Wall clock time and date at job start Sun Mar 29 2020 22:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.02063 * 2 1 4 4 C 1.53871 * 110.03371 * 121.44737 * 2 1 3 5 5 C 1.54268 * 106.60126 * 119.28079 * 4 2 1 6 6 C 1.54891 * 104.19147 * 23.61207 * 5 4 2 7 7 H 1.09006 * 110.91619 * 80.44636 * 6 5 4 8 8 N 1.46905 * 110.75359 * 203.74131 * 6 5 4 9 9 C 1.46906 * 110.99995 * 169.37605 * 8 6 5 10 10 C 1.46897 * 111.00158 * 293.32864 * 8 6 5 11 11 C 1.50694 * 109.47330 * 170.00077 * 10 8 6 12 12 O 1.21299 * 120.00004 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00346 * 179.97438 * 11 10 8 14 14 C 1.37099 * 120.00249 * 179.97438 * 13 11 10 15 15 H 1.07996 * 120.00067 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99699 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00513 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99400 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47382 * 60.00299 * 18 16 14 20 20 H 1.48507 * 109.46799 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47394 * 299.99650 * 18 16 14 22 22 C 1.54269 * 110.03097 * 238.61206 * 2 1 3 23 23 H 1.08998 * 109.47480 * 181.38605 * 1 2 3 24 24 H 1.08996 * 109.47135 * 301.38742 * 1 2 3 25 25 H 1.09007 * 109.47272 * 61.38719 * 1 2 3 26 26 H 1.08997 * 110.03316 * 238.56864 * 4 2 1 27 27 H 1.09001 * 110.03381 * 359.94975 * 4 2 1 28 28 H 1.08994 * 110.48824 * 264.93324 * 5 4 2 29 29 H 1.08995 * 110.48710 * 142.28649 * 5 4 2 30 30 H 1.08992 * 109.47459 * 183.95199 * 9 8 6 31 31 H 1.09004 * 109.47040 * 303.95350 * 9 8 6 32 32 H 1.09000 * 109.47033 * 63.95302 * 9 8 6 33 33 H 1.09009 * 109.47296 * 290.00003 * 10 8 6 34 34 H 1.09002 * 109.47055 * 49.99701 * 10 8 6 35 35 H 0.96996 * 119.99759 * 0.02562 * 13 11 10 36 36 H 0.96996 * 120.00555 * 180.02562 * 17 16 14 37 37 H 1.09004 * 110.48443 * 98.42783 * 22 2 1 38 38 H 1.09001 * 110.48734 * 335.78445 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0571 -0.7542 1.2333 5 6 2.8874 -1.9411 0.7025 6 6 3.3136 -1.5004 -0.7199 7 1 4.1717 -0.8295 -0.6787 8 7 3.6085 -2.6686 -1.5604 9 6 3.7668 -2.2782 -2.9677 10 6 4.7983 -3.3799 -1.0744 11 6 4.9283 -4.6949 -1.7988 12 8 4.1104 -5.0086 -2.6378 13 7 5.9539 -5.5221 -1.5152 14 6 6.0719 -6.7187 -2.1738 15 1 5.3432 -6.9983 -2.9203 16 6 7.1290 -7.5716 -1.8810 17 7 8.0153 -7.2316 -0.9723 18 14 7.2900 -9.2017 -2.7790 19 1 7.4233 -8.9527 -4.2368 20 1 8.4926 -9.9210 -2.2872 21 1 6.0821 -10.0276 -2.5262 22 6 2.0584 -0.7549 -1.2373 23 1 -0.3634 -1.0273 0.0249 24 1 -0.3633 0.5352 0.8772 25 1 -0.3634 0.4922 -0.9022 26 1 2.6867 -0.0963 1.8323 27 1 1.2229 -1.1195 1.8323 28 1 2.2771 -2.8429 0.6556 29 1 3.7636 -2.1045 1.3298 30 1 3.9146 -3.1694 -3.5776 31 1 2.8718 -1.7535 -3.3021 32 1 4.6314 -1.6220 -3.0677 33 1 5.6851 -2.7737 -1.2599 34 1 4.7006 -3.5626 -0.0043 35 1 6.6082 -5.2711 -0.8445 36 1 8.7535 -7.8269 -0.7682 37 1 2.3296 -0.0526 -2.0255 38 1 1.3142 -1.4652 -1.5974 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429574703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:12 Heat of formation + Delta-G solvation = -47.749334 kcal Electronic energy + Delta-G solvation = -17502.371854 eV Core-core repulsion = 14765.080029 eV Total energy + Delta-G solvation = -2737.291825 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.24002 -37.92236 -35.29511 -33.75184 -31.20105 -30.59105 -28.90024 -27.18519 -25.63843 -24.36146 -22.84109 -19.80842 -19.66357 -18.93882 -17.78055 -16.18764 -16.05622 -15.25410 -14.63425 -14.45423 -14.05906 -13.69394 -13.49208 -13.36605 -13.06375 -12.81595 -12.39724 -12.06057 -11.69992 -11.46172 -11.38482 -11.10277 -10.88838 -10.76094 -10.70707 -10.63402 -10.48811 -10.40849 -10.34899 -10.17170 -9.42570 -8.36845 -7.92851 -7.74795 -6.37641 -3.78302 3.22775 3.27964 3.32531 3.96474 4.05331 4.28803 4.54076 4.69415 4.86815 5.13738 5.28035 5.31324 5.34709 5.40979 5.52463 5.60788 5.62543 5.74547 5.81511 5.83443 5.89306 5.98259 6.04444 6.06925 6.07566 6.14041 6.26952 6.32718 6.42607 6.43878 6.65571 7.39973 7.55512 7.59226 8.11072 8.67029 9.22519 9.59571 10.12083 10.80233 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052634 B = 0.004534 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.847604 B = 6173.668335 C = 6385.485599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.067 0.933 4 C -0.118 4.118 5 C -0.117 4.117 6 C 0.076 3.924 7 H 0.042 0.958 8 N -0.511 5.511 9 C 0.022 3.978 10 C 0.045 3.955 11 C 0.445 3.555 12 O -0.578 6.578 13 N -0.566 5.566 14 C -0.298 4.298 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 0.930 3.070 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.111 4.111 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.011 0.989 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.059 0.941 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 13.694 3.908 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.085 0.915 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.033 4.033 7 H 0.060 0.940 8 N -0.235 5.235 9 C -0.126 4.126 10 C -0.086 4.086 11 C 0.231 3.769 12 O -0.462 6.462 13 N -0.203 5.203 14 C -0.428 4.428 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.545 5.545 18 Si 0.757 3.243 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.148 4.148 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.965 13.046 3.433 16.197 hybrid contribution 1.376 -0.085 0.023 1.378 sum -7.590 12.961 3.456 15.412 Atomic orbital electron populations 1.21872 0.95078 1.01941 1.01163 1.21698 0.95679 0.99013 0.95111 0.91465 1.22184 0.99394 0.96972 0.97085 1.22400 0.99642 0.98645 0.94815 1.22671 0.96446 0.90816 0.93379 0.93996 1.61692 1.36682 1.22642 1.02448 1.22540 0.98810 1.01597 0.89672 1.21872 0.91518 0.95082 1.00157 1.19776 0.83985 0.86282 0.86869 1.90475 1.43178 1.76203 1.36318 1.41864 1.23874 1.17457 1.37071 1.19651 1.10121 0.93924 1.19109 0.88000 1.25245 0.95666 0.99931 0.97096 1.69602 1.14323 1.38306 1.32262 0.85928 0.77605 0.81278 0.79460 1.19953 1.21017 1.19908 1.22486 0.97319 0.98370 0.96668 0.92359 0.93023 0.92922 0.92199 0.91659 0.90282 0.91962 0.88695 0.92129 0.97026 0.93740 0.89421 0.77534 0.91879 0.92186 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.84 37.16 0.33 -0.96 16 2 C -0.10 -0.96 3.50 -89.50 -0.31 -1.28 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -1.22 6.46 -25.61 -0.17 -1.38 16 5 C -0.12 -1.49 5.49 -25.07 -0.14 -1.62 16 6 C 0.08 1.05 2.59 -65.72 -0.17 0.88 16 7 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 8 N -0.51 -8.94 4.39 -233.92 -1.03 -9.96 16 9 C 0.02 0.37 8.97 60.07 0.54 0.91 16 10 C 0.05 0.85 5.35 -4.98 -0.03 0.82 16 11 C 0.45 10.79 7.51 -10.99 -0.08 10.71 16 12 O -0.58 -15.85 13.89 5.54 0.08 -15.77 16 13 N -0.57 -14.64 5.29 -10.96 -0.06 -14.70 16 14 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 15 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 18 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 C -0.11 -1.33 4.50 -25.07 -0.11 -1.44 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 30 H 0.09 1.95 5.88 -51.93 -0.31 1.64 16 31 H 0.06 0.90 6.73 -51.93 -0.35 0.55 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.04 0.78 8.12 -51.92 -0.42 0.36 16 34 H 0.09 1.51 6.85 -51.93 -0.36 1.16 16 35 H 0.39 9.71 7.90 -40.82 -0.32 9.38 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 37 H 0.06 0.67 7.89 -51.93 -0.41 0.26 16 38 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -30.35 303.11 -7.39 -37.74 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.27 Total: 7.47 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.38 Total: -1.45 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.36 Total: -48.82 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.08 Total: -15.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.35 -7.39 -37.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429574703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.009 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds