Wall clock time and date at job start Sun Mar 29 2020 22:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 N 1.46499 * 109.47014 * 185.04673 * 3 2 1 5 5 C 1.34776 * 119.99691 * 83.45126 * 4 3 2 6 6 O 1.21692 * 119.99648 * 175.14473 * 5 4 3 7 7 C 1.46370 * 120.00278 * 355.14801 * 5 4 3 8 8 H 1.07994 * 120.00269 * 3.89377 * 7 5 4 9 9 C 1.40051 * 120.00219 * 183.89557 * 7 5 4 10 10 N 1.30674 * 120.00398 * 156.87165 * 9 7 5 11 11 Si 1.86802 * 119.99764 * 336.86881 * 9 7 5 12 12 H 1.48509 * 109.47025 * 90.00189 * 11 9 7 13 13 H 1.48495 * 109.47261 * 330.00455 * 11 9 7 14 14 H 1.48495 * 109.47435 * 209.99826 * 11 9 7 15 15 C 1.46498 * 120.00077 * 263.45306 * 4 3 2 16 16 H 1.08996 * 110.27210 * 188.26861 * 15 4 3 17 17 C 1.54593 * 110.30729 * 310.35155 * 15 4 3 18 18 C 1.55198 * 102.80233 * 96.98242 * 17 15 4 19 19 N 1.48531 * 103.23676 * 37.42950 * 18 17 15 20 20 C 1.46901 * 111.00368 * 200.25775 * 19 18 17 21 21 C 1.47903 * 105.82259 * 320.77620 * 19 18 17 22 22 H 1.09001 * 109.46824 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47351 * 300.00074 * 1 2 3 24 24 H 1.08997 * 109.46996 * 59.99882 * 1 2 3 25 25 H 1.09000 * 109.46857 * 239.99791 * 2 1 3 26 26 H 1.08997 * 109.46996 * 120.00118 * 2 1 3 27 27 H 1.09001 * 109.47066 * 65.04682 * 3 2 1 28 28 H 1.09004 * 109.46685 * 305.04696 * 3 2 1 29 29 H 0.97000 * 119.99587 * 5.03174 * 10 9 7 30 30 H 1.08999 * 110.72909 * 215.31661 * 17 15 4 31 31 H 1.08998 * 110.72871 * 338.60524 * 17 15 4 32 32 H 1.09007 * 110.68051 * 278.98969 * 18 17 15 33 33 H 1.08994 * 110.78872 * 155.93369 * 18 17 15 34 34 H 1.08998 * 109.46942 * 177.40436 * 20 19 18 35 35 H 1.08999 * 109.47049 * 297.40040 * 20 19 18 36 36 H 1.08999 * 109.46722 * 57.39782 * 20 19 18 37 37 H 1.09004 * 109.91412 * 265.97285 * 21 19 18 38 38 H 1.09002 * 109.91668 * 144.68123 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4443 -0.1215 5 6 4.0751 1.3460 -1.3364 6 8 5.2837 1.4362 -1.4465 7 6 3.2462 1.1309 -2.5234 8 1 2.1700 1.1138 -2.4346 9 6 3.8485 0.9473 -3.7744 10 7 3.2033 0.3252 -4.7253 11 14 5.5743 1.5919 -4.0836 12 1 6.5650 0.5437 -3.7298 13 1 5.8095 2.7972 -3.2486 14 1 5.7205 1.9471 -5.5180 15 6 4.3347 1.5528 1.0775 16 1 5.3801 1.6854 0.7992 17 6 3.8599 2.7323 1.9568 18 6 2.9542 2.0355 3.0070 19 7 3.6605 0.7555 3.2695 20 6 2.7499 -0.2381 3.8540 21 6 4.1707 0.3002 1.9581 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7524 1.9296 0.9317 28 1 1.6047 1.9817 -0.8414 29 1 2.2816 0.0551 -4.5896 30 1 4.7072 3.2191 2.4397 31 1 3.2877 3.4478 1.3663 32 1 1.9615 1.8499 2.5967 33 1 2.8876 2.6318 3.9169 34 1 3.2808 -1.1798 3.9934 35 1 2.3895 0.1219 4.8176 36 1 1.9038 -0.3935 3.1846 37 1 3.4575 -0.3851 1.4998 38 1 5.1344 -0.1930 2.0855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592828703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:48 Heat of formation + Delta-G solvation = -44.140107 kcal Electronic energy + Delta-G solvation = -18613.142248 eV Core-core repulsion = 15876.006931 eV Total energy + Delta-G solvation = -2737.135317 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.62365 -37.28104 -34.89919 -33.11095 -32.49532 -30.53560 -28.58462 -26.24087 -25.72631 -24.67332 -21.40170 -21.05783 -20.63322 -18.81986 -17.46616 -16.47079 -15.81345 -15.04186 -14.39069 -14.29526 -14.03547 -13.62464 -13.51996 -13.13251 -12.80289 -12.66144 -12.33310 -12.09140 -11.71914 -11.51741 -11.43095 -11.36558 -11.14115 -10.98166 -10.78330 -10.54551 -10.35053 -10.11489 -9.99743 -9.33250 -8.78631 -8.35697 -7.87499 -7.55129 -7.02455 -4.88900 3.55911 3.63441 3.95195 4.08669 4.29195 4.36574 4.57735 4.86164 4.96950 5.26500 5.31572 5.36466 5.42317 5.46993 5.52552 5.58970 5.65007 5.78079 5.80481 5.84572 5.87091 6.04910 6.16411 6.16641 6.21470 6.30042 6.44950 6.51136 6.60809 6.78768 6.91599 7.11911 7.35963 7.76271 7.85330 8.16445 8.83101 9.01353 10.11107 10.28119 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027836 B = 0.008639 C = 0.007243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.637440 B = 3240.523993 C = 3864.964644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C 0.128 3.872 4 N -0.628 5.628 5 C 0.553 3.447 6 O -0.621 6.621 7 C -0.602 4.602 8 H 0.076 0.924 9 C 0.067 3.933 10 N -0.823 5.823 11 Si 1.119 2.881 12 H -0.287 1.287 13 H -0.280 1.280 14 H -0.320 1.320 15 C 0.138 3.862 16 H 0.103 0.897 17 C -0.133 4.133 18 C 0.031 3.969 19 N -0.521 5.521 20 C 0.016 3.984 21 C 0.017 3.983 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.278 0.722 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.060 0.940 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 0.980 13.067 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.004 3.996 4 N -0.360 5.360 5 C 0.364 3.636 6 O -0.514 6.514 7 C -0.638 4.638 8 H 0.094 0.906 9 C -0.153 4.153 10 N -0.449 5.449 11 Si 0.950 3.050 12 H -0.214 1.214 13 H -0.206 1.206 14 H -0.251 1.251 15 C 0.032 3.968 16 H 0.121 0.879 17 C -0.172 4.172 18 C -0.097 4.097 19 N -0.245 5.245 20 C -0.132 4.132 21 C -0.112 4.112 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.760 1.104 12.283 12.638 hybrid contribution -2.340 -0.452 0.743 2.496 sum -5.100 0.652 13.027 14.004 Atomic orbital electron populations 1.21686 0.96334 1.01092 1.01230 1.22126 0.94944 0.98857 1.02556 1.21293 0.81687 0.95702 1.00943 1.47681 1.04626 1.78218 1.05524 1.18364 0.87262 0.75516 0.82443 1.90195 1.16369 1.60717 1.84134 1.22033 0.95124 1.54178 0.92421 0.90608 1.27056 1.07388 0.89426 0.91408 1.70665 1.12411 1.24961 1.36900 0.82636 0.72498 0.78403 0.71466 1.21423 1.20607 1.25070 1.21504 0.97772 0.92161 0.85346 0.87862 1.22906 0.99693 0.97956 0.96639 1.23417 0.96060 0.91519 0.98674 1.64766 1.32921 1.03534 1.23325 1.22491 0.95160 0.96214 0.99381 1.23546 1.00898 0.98378 0.88372 0.93177 0.93559 0.92606 0.90345 0.92947 0.92269 0.90975 0.91074 0.90459 0.90575 0.93430 0.90584 0.91614 0.91691 0.95402 0.92170 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.15 -2.48 5.57 -26.73 -0.15 -2.63 16 3 C 0.13 2.31 4.41 -4.04 -0.02 2.29 16 4 N -0.63 -13.35 2.36 -166.22 -0.39 -13.74 16 5 C 0.55 14.62 7.40 -12.99 -0.10 14.52 16 6 O -0.62 -17.92 11.85 5.20 0.06 -17.86 16 7 C -0.60 -16.55 8.30 -35.63 -0.30 -16.85 16 8 H 0.08 2.03 6.04 -52.49 -0.32 1.72 16 9 C 0.07 1.89 5.50 -17.36 -0.10 1.80 16 10 N -0.82 -23.36 13.65 55.55 0.76 -22.60 16 11 Si 1.12 29.39 26.34 -169.99 -4.48 24.92 16 12 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 13 H -0.28 -7.54 6.74 56.52 0.38 -7.16 16 14 H -0.32 -8.02 7.11 56.52 0.40 -7.61 16 15 C 0.14 2.57 3.42 -66.58 -0.23 2.34 16 16 H 0.10 2.17 6.99 -51.93 -0.36 1.81 16 17 C -0.13 -2.01 6.12 -24.73 -0.15 -2.16 16 18 C 0.03 0.41 6.19 -1.76 -0.01 0.40 16 19 N -0.52 -7.41 5.55 -238.54 -1.32 -8.73 16 20 C 0.02 0.20 9.40 60.07 0.56 0.76 16 21 C 0.02 0.28 6.27 -2.76 -0.02 0.26 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.60 7.15 -51.93 -0.37 1.23 16 26 H 0.05 0.85 5.43 -51.93 -0.28 0.57 16 27 H 0.06 0.93 4.42 -51.93 -0.23 0.70 16 28 H 0.07 1.41 6.67 -51.93 -0.35 1.06 16 29 H 0.28 7.58 8.72 -40.82 -0.36 7.23 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.17 7.62 -51.93 -0.40 0.78 16 32 H 0.05 0.63 5.83 -51.92 -0.30 0.33 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.34 7.62 -51.93 -0.40 -0.06 16 37 H 0.06 1.04 4.56 -51.93 -0.24 0.81 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 289.40 15.07 4.36 4.36 Total: -1.00 -30.23 289.40 -6.94 -37.16 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.79 Total: -2.60 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.13 Total: -0.91 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.96 Total: -45.07 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.06 Total: -17.86 kcal Atomic # 14 Polarization: 29.39 SS G_CDS: -4.48 Total: 24.92 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.23 -6.94 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592828703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.977 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds