Wall clock time and date at job start Sun Mar 29 2020 23:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46746 * 2 1 4 4 C 1.50695 * 109.47010 * 240.00532 * 2 1 3 5 5 H 1.08005 * 120.00001 * 240.00025 * 4 2 1 6 6 C 1.37874 * 120.00409 * 59.99558 * 4 2 1 7 7 N 1.31514 * 120.00209 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00049 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46932 * 90.00453 * 8 6 4 10 10 H 1.48507 * 109.47110 * 209.99962 * 8 6 4 11 11 H 1.48499 * 109.47358 * 330.00271 * 8 6 4 12 12 N 1.46496 * 109.47262 * 119.99840 * 2 1 3 13 13 C 1.34777 * 120.00621 * 275.00192 * 12 2 1 14 14 O 1.21286 * 119.99493 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00186 * 179.97438 * 13 12 2 16 16 H 1.09000 * 110.35848 * 333.42696 * 15 13 12 17 17 C 1.54594 * 110.31055 * 211.28172 * 15 13 12 18 18 C 1.54937 * 102.92802 * 219.12983 * 17 15 13 19 19 N 1.48539 * 103.22431 * 37.41129 * 18 17 15 20 20 C 1.46899 * 110.99894 * 200.28325 * 19 18 17 21 21 C 1.47905 * 105.81826 * 320.79455 * 19 18 17 22 22 H 1.08996 * 110.08220 * 265.88661 * 21 19 18 23 23 C 1.53002 * 109.91077 * 144.68297 * 21 19 18 24 24 H 1.08998 * 109.47253 * 59.99896 * 1 2 3 25 25 H 1.09003 * 109.46746 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47158 * 299.99659 * 1 2 3 27 27 H 0.97002 * 120.00596 * 180.02562 * 7 6 4 28 28 H 0.97008 * 119.99830 * 94.99971 * 12 2 1 29 29 H 1.09003 * 110.72588 * 100.76568 * 17 15 13 30 30 H 1.09008 * 110.87864 * 337.55915 * 17 15 13 31 31 H 1.08990 * 110.67418 * 155.84722 * 18 17 15 32 32 H 1.09001 * 110.66567 * 278.98273 * 18 17 15 33 33 H 1.09002 * 109.47275 * 59.87660 * 20 19 18 34 34 H 1.08998 * 109.47295 * 179.87302 * 20 19 18 35 35 H 1.08996 * 109.47180 * 299.87311 * 20 19 18 36 36 H 1.08993 * 109.47630 * 305.01113 * 23 21 19 37 37 H 1.08999 * 109.47245 * 65.02031 * 23 21 19 38 38 H 1.09007 * 109.47107 * 185.01729 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6308 -1.7564 -3.7121 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0183 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6489 -0.7288 3.5876 16 1 2.4207 -1.7932 3.5305 17 6 2.0189 -0.1124 4.8577 18 6 3.1947 -0.1199 5.8666 19 7 4.3706 0.2085 5.0204 20 6 5.6198 -0.2112 5.6694 21 6 4.1656 -0.5154 3.7470 22 1 4.6749 -1.4786 3.7778 23 6 4.6998 0.3194 2.5813 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.7087 1.1615 -3.4844 28 1 2.2491 -1.6318 1.1526 29 1 1.1966 -0.7300 5.2191 30 1 1.6799 0.9061 4.6681 31 1 3.0485 0.6404 6.6336 32 1 3.3086 -1.1058 6.3173 33 1 5.5979 -1.2880 5.8377 34 1 6.4645 0.0389 5.0276 35 1 5.7240 0.3038 6.6243 36 1 4.2338 1.3046 2.5963 37 1 5.7803 0.4269 2.6765 38 1 4.4657 -0.1788 1.6404 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592755708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:44 Heat of formation + Delta-G solvation = -61.427249 kcal Electronic energy + Delta-G solvation = -18055.915036 eV Core-core repulsion = 15318.030093 eV Total energy + Delta-G solvation = -2737.884944 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39440 -39.10929 -36.64145 -34.33159 -33.29766 -32.37583 -30.70890 -27.51133 -27.26583 -25.82672 -23.84236 -22.05071 -21.74917 -20.54456 -18.61613 -17.67293 -17.16650 -16.94294 -16.31843 -15.80363 -15.67688 -15.31509 -14.74008 -14.38229 -14.06016 -13.76113 -13.50178 -13.34023 -13.24358 -12.88146 -12.86478 -12.70942 -12.60489 -12.28446 -12.20164 -12.13360 -12.08054 -11.85223 -11.64822 -11.08795 -10.64701 -10.49745 -9.68521 -9.35046 -8.16385 -6.33896 1.44905 1.45868 1.56335 1.86357 2.36378 2.65351 3.02289 3.13952 3.60009 3.61607 3.97136 4.21702 4.32734 4.34722 4.49514 4.53627 4.54490 4.73501 4.76521 4.80310 4.83269 4.92778 4.99960 5.03878 5.05921 5.11434 5.28056 5.33930 5.46182 5.64048 5.71473 5.91882 5.96202 6.11757 6.16755 6.74558 7.03177 7.34269 7.62923 8.89960 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039713 B = 0.005853 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.898097 B = 4782.602915 C = 5183.934844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H -0.006 1.006 4 C -0.544 4.544 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.707 5.707 13 C 0.516 3.484 14 O -0.596 6.596 15 C -0.116 4.116 16 H 0.121 0.879 17 C -0.113 4.113 18 C 0.045 3.955 19 N -0.542 5.542 20 C 0.017 3.983 21 C 0.088 3.912 22 H 0.085 0.915 23 C -0.143 4.143 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.010 0.990 27 H 0.265 0.735 28 H 0.403 0.597 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.067 0.933 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 -8.214 14.791 18.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.169 3.831 3 H 0.012 0.988 4 C -0.582 4.582 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.355 5.355 13 C 0.303 3.697 14 O -0.478 6.478 15 C -0.138 4.138 16 H 0.139 0.861 17 C -0.151 4.151 18 C -0.083 4.083 19 N -0.267 5.267 20 C -0.131 4.131 21 C -0.021 4.021 22 H 0.102 0.898 23 C -0.201 4.201 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.430 -6.711 14.587 17.297 hybrid contribution 0.061 -0.996 -1.086 1.474 sum 6.491 -7.707 13.502 16.847 Atomic orbital electron populations 1.21893 0.98511 0.99382 0.99403 1.18278 0.90938 0.91772 0.82145 0.98777 1.21536 1.32442 1.13439 0.90773 0.90865 1.25812 0.94922 0.95558 1.02371 1.70062 1.37155 1.23976 1.24537 0.85342 0.78995 0.78009 0.77958 1.19602 1.21353 1.18780 1.46341 1.65342 1.14063 1.09766 1.20848 0.76504 0.86990 0.85332 1.90622 1.52968 1.18407 1.85763 1.22357 0.96675 1.01699 0.93059 0.86074 1.22493 0.98393 1.01616 0.92582 1.23235 0.88576 1.01120 0.95323 1.64638 1.03628 1.55060 1.03352 1.22557 0.91378 0.99186 0.99937 1.22179 0.92548 0.96408 0.90967 0.89759 1.21855 1.01306 0.99938 0.97004 0.91654 0.94047 0.97098 0.92620 0.76210 0.88597 0.92300 0.89206 0.91146 0.93916 0.91530 0.90203 0.94630 0.91389 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 2 C 0.27 14.33 2.56 44.24 0.11 14.44 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 4 C -0.54 -28.90 8.73 25.60 0.22 -28.68 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -53.38 11.32 21.45 0.24 -53.14 16 8 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 12 N -0.71 -29.48 4.66 -446.11 -2.08 -31.56 16 13 C 0.52 20.81 4.70 87.65 0.41 21.22 16 14 O -0.60 -30.09 14.59 -3.05 -0.04 -30.13 16 15 C -0.12 -3.27 3.37 -10.66 -0.04 -3.31 16 16 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 17 C -0.11 -2.92 6.55 31.80 0.21 -2.71 16 18 C 0.04 0.92 6.56 86.65 0.57 1.49 16 19 N -0.54 -13.28 5.18 -884.07 -4.58 -17.86 16 20 C 0.02 0.31 9.41 127.69 1.20 1.51 16 21 C 0.09 2.31 3.08 45.06 0.14 2.45 16 22 H 0.08 1.77 7.70 -2.39 -0.02 1.75 16 23 C -0.14 -4.71 8.37 71.98 0.60 -4.10 16 24 H 0.06 3.70 6.07 -2.39 -0.01 3.68 16 25 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.40 14.05 8.54 -92.70 -0.79 13.26 16 29 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.98 6.93 -2.38 -0.02 1.96 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.09 8.00 -2.39 -0.02 1.07 16 33 H 0.04 0.61 8.00 -2.39 -0.02 0.59 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.03 1.44 7.00 -2.39 -0.02 1.42 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.84 7.11 -2.38 -0.02 1.82 16 Total: -1.00 -68.70 302.62 0.35 -68.35 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.24 Total: 22.90 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 4.55 Total: -2.75 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -6.42 Total: -102.56 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.04 Total: -30.13 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -68.70 0.35 -68.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.923 kcal (2) G-P(sol) polarization free energy of solvation -68.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds