Wall clock time and date at job start Sun Mar 29 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.38357 * 2 1 4 4 C 1.50251 * 109.30270 * 240.25010 * 2 1 3 5 5 O 1.21282 * 118.62154 * 42.69943 * 4 2 1 6 6 N 1.33487 * 122.68877 * 222.72558 * 4 2 1 7 7 C 1.46501 * 118.36377 * 181.65790 * 6 4 2 8 8 C 1.46006 * 123.09873 * 1.63515 * 6 4 2 9 9 H 1.09002 * 109.37350 * 221.78629 * 8 6 4 10 10 C 1.53003 * 109.37957 * 102.01672 * 8 6 4 11 11 C 1.52983 * 109.94681 * 341.89803 * 8 6 4 12 12 H 1.08998 * 109.59215 * 170.01245 * 11 8 6 13 13 C 1.53001 * 109.59542 * 290.46371 * 11 8 6 14 14 N 1.46904 * 109.38247 * 119.78959 * 2 1 3 15 15 C 1.46911 * 110.99729 * 293.71503 * 14 2 1 16 16 C 1.50699 * 109.46813 * 161.58250 * 15 14 2 17 17 H 1.08004 * 119.99958 * 4.83944 * 16 15 14 18 18 C 1.37880 * 119.99935 * 184.83576 * 16 15 14 19 19 N 1.31513 * 119.99794 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99708 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47208 * 90.00517 * 20 18 16 22 22 H 1.48503 * 109.46713 * 210.00157 * 20 18 16 23 23 H 1.48498 * 109.47576 * 330.00057 * 20 18 16 24 24 H 1.09003 * 109.47315 * 306.18270 * 1 2 3 25 25 H 1.08998 * 109.47022 * 66.18516 * 1 2 3 26 26 H 1.09003 * 109.47476 * 186.18489 * 1 2 3 27 27 H 1.09002 * 109.47467 * 269.97676 * 7 6 4 28 28 H 1.09001 * 109.47424 * 29.97644 * 7 6 4 29 29 H 1.09001 * 109.46903 * 149.97980 * 7 6 4 30 30 H 1.09002 * 109.46709 * 299.77043 * 10 8 6 31 31 H 1.08999 * 109.46906 * 59.76536 * 10 8 6 32 32 H 1.08996 * 109.47250 * 179.76773 * 10 8 6 33 33 H 1.08997 * 109.47387 * 59.99879 * 13 11 8 34 34 H 1.09000 * 109.47164 * 180.02562 * 13 11 8 35 35 H 1.09008 * 109.46960 * 299.99802 * 13 11 8 36 36 H 1.08995 * 109.47077 * 281.57977 * 15 14 2 37 37 H 1.08998 * 109.47042 * 41.58546 * 15 14 2 38 38 H 0.97001 * 119.99831 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0267 -0.7037 -1.2311 5 8 1.4803 -0.4773 -2.2900 6 7 3.0439 -1.5677 -1.2068 7 6 3.4742 -2.1720 -2.4701 8 6 3.7468 -1.9374 0.0184 9 1 4.8182 -1.9790 -0.1779 10 6 3.2628 -3.3113 0.4865 11 6 3.4709 -0.9027 1.1109 12 1 3.8473 -1.2700 2.0656 13 6 4.1624 0.4151 0.7560 14 7 2.0176 -0.6885 1.2027 15 6 1.6719 0.0637 2.4164 16 6 1.7670 -0.8453 3.6146 17 1 2.1302 -1.8557 3.4985 18 6 1.3904 -0.3868 4.8593 19 7 0.9477 0.8435 5.0005 20 14 1.5089 -1.5133 6.3447 21 1 2.8477 -1.3680 6.9706 22 1 0.4597 -1.1460 7.3293 23 1 1.3135 -2.9213 5.9151 24 1 -0.3634 0.6067 0.8295 25 1 -0.3633 0.4149 -0.9401 26 1 -0.3634 -1.0217 0.1107 27 1 2.9205 -3.0958 -2.6381 28 1 3.2812 -1.4788 -3.2888 29 1 4.5409 -2.3912 -2.4233 30 1 2.1914 -3.2714 0.6832 31 1 3.4624 -4.0505 -0.2892 32 1 3.7896 -3.5907 1.3989 33 1 3.7784 0.7822 -0.1958 34 1 3.9649 1.1506 1.5358 35 1 5.2371 0.2513 0.6753 36 1 2.3639 0.8971 2.5367 37 1 0.6547 0.4455 2.3298 38 1 0.6824 1.1659 5.8761 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602845824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:10 Heat of formation + Delta-G solvation = -25.194044 kcal Electronic energy + Delta-G solvation = -18770.160329 eV Core-core repulsion = 16033.846576 eV Total energy + Delta-G solvation = -2736.313754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58319 -37.32595 -35.66195 -32.74018 -31.81726 -30.02792 -29.02926 -27.09943 -26.06467 -23.87621 -23.07674 -21.78135 -20.51115 -17.19728 -16.93662 -16.32640 -16.02401 -15.48666 -14.64781 -14.44306 -13.86765 -13.69781 -13.50786 -13.01309 -12.64450 -12.40715 -12.33070 -11.93664 -11.83110 -11.69035 -11.46657 -11.24769 -11.16757 -10.97310 -10.82371 -10.68912 -10.40324 -10.25920 -10.04781 -9.33682 -9.11040 -8.47555 -8.46326 -7.42939 -6.06992 -4.08065 2.98646 3.28440 3.29857 3.35777 3.39224 4.35631 4.65793 4.87546 4.95348 5.28342 5.30978 5.39830 5.46984 5.60521 5.63697 5.67040 5.77979 5.88089 5.89246 6.00614 6.05731 6.11773 6.32109 6.38838 6.43004 6.54536 6.63820 6.70324 6.79903 7.11860 7.26465 7.69771 7.72186 7.98772 8.06515 8.38295 8.54324 8.98381 9.55827 11.03611 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030987 B = 0.007839 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.389159 B = 3570.833282 C = 3937.981593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.063 3.937 3 H 0.067 0.933 4 C 0.530 3.470 5 O -0.563 6.563 6 N -0.599 5.599 7 C 0.081 3.919 8 C 0.149 3.851 9 H 0.076 0.924 10 C -0.155 4.155 11 C 0.071 3.929 12 H 0.111 0.889 13 C -0.184 4.184 14 N -0.513 5.513 15 C 0.186 3.814 16 C -0.504 4.504 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.896 3.104 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.055 0.945 36 H -0.003 1.003 37 H 0.041 0.959 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 -4.476 -9.079 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.048 4.048 3 H 0.084 0.916 4 C 0.318 3.682 5 O -0.441 6.441 6 N -0.331 5.331 7 C -0.062 4.062 8 C 0.045 3.955 9 H 0.094 0.906 10 C -0.213 4.213 11 C -0.039 4.039 12 H 0.128 0.872 13 C -0.243 4.243 14 N -0.239 5.239 15 C 0.061 3.939 16 C -0.542 4.542 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.724 3.276 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.015 0.985 37 H 0.059 0.941 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.828 -4.695 -9.452 12.057 hybrid contribution 0.552 0.234 0.938 1.114 sum 6.380 -4.461 -8.514 11.537 Atomic orbital electron populations 1.21668 0.91918 1.03085 1.01928 1.21644 0.97801 0.96392 0.89003 0.91590 1.20276 0.78720 0.78445 0.90709 1.90629 1.56728 1.64979 1.31811 1.47394 1.33774 1.43601 1.08350 1.21604 0.99126 0.98494 0.86945 1.21241 0.95055 0.95670 0.83485 0.90553 1.22090 1.04014 0.94799 1.00414 1.22043 0.89916 0.93374 0.98572 0.87153 1.22444 1.00436 0.99787 1.01597 1.62952 1.10143 1.48689 1.02142 1.19915 0.96748 0.92318 0.84887 1.21092 1.42935 0.99042 0.91159 0.91841 1.24966 0.95386 0.95160 0.99010 1.69946 1.44166 1.15788 1.23849 0.86524 0.77614 0.81040 0.82392 1.20807 1.21318 1.19783 0.91096 0.92005 0.91918 0.93043 0.90789 0.91731 0.90592 0.93612 0.91570 0.93382 0.91266 0.92620 0.98539 0.94073 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.85 37.16 0.33 -2.05 16 2 C 0.06 1.20 1.87 -69.08 -0.13 1.07 16 3 H 0.07 1.27 6.74 -51.93 -0.35 0.92 16 4 C 0.53 9.78 6.27 -11.78 -0.07 9.71 16 5 O -0.56 -11.55 15.42 5.56 0.09 -11.47 16 6 N -0.60 -9.35 2.73 -174.87 -0.48 -9.82 16 7 C 0.08 1.03 10.13 59.85 0.61 1.63 16 8 C 0.15 2.16 2.57 -68.20 -0.18 1.98 16 9 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 10 C -0.15 -2.18 9.29 37.16 0.35 -1.83 16 11 C 0.07 1.21 2.19 -67.56 -0.15 1.06 16 12 H 0.11 2.02 7.28 -51.93 -0.38 1.64 16 13 C -0.18 -2.94 8.33 37.16 0.31 -2.63 16 14 N -0.51 -10.29 3.97 -221.56 -0.88 -11.17 16 15 C 0.19 4.47 4.50 -4.97 -0.02 4.45 16 16 C -0.50 -13.21 8.59 -34.44 -0.30 -13.50 16 17 H 0.06 1.64 7.67 -52.48 -0.40 1.24 16 18 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 20 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 24 H 0.07 1.35 6.51 -51.93 -0.34 1.01 16 25 H 0.06 1.08 7.60 -51.93 -0.39 0.69 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.00 7.25 -51.93 -0.38 0.62 16 29 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 30 H 0.08 1.28 7.88 -51.93 -0.41 0.87 16 31 H 0.04 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.78 5.72 -51.93 -0.30 0.48 16 34 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 35 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.00 -0.08 6.36 -51.93 -0.33 -0.41 16 37 H 0.04 1.07 6.00 -51.93 -0.31 0.76 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 294.80 15.07 4.44 4.44 Total: -1.00 -29.46 294.80 -6.47 -35.93 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.00 Total: -0.15 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 0.65 Total: 1.31 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.62 Total: -45.89 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.46 -6.47 -35.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602845824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.736 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds