Wall clock time and date at job start Sun Mar 29 2020 22:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 110.67265 * 2 1 4 4 C 1.54886 * 110.75733 * 236.76640 * 2 1 3 5 5 C 1.54271 * 104.19682 * 203.74466 * 4 2 1 6 6 C 1.53866 * 106.59800 * 23.60787 * 5 4 2 7 7 H 1.08999 * 110.03118 * 119.33183 * 6 5 4 8 8 N 1.46499 * 110.03280 * 240.71713 * 6 5 4 9 9 C 1.34777 * 120.00065 * 272.90712 * 8 6 5 10 10 O 1.21593 * 119.99923 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00128 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99828 * 180.27942 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.50697 * 109.47491 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99965 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00490 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99545 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00173 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47199 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47080 * 119.99932 * 18 16 14 21 21 H 1.48498 * 109.47127 * 239.99826 * 18 16 14 22 22 C 1.54263 * 106.64215 * 0.02703 * 6 5 4 23 23 H 1.09001 * 109.46808 * 181.77979 * 1 2 3 24 24 H 1.08993 * 109.46929 * 301.77923 * 1 2 3 25 25 H 1.09001 * 109.46680 * 61.78178 * 1 2 3 26 26 H 1.08995 * 110.49035 * 85.06247 * 4 2 1 27 27 H 1.09008 * 110.59680 * 322.47763 * 4 2 1 28 28 H 1.09000 * 110.02541 * 264.32340 * 5 4 2 29 29 H 1.08996 * 110.06916 * 142.91515 * 5 4 2 30 30 H 0.97000 * 120.00386 * 92.91081 * 8 6 5 31 31 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 32 32 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 33 33 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 34 34 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 35 35 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 36 36 H 0.97004 * 119.99855 * 180.02562 * 17 16 14 37 37 H 1.09004 * 110.49021 * 95.04450 * 22 6 5 38 38 H 1.09009 * 110.48833 * 217.68821 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0790 -0.7938 -1.2114 5 6 3.4932 -1.2255 -0.7715 6 6 3.4932 -1.2282 0.7672 7 1 3.7128 -2.2291 1.1388 8 7 4.4871 -0.2770 1.2707 9 6 5.7653 -0.6670 1.4453 10 8 6.0936 -1.8083 1.1844 11 7 6.6795 0.2079 1.9090 12 6 8.0702 -0.2144 2.0929 13 6 8.8951 0.9619 2.6190 14 6 10.3255 0.5273 2.8088 15 1 10.6171 -0.4866 2.5778 16 6 11.2621 1.4241 3.2774 17 7 10.9072 2.6589 3.5582 18 14 13.0350 0.8852 3.5134 19 1 13.1740 -0.5421 3.1280 20 1 13.9226 1.7162 2.6609 21 1 13.4180 1.0533 4.9382 22 6 2.0791 -0.7988 1.2097 23 1 -0.3633 -1.0272 0.0319 24 1 -0.3633 0.5412 0.8736 25 1 -0.3633 0.4859 -0.9056 26 1 2.1320 -0.1555 -2.0934 27 1 1.4581 -1.6673 -1.4107 28 1 4.2326 -0.5164 -1.1437 29 1 3.7128 -2.2250 -1.1467 30 1 4.2252 0.6336 1.4785 31 1 6.4176 1.1185 2.1168 32 1 8.1090 -1.0347 2.8097 33 1 8.4784 -0.5464 1.1384 34 1 8.8563 1.7822 1.9022 35 1 8.4869 1.2939 3.5736 36 1 11.5662 3.2900 3.8876 37 1 1.4580 -1.6733 1.4034 38 1 2.1325 -0.1641 2.0943 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436337919.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:34 Heat of formation + Delta-G solvation = -62.973383 kcal Electronic energy + Delta-G solvation = -16904.347761 eV Core-core repulsion = 14166.395772 eV Total energy + Delta-G solvation = -2737.951989 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90473 -38.16778 -34.81345 -33.74725 -32.76860 -30.72578 -29.46700 -28.16890 -25.14769 -24.39856 -21.34491 -20.63238 -20.27581 -20.01641 -18.01399 -16.48359 -16.15175 -15.39478 -14.99886 -14.75260 -14.45334 -14.10327 -13.75438 -13.46947 -13.18443 -12.99241 -12.36064 -12.27002 -11.93977 -11.45832 -11.18821 -11.15125 -11.03018 -10.90217 -10.75881 -10.65701 -10.59216 -10.29229 -9.86370 -9.52267 -9.21753 -8.93079 -8.46341 -8.19994 -6.07491 -4.09818 3.13331 3.29894 3.37497 3.43281 3.64935 4.36555 4.38830 4.42217 4.59364 4.78723 5.14790 5.19063 5.29741 5.31158 5.32642 5.33613 5.53948 5.57221 5.67015 5.72024 5.89034 5.90821 6.06858 6.12906 6.24272 6.35878 6.43636 6.77429 6.82853 7.05805 7.31959 7.60475 7.66207 7.92258 8.29007 8.50624 8.95809 9.07285 9.54878 11.04279 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.062521 B = 0.003578 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.741125 B = 7823.200901 C = 8023.775651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.119 4.119 5 C -0.136 4.136 6 C 0.160 3.840 7 H 0.088 0.912 8 N -0.747 5.747 9 C 0.697 3.303 10 O -0.599 6.599 11 N -0.740 5.740 12 C 0.140 3.860 13 C 0.013 3.987 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.127 4.127 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.392 0.608 31 H 0.392 0.608 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.079 0.921 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.295 -3.030 -6.343 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.157 4.157 5 C -0.175 4.175 6 C 0.055 3.945 7 H 0.106 0.894 8 N -0.403 5.403 9 C 0.397 3.603 10 O -0.478 6.478 11 N -0.393 5.393 12 C 0.018 3.982 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.165 4.165 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.226 0.774 31 H 0.225 0.775 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.871 -3.951 -6.507 21.279 hybrid contribution 0.799 0.755 0.343 1.151 sum -19.072 -3.196 -6.164 20.297 Atomic orbital electron populations 1.21761 0.94983 1.01789 1.01570 1.22161 0.95354 0.99265 0.95000 0.90581 1.22435 0.96123 0.99602 0.97541 1.22627 0.96967 1.02203 0.95695 1.21331 0.86536 0.93619 0.93064 0.89418 1.45312 1.07906 1.14786 1.72321 1.16113 0.80609 0.85098 0.78465 1.90878 1.79775 1.18636 1.58498 1.45542 1.10360 1.13734 1.69702 1.21568 0.77030 0.99519 1.00130 1.19328 0.94293 0.92347 0.96531 1.21102 0.93128 0.97575 1.44002 0.92170 1.25001 0.99202 0.94874 0.95291 1.69970 1.34416 1.03988 1.45018 0.86455 0.84460 0.78895 0.77753 1.19562 1.20962 1.20953 1.22776 0.95080 1.00546 0.98103 0.92613 0.92713 0.92732 0.91805 0.91572 0.91178 0.91291 0.77432 0.77470 0.92848 0.92866 0.95998 0.95991 0.92944 0.90274 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.27 37.16 0.34 -0.58 16 2 C -0.10 -0.76 3.50 -88.56 -0.31 -1.07 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -1.00 6.27 -25.07 -0.16 -1.16 16 5 C -0.14 -1.50 6.59 -25.62 -0.17 -1.67 16 6 C 0.16 1.86 3.23 -66.82 -0.22 1.65 16 7 H 0.09 1.20 7.59 -51.93 -0.39 0.81 16 8 N -0.75 -9.76 4.94 -57.59 -0.28 -10.04 16 9 C 0.70 12.54 8.56 -86.92 -0.74 11.80 16 10 O -0.60 -13.20 16.01 5.28 0.08 -13.11 16 11 N -0.74 -13.45 5.56 -65.23 -0.36 -13.82 16 12 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 13 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 14 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 15 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 18 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.13 -1.07 5.89 -25.01 -0.15 -1.22 16 23 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.51 8.05 -51.92 -0.42 0.09 16 28 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.39 4.07 8.58 -40.82 -0.35 3.72 16 31 H 0.39 6.13 8.49 -40.82 -0.35 5.78 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.08 0.61 8.03 -51.93 -0.42 0.19 16 38 H 0.07 0.59 7.98 -51.92 -0.41 0.18 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -32.10 313.32 -8.62 -40.72 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.52 Total: 2.96 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.97 Total: -2.37 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.09 Total: -49.46 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.10 -8.62 -40.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436337919.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.252 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds