Wall clock time and date at job start Sun Mar 29 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47169 * 2 1 4 4 C 1.50700 * 109.47599 * 120.00161 * 2 1 3 5 5 H 1.07998 * 120.00141 * 119.99760 * 4 2 1 6 6 C 1.37879 * 119.99512 * 300.00307 * 4 2 1 7 7 N 1.31521 * 119.99470 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00246 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47242 * 90.00257 * 8 6 4 10 10 H 1.48503 * 109.46917 * 209.99858 * 8 6 4 11 11 H 1.48497 * 109.47352 * 330.00005 * 8 6 4 12 12 N 1.46498 * 109.47272 * 240.00470 * 2 1 3 13 13 C 1.34771 * 120.00522 * 84.99334 * 12 2 1 14 14 O 1.21590 * 119.99710 * 355.03952 * 13 12 2 15 15 N 1.34781 * 120.00519 * 175.30707 * 13 12 2 16 16 C 1.46925 * 120.62502 * 5.05586 * 15 13 12 17 17 C 1.53193 * 108.77452 * 126.36433 * 16 15 13 18 18 C 1.53042 * 109.30953 * 54.63383 * 17 16 15 19 19 C 1.53041 * 109.54023 * 298.63360 * 18 17 16 20 20 C 1.46928 * 120.63194 * 184.77131 * 15 13 12 21 21 H 1.09000 * 109.58197 * 113.84948 * 20 15 13 22 22 C 1.52995 * 109.58490 * 353.42059 * 20 15 13 23 23 H 1.09003 * 109.46746 * 299.99701 * 1 2 3 24 24 H 1.08998 * 109.46984 * 59.99837 * 1 2 3 25 25 H 1.09005 * 109.46860 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 27 27 H 0.97002 * 120.00096 * 265.00246 * 12 2 1 28 28 H 1.09000 * 109.58293 * 246.14881 * 16 15 13 29 29 H 1.09000 * 109.58954 * 6.43284 * 16 15 13 30 30 H 1.09002 * 109.49890 * 174.58117 * 17 16 15 31 31 H 1.08989 * 109.50120 * 294.68234 * 17 16 15 32 32 H 1.09005 * 109.46326 * 58.65482 * 18 17 16 33 33 H 1.09000 * 109.45975 * 178.62466 * 18 17 16 34 34 H 1.09003 * 109.49987 * 181.32099 * 19 18 17 35 35 H 1.09006 * 109.49301 * 301.38309 * 19 18 17 36 36 H 1.08999 * 109.47065 * 64.82381 * 22 20 15 37 37 H 1.09001 * 109.46720 * 184.81581 * 22 20 15 38 38 H 1.08994 * 109.47522 * 304.82034 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.7735 1.1362 -2.4357 15 7 2.6847 -0.6272 -3.4326 16 6 3.0333 -2.0538 -3.3886 17 6 2.3582 -2.7629 -4.5668 18 6 2.7467 -2.0608 -5.8700 19 6 2.2588 -0.6107 -5.8352 20 6 2.9276 0.1215 -4.6733 21 1 4.0001 0.1881 -4.8558 22 6 2.3373 1.5275 -4.5478 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9033 -0.5281 4.4375 27 1 2.2490 -1.6317 -1.1527 28 1 4.1147 -2.1681 -3.4643 29 1 2.6849 -2.4863 -2.4507 30 1 2.6854 -3.8021 -4.6019 31 1 1.2761 -2.7258 -4.4421 32 1 3.8309 -2.0766 -5.9818 33 1 2.2872 -2.5783 -6.7121 34 1 2.5152 -0.1180 -6.7732 35 1 1.1774 -0.5939 -5.6992 36 1 2.8677 2.0760 -3.7694 37 1 2.4425 2.0517 -5.4976 38 1 1.2814 1.4563 -4.2870 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594448235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:42 Heat of formation + Delta-G solvation = -17.160613 kcal Electronic energy + Delta-G solvation = -18279.307186 eV Core-core repulsion = 15543.341787 eV Total energy + Delta-G solvation = -2735.965398 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.22255 -37.36902 -35.13571 -33.15749 -32.46864 -31.80578 -29.39479 -27.19108 -25.11962 -24.43045 -22.45805 -21.26641 -20.20141 -19.20304 -17.63651 -16.24681 -15.94250 -15.19756 -14.91929 -14.48219 -14.28216 -13.96869 -13.54241 -13.21930 -13.05865 -12.70123 -12.28711 -12.14234 -12.03174 -11.73102 -11.54008 -11.23061 -10.97791 -10.91614 -10.73708 -10.67733 -10.57082 -10.11886 -9.59157 -9.16158 -8.70845 -8.65171 -8.31731 -7.89698 -6.17269 -4.19025 3.15671 3.27115 3.38650 3.44607 3.84636 4.35631 4.51761 4.78503 4.81854 4.84740 5.07380 5.18124 5.29922 5.42195 5.48182 5.66014 5.71869 5.80811 5.85231 5.96324 6.00433 6.03174 6.23285 6.38690 6.45305 6.50326 6.65015 6.66684 6.90323 7.05381 7.18802 7.43944 7.59044 7.64364 8.33256 8.75055 8.84667 9.30114 9.46606 10.95031 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039168 B = 0.006527 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.696277 B = 4288.530105 C = 4707.421437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.254 3.746 3 H 0.046 0.954 4 C -0.532 4.532 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.721 5.721 13 C 0.700 3.300 14 O -0.593 6.593 15 N -0.634 5.634 16 C 0.112 3.888 17 C -0.135 4.135 18 C -0.118 4.118 19 C -0.132 4.132 20 C 0.163 3.837 21 H 0.062 0.938 22 C -0.132 4.132 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.267 0.733 27 H 0.388 0.612 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 -2.760 -17.292 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.150 3.850 3 H 0.064 0.936 4 C -0.571 4.571 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.532 5.532 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.186 1.186 12 N -0.375 5.375 13 C 0.402 3.598 14 O -0.472 6.472 15 N -0.373 5.373 16 C -0.012 4.012 17 C -0.173 4.173 18 C -0.155 4.155 19 C -0.171 4.171 20 C 0.059 3.941 21 H 0.080 0.920 22 C -0.189 4.189 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.223 0.777 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.744 -1.899 -17.085 17.206 hybrid contribution -0.466 0.079 0.299 0.559 sum 0.279 -1.820 -16.786 16.887 Atomic orbital electron populations 1.22457 0.99622 1.00602 0.99194 1.18935 0.89845 0.94255 0.81947 0.93621 1.21061 1.33046 1.14348 0.88604 0.90371 1.24825 0.95531 0.96738 0.95494 1.69878 1.45105 1.40174 0.98008 0.86856 0.80484 0.83640 0.77365 1.20373 1.22258 1.18603 1.45695 1.69477 1.13418 1.08911 1.16081 0.78581 0.84816 0.80328 1.90901 1.56392 1.16673 1.83283 1.47327 1.67686 1.09720 1.12603 1.21567 0.99462 0.81183 0.98982 1.21917 1.01337 0.99102 0.94965 1.21496 1.00992 0.95737 0.97302 1.21960 1.01212 0.95663 0.98219 1.20904 0.98398 0.92243 0.82599 0.92022 1.22172 1.03679 0.93758 0.99334 0.93683 0.94407 0.93108 0.92353 0.77653 0.91764 0.90037 0.90951 0.91503 0.91930 0.92022 0.91171 0.91565 0.90865 0.94905 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.96 37.16 0.33 -3.38 16 2 C 0.25 6.25 2.11 -69.08 -0.15 6.10 16 3 H 0.05 1.24 6.71 -51.93 -0.35 0.89 16 4 C -0.53 -14.66 9.31 -34.44 -0.32 -14.98 16 5 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 8 Si 0.89 22.17 24.37 -169.99 -4.14 18.02 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.72 -15.06 4.98 -59.82 -0.30 -15.36 16 13 C 0.70 14.04 8.17 -86.92 -0.71 13.33 16 14 O -0.59 -13.52 11.41 5.29 0.06 -13.45 16 15 N -0.63 -9.89 2.98 -171.17 -0.51 -10.40 16 16 C 0.11 1.38 6.39 -3.71 -0.02 1.35 16 17 C -0.13 -1.35 6.08 -26.61 -0.16 -1.52 16 18 C -0.12 -1.09 5.89 -26.69 -0.16 -1.25 16 19 C -0.13 -1.42 5.34 -26.84 -0.14 -1.57 16 20 C 0.16 2.20 3.48 -67.83 -0.24 1.97 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 22 C -0.13 -2.03 7.58 37.16 0.28 -1.74 16 23 H 0.04 1.07 3.27 -51.93 -0.17 0.90 16 24 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.39 7.26 6.03 -40.82 -0.25 7.02 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.03 5.64 -51.93 -0.29 0.73 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.74 8.14 -51.94 -0.42 0.32 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.31 6.80 -51.93 -0.35 0.96 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 1.31 6.69 -51.93 -0.35 0.97 16 LS Contribution 287.92 15.07 4.34 4.34 Total: -1.00 -31.18 287.92 -7.16 -38.34 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.01 Total: 4.07 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.38 Total: 0.43 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.03 Total: -51.75 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.06 Total: -13.45 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.18 -7.16 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594448235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.181 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds