Wall clock time and date at job start Sun Mar 29 2020 22:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 112.73955 * 2 1 4 4 C 1.53501 * 113.52015 * 130.78865 * 2 1 3 5 5 C 1.53747 * 83.25644 * 88.55348 * 4 2 1 6 6 N 1.47063 * 113.47030 * 229.25233 * 2 1 3 7 7 C 1.34774 * 136.05748 * 92.23856 * 6 2 1 8 8 O 1.21579 * 120.00123 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99898 * 180.02562 * 7 6 2 10 10 C 1.46496 * 120.00258 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47421 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47092 * 60.00300 * 11 10 9 13 13 C 1.52997 * 109.47143 * 300.00171 * 11 10 9 14 14 C 1.50706 * 109.46925 * 180.02562 * 11 10 9 15 15 H 1.07999 * 120.00196 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47555 * 90.00165 * 18 16 14 20 20 H 1.48503 * 109.46814 * 210.00053 * 18 16 14 21 21 H 1.48496 * 109.47318 * 329.99545 * 18 16 14 22 22 H 1.08999 * 109.46830 * 171.24382 * 1 2 3 23 23 H 1.08997 * 109.47227 * 291.24505 * 1 2 3 24 24 H 1.09002 * 109.47010 * 51.24552 * 1 2 3 25 25 H 1.09003 * 114.20623 * 202.30938 * 4 2 1 26 26 H 1.09001 * 114.20431 * 335.13587 * 4 2 1 27 27 H 1.09007 * 113.46925 * 271.50417 * 5 4 2 28 28 H 1.09004 * 113.55388 * 140.99085 * 5 4 2 29 29 H 0.97008 * 120.00336 * 0.02562 * 9 7 6 30 30 H 1.09004 * 109.46875 * 60.00324 * 10 9 7 31 31 H 1.09004 * 109.47522 * 300.00473 * 10 9 7 32 32 H 1.08992 * 109.47280 * 179.97438 * 12 11 10 33 33 H 1.09002 * 109.46777 * 300.00347 * 12 11 10 34 34 H 1.09000 * 109.47140 * 59.99774 * 12 11 10 35 35 H 1.09004 * 109.47261 * 299.99863 * 13 11 10 36 36 H 1.09002 * 109.47153 * 60.00035 * 13 11 10 37 37 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 38 38 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9513 1.0053 0.0000 4 6 2.1426 -0.9195 1.0656 5 6 2.0352 -1.9770 -0.0452 6 7 2.1157 -0.8805 -1.0220 7 6 2.5357 -0.7440 -2.2953 8 8 2.4618 0.3367 -2.8473 9 7 3.0377 -1.8056 -2.9567 10 6 3.4948 -1.6572 -4.3406 11 6 4.0139 -3.0021 -4.8533 12 6 2.8896 -4.0381 -4.7960 13 6 5.1799 -3.4659 -3.9781 14 6 4.4847 -2.8492 -6.2768 15 1 4.4205 -1.8888 -6.7666 16 6 4.9973 -3.9355 -6.9537 17 7 5.0760 -5.1048 -6.3571 18 14 5.5815 -3.7458 -8.7178 19 1 7.0197 -3.3761 -8.7261 20 1 5.3962 -5.0294 -9.4413 21 1 4.7929 -2.6813 -9.3887 22 1 -0.3633 -1.0157 -0.1564 23 1 -0.3633 0.3724 0.9578 24 1 -0.3633 0.6433 -0.8014 25 1 3.1643 -0.6617 1.3445 26 1 1.4938 -1.1058 1.9215 27 1 1.0783 -2.4990 -0.0565 28 1 2.8869 -2.6562 -0.0838 29 1 3.0964 -2.6680 -2.5165 30 1 4.2956 -0.9188 -4.3816 31 1 2.6640 -1.3272 -4.9643 32 1 3.2592 -4.9960 -5.1617 33 1 2.5494 -4.1485 -3.7663 34 1 2.0588 -3.7077 -5.4195 35 1 5.9810 -2.7278 -4.0190 36 1 4.8398 -3.5764 -2.9484 37 1 5.5494 -4.4242 -4.3431 38 1 5.4370 -5.8689 -6.8332 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:12 Heat of formation + Delta-G solvation = 0.018798 kcal Electronic energy + Delta-G solvation = -17815.823580 eV Core-core repulsion = 15080.603137 eV Total energy + Delta-G solvation = -2735.220443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40708 -38.15496 -36.15703 -33.18948 -31.14858 -29.95628 -28.74659 -25.69797 -25.52337 -24.73215 -24.23327 -21.63395 -18.96658 -18.66241 -17.52698 -16.26871 -15.82438 -15.51832 -14.78111 -14.53219 -13.90423 -13.77557 -13.07485 -12.81285 -12.69139 -12.53379 -12.44515 -12.15001 -11.91203 -11.45295 -11.31252 -11.16862 -10.84123 -10.66849 -10.48964 -10.35603 -10.18128 -9.68197 -9.60198 -9.27415 -8.76490 -8.66654 -8.37885 -8.08404 -5.99817 -4.09588 2.80048 3.30213 3.36966 3.41563 3.67133 4.18272 4.37290 4.49538 4.84090 5.03690 5.09789 5.17778 5.26957 5.38702 5.49060 5.58796 5.80595 5.86533 5.93771 6.17555 6.29977 6.39915 6.54350 6.83774 6.85756 6.97583 7.06012 7.15202 7.39915 7.58511 7.65504 7.72739 8.03485 8.15338 8.41355 8.52670 8.90316 9.11680 9.55977 11.01692 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050393 B = 0.005156 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.496710 B = 5428.805274 C = 5662.512082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.083 0.917 4 C -0.151 4.151 5 C 0.098 3.902 6 N -0.667 5.667 7 C 0.727 3.273 8 O -0.597 6.597 9 N -0.730 5.730 10 C 0.151 3.849 11 C 0.056 3.944 12 C -0.129 4.129 13 C -0.129 4.129 14 C -0.504 4.504 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.393 0.607 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.005 0.995 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.005 0.995 37 H 0.085 0.915 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 3.152 14.525 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.042 3.958 3 H 0.101 0.899 4 C -0.189 4.189 5 C -0.025 4.025 6 N -0.408 5.408 7 C 0.430 3.570 8 O -0.476 6.476 9 N -0.384 5.384 10 C 0.028 3.972 11 C 0.055 3.945 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.227 0.773 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.024 0.976 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.023 0.977 37 H 0.104 0.896 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.141 3.779 13.762 15.537 hybrid contribution 0.305 -0.422 -0.832 0.982 sum -5.836 3.357 12.930 14.578 Atomic orbital electron populations 1.22004 0.94298 1.02747 1.02428 1.22204 0.93701 0.96271 0.83577 0.89905 1.23476 1.02305 0.96916 0.96179 1.22944 1.01799 0.92109 0.85695 1.48903 1.66765 1.13960 1.11201 1.15461 0.78295 0.84824 0.78401 1.90874 1.63637 1.26574 1.66559 1.45454 1.66517 1.10543 1.15858 1.21595 0.97665 1.00279 0.77677 1.18371 0.92382 0.88765 0.95001 1.21808 0.97505 1.03357 0.95991 1.21811 0.98620 1.03330 0.94892 1.20989 1.41003 0.95875 0.96418 0.92405 1.24879 0.95447 0.95188 0.98011 1.69807 1.45941 1.00188 1.36602 0.86563 0.79095 0.77430 0.84735 1.20721 1.21290 1.19895 0.92045 0.91120 0.91830 0.88810 0.89488 0.90234 0.90749 0.77253 0.93003 0.93011 0.89634 0.97639 0.95468 0.95455 0.97652 0.89644 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.79 37.16 0.36 -1.14 16 2 C 0.15 1.69 4.94 -72.41 -0.36 1.33 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.15 -1.26 8.09 -26.08 -0.21 -1.47 16 5 C 0.10 1.03 7.93 -8.39 -0.07 0.96 16 6 N -0.67 -9.99 3.49 -183.06 -0.64 -10.63 16 7 C 0.73 14.42 8.79 -86.92 -0.76 13.66 16 8 O -0.60 -14.21 17.12 5.30 0.09 -14.12 16 9 N -0.73 -14.31 4.96 -65.23 -0.32 -14.64 16 10 C 0.15 3.40 4.50 -4.04 -0.02 3.39 16 11 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 12 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 13 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 14 C -0.50 -13.48 8.01 -34.44 -0.28 -13.75 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 17 N -0.89 -23.87 9.35 55.43 0.52 -23.35 16 18 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H 0.06 0.58 7.02 -51.93 -0.36 0.22 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.51 8.11 -51.93 -0.42 0.09 16 27 H 0.08 0.72 7.28 -51.93 -0.38 0.34 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.39 7.03 5.88 -40.82 -0.24 6.79 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 33 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 37 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 38 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -30.61 303.14 -7.80 -38.41 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.09 Total: 3.30 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.90 Total: 0.51 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.44 Total: -48.62 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.09 Total: -14.12 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.61 -7.80 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.432 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds