Wall clock time and date at job start Sun Mar 29 2020 22:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47130 * 2 1 4 4 C 1.50709 * 109.46953 * 240.00276 * 2 1 3 5 5 H 1.07999 * 119.99797 * 240.00337 * 4 2 1 6 6 C 1.37875 * 119.99813 * 59.99877 * 4 2 1 7 7 N 1.31520 * 120.00041 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00300 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47400 * 270.00149 * 8 6 4 10 10 H 1.48502 * 109.47111 * 29.99930 * 8 6 4 11 11 H 1.48502 * 109.47390 * 150.00010 * 8 6 4 12 12 N 1.46494 * 109.47051 * 120.00341 * 2 1 3 13 13 C 1.34770 * 119.99970 * 274.99553 * 12 2 1 14 14 O 1.21589 * 120.00199 * 354.93321 * 13 12 2 15 15 N 1.34782 * 119.99918 * 174.92952 * 13 12 2 16 16 C 1.46924 * 120.63132 * 5.65061 * 15 13 12 17 17 C 1.53194 * 108.77264 * 233.58216 * 16 15 13 18 18 C 1.53041 * 109.31410 * 305.36823 * 17 16 15 19 19 C 1.53030 * 109.54155 * 61.36413 * 18 17 16 20 20 C 1.46929 * 120.62939 * 185.36731 * 15 13 12 21 21 H 1.08998 * 109.58774 * 246.20209 * 20 15 13 22 22 C 1.53005 * 109.58558 * 6.62702 * 20 15 13 23 23 H 1.08995 * 109.47130 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46743 * 299.99674 * 1 2 3 25 25 H 1.09003 * 109.46809 * 59.99892 * 1 2 3 26 26 H 0.96997 * 120.00377 * 180.02562 * 7 6 4 27 27 H 0.97006 * 120.00150 * 95.00621 * 12 2 1 28 28 H 1.08995 * 109.58281 * 353.36949 * 16 15 13 29 29 H 1.08995 * 109.58810 * 113.80161 * 16 15 13 30 30 H 1.09005 * 109.49442 * 65.31498 * 17 16 15 31 31 H 1.08999 * 109.49761 * 185.37726 * 17 16 15 32 32 H 1.09005 * 109.45387 * 181.38808 * 18 17 16 33 33 H 1.09001 * 109.45291 * 301.33689 * 18 17 16 34 34 H 1.09001 * 109.49685 * 58.58486 * 19 18 17 35 35 H 1.08994 * 109.50089 * 178.68569 * 19 18 17 36 36 H 1.08997 * 109.47276 * 52.54332 * 22 20 15 37 37 H 1.09007 * 109.46821 * 172.53990 * 22 20 15 38 38 H 1.08999 * 109.47141 * 292.53998 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 2.1372 -0.8595 -3.5567 8 14 0.6259 1.2799 -2.6541 9 1 -0.8021 0.8747 -2.6992 10 1 0.8492 2.1774 -1.4922 11 1 0.9771 1.9955 -3.9070 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.9468 1.1804 2.3908 15 7 2.4980 -0.6749 3.4806 16 6 2.8632 -2.0973 3.4334 17 6 2.0036 -2.8608 4.4458 18 6 2.1563 -2.2181 5.8262 19 6 1.6673 -0.7690 5.7731 20 6 2.5285 0.0197 4.7749 21 1 3.5553 0.0734 5.1367 22 6 1.9644 1.4326 4.6122 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.9031 -0.5278 -4.4377 27 1 2.2491 -1.6318 1.1525 28 1 2.6822 -2.4879 2.4321 29 1 3.9167 -2.2127 3.6881 30 1 0.9583 -2.8203 4.1393 31 1 2.3298 -3.8999 4.4896 32 1 1.5649 -2.7746 6.5533 33 1 3.2055 -2.2368 6.1213 34 1 0.6252 -0.7482 5.4541 35 1 1.7546 -0.3190 6.7620 36 1 0.9868 1.3806 4.1330 37 1 1.8642 1.8990 5.5923 38 1 2.6403 2.0249 3.9954 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594448236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:43 Heat of formation + Delta-G solvation = -38.991625 kcal Electronic energy + Delta-G solvation = -18297.897789 eV Core-core repulsion = 15560.985728 eV Total energy + Delta-G solvation = -2736.912062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.58438 -38.65132 -36.89206 -34.77616 -33.69744 -33.35468 -31.09210 -28.32000 -27.21370 -25.51597 -23.81712 -22.49748 -21.61868 -20.67330 -19.19147 -18.14160 -17.54221 -16.69492 -16.38724 -15.70237 -15.35582 -15.16942 -15.03635 -14.87285 -14.45016 -14.21870 -14.04724 -13.65419 -13.36251 -13.12932 -13.08035 -12.75442 -12.62161 -12.14446 -11.97962 -11.86282 -11.58885 -11.54013 -11.47562 -11.23617 -10.86318 -10.22434 -9.90130 -9.32241 -8.37999 -6.43445 1.27194 1.35589 1.45921 1.81825 2.26702 2.28898 2.98334 3.12968 3.86872 3.90810 3.97985 4.13583 4.33875 4.40771 4.44770 4.54188 4.56045 4.69790 4.71512 4.80602 4.88039 4.96483 5.00396 5.09033 5.13496 5.21665 5.28425 5.30093 5.42158 5.49652 5.51291 5.72075 5.84483 6.04594 6.28033 6.58179 7.17379 7.25005 7.77447 8.77403 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038393 B = 0.006602 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.121027 B = 4240.277052 C = 4651.826522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.260 3.740 3 H 0.020 0.980 4 C -0.532 4.532 5 H 0.054 0.946 6 C 0.030 3.970 7 N -0.934 5.934 8 Si 0.940 3.060 9 H -0.259 1.259 10 H -0.264 1.264 11 H -0.291 1.291 12 N -0.723 5.723 13 C 0.694 3.306 14 O -0.627 6.627 15 N -0.629 5.629 16 C 0.104 3.896 17 C -0.130 4.130 18 C -0.114 4.114 19 C -0.124 4.124 20 C 0.155 3.845 21 H 0.080 0.920 22 C -0.126 4.126 23 H 0.062 0.938 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.271 0.729 27 H 0.398 0.602 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 -3.766 19.715 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.154 3.846 3 H 0.038 0.962 4 C -0.570 4.570 5 H 0.072 0.928 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.767 3.233 9 H -0.184 1.184 10 H -0.189 1.189 11 H -0.218 1.218 12 N -0.378 5.378 13 C 0.396 3.604 14 O -0.510 6.510 15 N -0.367 5.367 16 C -0.019 4.019 17 C -0.168 4.168 18 C -0.151 4.151 19 C -0.163 4.163 20 C 0.052 3.948 21 H 0.098 0.902 22 C -0.183 4.183 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.235 0.765 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.842 -2.926 19.538 19.774 hybrid contribution -0.277 0.241 -0.934 1.004 sum -1.119 -2.686 18.604 18.830 Atomic orbital electron populations 1.22337 0.98088 1.01404 0.99180 1.18587 0.90795 0.92879 0.82331 0.96168 1.21245 1.32288 1.13510 0.89965 0.92767 1.25537 0.96847 0.99344 0.95262 1.69973 1.46743 1.41931 0.98628 0.85992 0.79785 0.80347 0.77171 1.18448 1.18893 1.21819 1.45442 1.69972 1.13867 1.08537 1.16256 0.78137 0.84912 0.81121 1.90886 1.60512 1.14285 1.85288 1.47458 1.71859 1.11474 1.05900 1.21859 1.00092 0.79281 1.00668 1.21906 0.99656 1.00124 0.95131 1.21503 1.02474 0.94602 0.96529 1.22055 0.98748 0.96437 0.99038 1.21361 0.99904 0.91978 0.81554 0.90178 1.21969 1.01221 0.95424 0.99666 0.91887 0.93929 0.94049 0.92022 0.76480 0.90854 0.89887 0.92804 0.88502 0.90112 0.90533 0.93054 0.88811 0.94323 0.91697 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.87 8.97 71.98 0.65 -6.23 16 2 C 0.26 12.90 2.19 44.25 0.10 12.99 16 3 H 0.02 1.13 6.56 -2.39 -0.02 1.12 16 4 C -0.53 -29.82 9.31 25.60 0.24 -29.58 16 5 H 0.05 3.23 7.98 -2.91 -0.02 3.20 16 6 C 0.03 1.71 5.45 84.65 0.46 2.17 16 7 N -0.93 -56.66 13.96 21.45 0.30 -56.36 16 8 Si 0.94 45.71 24.37 68.60 1.67 47.38 16 9 H -0.26 -11.78 6.87 99.48 0.68 -11.09 16 10 H -0.26 -12.90 6.53 99.48 0.65 -12.25 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 N -0.72 -30.48 4.98 -461.41 -2.30 -32.78 16 13 C 0.69 28.04 8.07 179.06 1.45 29.48 16 14 O -0.63 -29.50 11.53 -3.99 -0.05 -29.54 16 15 N -0.63 -18.88 2.97 -812.08 -2.41 -21.29 16 16 C 0.10 2.33 6.43 86.36 0.56 2.88 16 17 C -0.13 -2.22 6.08 30.67 0.19 -2.03 16 18 C -0.11 -1.64 5.88 30.62 0.18 -1.46 16 19 C -0.12 -2.29 5.40 30.81 0.17 -2.12 16 20 C 0.15 3.88 3.51 45.12 0.16 4.04 16 21 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 22 C -0.13 -3.77 7.62 71.98 0.55 -3.22 16 23 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.04 1.90 3.27 -2.39 -0.01 1.89 16 26 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.40 14.99 6.00 -92.70 -0.56 14.44 16 28 H 0.07 1.77 5.56 -2.39 -0.01 1.75 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.37 6.82 -2.39 -0.02 1.36 16 37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.05 1.68 6.67 -2.39 -0.02 1.66 16 Total: -1.00 -68.73 287.96 2.31 -66.42 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.41 Total: 19.24 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 4.68 Total: 6.94 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.41 Total: -110.43 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.05 Total: -29.54 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.67 Total: 47.38 kcal Total: -68.73 2.31 -66.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594448236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.429 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds