Wall clock time and date at job start Sun Mar 29 2020 22:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 112.74251 * 2 1 4 4 C 1.53495 * 113.46751 * 229.17061 * 2 1 3 5 5 C 1.53756 * 83.26192 * 218.98774 * 4 2 1 6 6 N 1.47068 * 87.88747 * 26.23998 * 5 4 2 7 7 C 1.34776 * 136.05907 * 152.95863 * 6 5 4 8 8 O 1.21588 * 119.99758 * 179.63608 * 7 6 5 9 9 N 1.34776 * 120.00057 * 359.63515 * 7 6 5 10 10 C 1.46495 * 120.00165 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47262 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47258 * 59.99767 * 11 10 9 13 13 C 1.53001 * 109.46983 * 300.00007 * 11 10 9 14 14 C 1.50703 * 109.47314 * 180.02562 * 11 10 9 15 15 H 1.07997 * 119.99633 * 4.69879 * 14 11 10 16 16 C 1.37874 * 120.00025 * 184.70074 * 14 11 10 17 17 N 1.31520 * 120.00088 * 159.96342 * 16 14 11 18 18 Si 1.86799 * 120.00286 * 339.96514 * 16 14 11 19 19 H 1.48504 * 109.47022 * 275.38452 * 18 16 14 20 20 H 1.48502 * 109.47168 * 35.37893 * 18 16 14 21 21 H 1.48494 * 109.47366 * 155.38041 * 18 16 14 22 22 H 1.09000 * 109.47489 * 308.76973 * 1 2 3 23 23 H 1.09009 * 109.46650 * 68.76026 * 1 2 3 24 24 H 1.08996 * 109.47749 * 188.76133 * 1 2 3 25 25 H 1.08997 * 114.21077 * 332.74589 * 4 2 1 26 26 H 1.09009 * 114.20074 * 105.57215 * 4 2 1 27 27 H 1.09004 * 113.46614 * 271.50850 * 5 4 2 28 28 H 1.08991 * 113.55551 * 140.98668 * 5 4 2 29 29 H 0.97002 * 119.99629 * 359.97438 * 9 7 6 30 30 H 1.08998 * 109.47361 * 59.99831 * 10 9 7 31 31 H 1.09004 * 109.46809 * 300.00048 * 10 9 7 32 32 H 1.09004 * 109.47595 * 171.19892 * 12 11 10 33 33 H 1.09005 * 109.47137 * 291.20274 * 12 11 10 34 34 H 1.08997 * 109.47147 * 51.20324 * 12 11 10 35 35 H 1.09006 * 109.47246 * 299.99648 * 13 11 10 36 36 H 1.08996 * 109.47365 * 60.00050 * 13 11 10 37 37 H 1.09001 * 109.47077 * 180.02562 * 13 11 10 38 38 H 0.97000 * 120.00269 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9513 1.0052 0.0000 4 6 2.1412 -0.9206 -1.0654 5 6 3.1581 -1.2303 0.0456 6 7 2.1156 -0.8805 1.0222 7 6 1.8272 -1.2151 2.2955 8 8 0.8590 -0.7288 2.8474 9 7 2.6118 -2.0887 2.9570 10 6 2.2980 -2.4528 4.3409 11 6 3.3365 -3.4526 4.8532 12 6 4.7274 -2.8179 4.7957 13 6 3.3119 -4.7071 3.9777 14 6 3.0133 -3.8277 6.2766 15 1 2.1123 -3.4558 6.7417 16 6 3.8679 -4.6454 6.9850 17 7 3.8224 -4.6631 8.2993 18 14 5.0904 -5.7283 6.0783 19 1 4.4271 -6.9948 5.6768 20 1 5.5771 -5.0191 4.8677 21 1 6.2389 -6.0318 6.9693 22 1 -0.3634 0.6435 0.8012 23 1 -0.3633 0.3723 -0.9580 24 1 -0.3634 -1.0156 0.1565 25 1 1.5086 -1.7632 -1.3443 26 1 2.5640 -0.3943 -1.9213 27 1 4.0094 -0.5496 0.0569 28 1 3.4551 -2.2782 0.0844 29 1 3.3839 -2.4769 2.5165 30 1 1.3073 -2.9054 4.3818 31 1 2.3151 -1.5589 4.9645 32 1 5.4434 -3.4650 5.3024 33 1 5.0258 -2.6902 3.7551 34 1 4.7039 -1.8461 5.2888 35 1 2.3210 -5.1595 4.0186 36 1 3.5454 -4.4363 2.9480 37 1 4.0515 -5.4197 4.3429 38 1 4.4239 -5.2381 8.7978 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:10 Heat of formation + Delta-G solvation = 18.753682 kcal Electronic energy + Delta-G solvation = -17927.897955 eV Core-core repulsion = 15193.489918 eV Total energy + Delta-G solvation = -2734.408037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41768 -38.22060 -36.44753 -33.23776 -31.58795 -30.33067 -29.19332 -26.33035 -25.70217 -24.76489 -23.40910 -21.97661 -19.38333 -19.02395 -17.69919 -16.16220 -15.94363 -15.58145 -15.12755 -14.50970 -14.05559 -13.90350 -13.43481 -13.20209 -12.87411 -12.71508 -12.46779 -12.21074 -11.98115 -11.95010 -11.76125 -11.65864 -11.23942 -10.61496 -10.41175 -10.28546 -10.19818 -10.01670 -9.67332 -9.18985 -8.74951 -8.68187 -8.37538 -8.22001 -6.15986 -4.08826 2.71291 3.24721 3.32826 3.38543 3.59034 4.14079 4.32369 4.37260 4.82982 4.92099 5.11480 5.14546 5.24796 5.26598 5.40334 5.52536 5.76163 5.78026 5.91279 6.04603 6.09579 6.11872 6.28388 6.39691 6.54028 6.57802 6.67091 6.74864 6.86852 7.05546 7.27774 7.46373 7.54169 7.76256 8.37860 8.48965 8.92419 9.02203 9.50658 10.97048 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045234 B = 0.005751 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.848932 B = 4867.214360 C = 5218.259146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.150 3.850 3 H 0.086 0.914 4 C -0.152 4.152 5 C 0.097 3.903 6 N -0.669 5.669 7 C 0.728 3.272 8 O -0.591 6.591 9 N -0.736 5.736 10 C 0.161 3.839 11 C 0.030 3.970 12 C -0.139 4.139 13 C -0.145 4.145 14 C -0.516 4.516 15 H 0.076 0.924 16 C 0.079 3.921 17 N -0.885 5.885 18 Si 0.875 3.125 19 H -0.285 1.285 20 H -0.247 1.247 21 H -0.303 1.303 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.391 0.609 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.026 0.974 37 H 0.042 0.958 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 5.925 -19.450 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 H 0.104 0.896 4 C -0.190 4.190 5 C -0.026 4.026 6 N -0.411 5.411 7 C 0.432 3.568 8 O -0.469 6.469 9 N -0.390 5.390 10 C 0.038 3.962 11 C 0.029 3.971 12 C -0.197 4.197 13 C -0.202 4.202 14 C -0.554 4.554 15 H 0.094 0.906 16 C -0.124 4.124 17 N -0.521 5.521 18 Si 0.706 3.294 19 H -0.212 1.212 20 H -0.173 1.173 21 H -0.231 1.231 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.225 0.775 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.134 6.137 -18.548 19.538 hybrid contribution 1.172 -0.932 -0.454 1.565 sum 1.038 5.205 -19.002 19.730 Atomic orbital electron populations 1.21904 0.94173 1.03156 1.01806 1.22416 0.95227 0.94337 0.83402 0.89627 1.23554 0.98610 1.00572 0.96249 1.22895 0.92485 1.01356 0.85902 1.48949 1.31542 1.49451 1.11122 1.15404 0.83025 0.80043 0.78374 1.90894 1.30457 1.59030 1.66514 1.45456 1.30653 1.47003 1.15876 1.21376 0.98910 0.98227 0.77652 1.18706 0.91501 0.90864 0.96068 1.22273 0.98762 1.00884 0.97751 1.22344 1.01020 0.99740 0.97134 1.20669 1.09530 1.31340 0.93859 0.90583 1.24930 0.96275 0.96842 0.94336 1.70022 1.38500 1.37738 1.05845 0.87495 0.80853 0.81290 0.79736 1.21209 1.17250 1.23121 0.91634 0.91778 0.92065 0.88759 0.89535 0.90215 0.90786 0.77516 0.92339 0.92119 0.92670 0.96080 0.93380 0.92968 0.95538 0.93928 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.25 37.15 0.34 -1.35 16 2 C 0.15 1.59 4.67 -72.38 -0.34 1.25 16 3 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.15 -1.14 8.04 -26.08 -0.21 -1.35 16 5 C 0.10 0.91 8.29 -8.36 -0.07 0.84 16 6 N -0.67 -9.25 3.56 -183.01 -0.65 -9.90 16 7 C 0.73 13.45 8.70 -86.92 -0.76 12.69 16 8 O -0.59 -13.20 16.55 5.29 0.09 -13.11 16 9 N -0.74 -13.25 5.01 -65.23 -0.33 -13.58 16 10 C 0.16 3.42 4.49 -4.05 -0.02 3.40 16 11 C 0.03 0.67 0.50 -155.66 -0.08 0.59 16 12 C -0.14 -2.93 7.51 37.15 0.28 -2.65 16 13 C -0.15 -3.01 7.63 37.16 0.28 -2.72 16 14 C -0.52 -14.09 8.60 -34.44 -0.30 -14.39 16 15 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 16 C 0.08 2.22 5.23 -17.82 -0.09 2.13 16 17 N -0.88 -26.58 13.96 55.43 0.77 -25.80 16 18 Si 0.87 21.00 22.98 -169.99 -3.91 17.10 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.25 -5.39 4.61 56.52 0.26 -5.13 16 21 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 26 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.39 6.22 5.96 -40.82 -0.24 5.98 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.05 1.22 4.03 -51.93 -0.21 1.01 16 33 H 0.02 0.37 7.11 -51.93 -0.37 0.00 16 34 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 37 H 0.04 0.92 2.61 -51.93 -0.14 0.78 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 294.34 15.07 4.44 4.44 Total: -1.00 -32.40 294.34 -6.62 -39.02 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.08 Total: 3.39 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.95 Total: -1.55 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.21 Total: -49.29 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -3.91 Total: 17.10 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.40 -6.62 -39.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.778 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds