 * 2 1 4 4 C 1.54330 * 109.88049 * 238.90315 * 2 1 3 5 5 C 1.55156 * 102.94330 * 262.77673 * 4 2 1 6 6 C 1.55133 * 101.48462 * 324.33363 * 5 4 2 7 7 N 1.47026 * 109.88317 * 121.10016 * 2 1 3 8 8 C 1.34777 * 125.64482 * 300.43589 * 7 2 1 9 9 O 1.21277 * 120.00027 * 0.02562 * 8 7 2 10 10 C 1.50700 * 119.99986 * 180.02562 * 8 7 2 11 11 H 1.09001 * 109.47087 * 40.00373 * 10 8 7 12 12 N 1.46905 * 109.47121 * 160.00176 * 10 8 7 13 13 C 1.52998 * 109.47064 * 280.00094 * 10 8 7 14 14 C 1.53004 * 109.47139 * 174.99796 * 13 10 8 15 15 C 1.50698 * 109.47137 * 179.97438 * 14 13 10 16 16 H 1.08002 * 120.00164 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00019 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00123 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00122 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47051 * 60.00237 * 19 17 15 21 21 H 1.48502 * 109.46995 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46717 * 299.99835 * 19 17 15 23 23 H 1.09000 * 109.46935 * 298.90168 * 1 2 3 24 24 H 1.08998 * 109.47030 * 58.90415 * 1 2 3 25 25 H 1.09002 * 109.46923 * 178.90397 * 1 2 3 26 26 H 1.08994 * 110.71794 * 21.14020 * 4 2 1 27 27 H 1.09006 * 110.71620 * 144.23754 * 4 2 1 28 28 H 1.08998 * 111.00940 * 82.57081 * 5 4 2 29 29 H 1.09002 * 111.00614 * 206.43132 * 5 4 2 30 30 H 1.09007 * 110.49925 * 278.45056 * 6 5 4 31 31 H 1.09005 * 110.34521 * 156.06203 * 6 5 4 32 32 H 1.00901 * 110.99869 * 60.00289 * 12 10 8 33 33 H 1.00896 * 110.99543 * 183.95412 * 12 10 8 34 34 H 1.08995 * 109.47368 * 294.99520 * 13 10 8 35 35 H 1.09001 * 109.47446 * 54.99927 * 13 10 8 36 36 H 1.08994 * 109.47287 * 300.00153 * 14 13 10 37 37 H 1.09004 * 109.46568 * 60.00209 * 14 13 10 38 38 H 0.96998 * 120.00540 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2428 5 6 2.3518 -2.1695 -0.6924 6 6 2.8613 -1.8466 0.7368 7 7 2.0300 -0.7142 1.1839 8 6 1.7754 -0.3846 2.4657 9 8 1.0786 0.5755 2.7180 10 6 2.3565 -1.2089 3.5854 11 1 3.3791 -1.4918 3.3354 12 7 2.3556 -0.4208 4.8252 13 6 1.5122 -2.4696 3.7818 14 6 2.1712 -3.3663 4.8319 15 6 1.3392 -4.6077 5.0259 16 1 0.4314 -4.7438 4.4568 17 6 1.7369 -5.5699 5.9298 18 7 2.8420 -5.4040 6.6232 19 14 0.7059 -7.1091 6.1697 20 1 0.6075 -7.8444 4.8833 21 1 1.3455 -7.9793 7.1890 22 1 -0.6543 -6.7273 6.6272 23 1 -0.3633 0.4967 0.8997 24 1 -0.3633 0.5308 -0.8800 25 1 -0.3633 -1.0275 -0.0197 26 1 1.2918 -0.7890 -2.0200 27 1 2.9640 -0.2813 -1.6201 28 1 1.4452 -2.7737 -0.6604 29 1 3.1270 -2.6619 -1.2796 30 1 3.9124 -1.5589 0.7115 31 1 2.7178 -2.7049 1.3932 32 1 1.4183 -0.1463 5.0784 33 1 2.7992 -0.9279 5.5762 34 1 0.5139 -2.1896 4.1181 35 1 1.4395 -3.0091 2.8375 36 1 3.1694 -3.6464 4.4957 37 1 2.2438 -2.8268 5.7763 38 1 3.1217 -6.0806 7.2595 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424144977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:42 Heat of formation + Delta-G solvation = -75.537764 kcal Electronic energy + Delta-G solvation = -17821.911471 eV Core-core repulsion = 15083.414650 eV Total energy + Delta-G solvation = -2738.496821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35872 -38.74172 -37.07544 -34.86839 -32.87554 -31.99984 -31.71739 -28.22614 -26.79344 -25.90280 -23.73623 -22.32055 -21.42668 -19.96437 -18.82711 -18.21051 -17.12712 -16.71181 -16.47770 -15.91295 -15.63165 -15.32867 -14.74863 -14.65170 -14.21373 -14.07093 -13.96490 -13.58023 -13.39906 -13.17246 -12.92515 -12.85922 -12.65877 -12.53618 -12.06515 -11.78903 -11.72009 -11.66880 -11.49835 -11.33400 -10.68445 -10.56427 -9.73793 -9.62122 -8.22033 -6.32919 1.39525 1.41185 1.49225 1.58392 1.95208 2.39484 3.11411 3.41597 3.66629 3.72154 3.85928 4.02826 4.08073 4.20789 4.23857 4.37028 4.47324 4.58016 4.62924 4.77176 4.81210 4.90000 4.97006 5.05183 5.07452 5.14956 5.25163 5.35373 5.44317 5.52758 5.62454 5.78680 6.03693 6.19552 6.43758 6.49523 6.81634 7.15903 7.36257 8.88629 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028107 B = 0.005782 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.955926 B = 4841.756886 C = 5290.674123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.065 0.935 4 C -0.116 4.116 5 C -0.125 4.125 6 C 0.082 3.918 7 N -0.616 5.616 8 C 0.537 3.463 9 O -0.571 6.571 10 C 0.085 3.915 11 H 0.103 0.897 12 N -0.830 5.830 13 C -0.117 4.117 14 C 0.033 3.967 15 C -0.546 4.546 16 H 0.054 0.946 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.959 3.041 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.036 0.964 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.344 0.656 33 H 0.353 0.647 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 6.245 -16.545 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.083 0.917 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.040 4.040 7 N -0.350 5.350 8 C 0.326 3.674 9 O -0.451 6.451 10 C -0.030 4.030 11 H 0.121 0.879 12 N -0.361 5.361 13 C -0.157 4.157 14 C -0.005 4.005 15 C -0.584 4.584 16 H 0.072 0.928 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.197 1.197 23 H 0.055 0.945 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.294 7.229 -16.611 18.118 hybrid contribution -0.989 -1.552 1.159 2.175 sum -0.694 5.676 -15.452 16.476 Atomic orbital electron populations 1.22091 0.95142 1.01999 1.02353 1.21774 0.94648 0.96312 0.85241 0.91696 1.22708 1.02907 0.94647 0.95063 1.22815 1.02673 0.97216 0.93533 1.22755 0.95350 0.88444 0.97466 1.48661 1.50612 1.31222 1.04516 1.20421 0.79834 0.84023 0.83140 1.90591 1.40233 1.30307 1.83931 1.21356 1.00513 0.91062 0.90082 0.87928 1.58757 1.25925 1.45664 1.05799 1.22109 0.98060 0.95014 1.00536 1.18946 0.95042 0.93317 0.93161 1.21560 1.09057 1.05005 1.22811 0.92800 1.25857 0.96258 1.01674 0.95340 1.70054 1.24153 1.36283 1.26113 0.85595 0.78791 0.79009 0.78234 1.19108 1.20700 1.19711 0.94486 0.89385 0.92737 0.88059 0.88913 0.90904 0.87173 0.89724 0.90984 0.84345 0.83202 0.94012 0.91779 0.97917 0.98011 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.08 71.98 0.65 -3.07 16 2 C 0.12 2.80 3.49 45.34 0.16 2.95 16 3 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.12 -1.62 6.49 31.78 0.21 -1.42 16 5 C -0.12 -1.91 7.10 32.06 0.23 -1.69 16 6 C 0.08 1.80 6.40 86.94 0.56 2.36 16 7 N -0.62 -17.29 3.08 -787.61 -2.42 -19.72 16 8 C 0.54 19.19 6.88 87.66 0.60 19.80 16 9 O -0.57 -23.83 15.13 -3.02 -0.05 -23.87 16 10 C 0.09 3.07 2.48 44.17 0.11 3.18 16 11 H 0.10 3.52 7.67 -2.39 -0.02 3.50 16 12 N -0.83 -30.49 8.94 -171.79 -1.54 -32.02 16 13 C -0.12 -4.78 4.64 30.59 0.14 -4.64 16 14 C 0.03 1.62 4.74 29.85 0.14 1.76 16 15 C -0.55 -30.22 9.11 25.60 0.23 -29.99 16 16 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 17 C 0.01 0.41 5.46 84.65 0.46 0.87 16 18 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 19 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H 0.04 1.13 6.70 -2.39 -0.02 1.11 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.10 1.07 7.83 -2.39 -0.02 1.05 16 27 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.07 1.83 6.06 -2.38 -0.01 1.81 16 32 H 0.34 12.85 8.58 -89.69 -0.77 12.08 16 33 H 0.35 12.94 7.55 -89.70 -0.68 12.26 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 2.49 6.61 -2.39 -0.02 2.48 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.00 0.08 6.87 -2.39 -0.02 0.07 16 38 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -67.15 304.35 1.41 -65.75 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.39 Total: 28.50 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 3.49 Total: -9.87 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -3.67 Total: -105.85 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.87 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -67.15 1.41 -65.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424144977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.789 kcal (2) G-P(sol) polarization free energy of solvation -67.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds