Wall clock time and date at job start Sun Mar 29 2020 23:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.38357 * 2 1 4 4 C 1.50251 * 109.30270 * 240.25010 * 2 1 3 5 5 O 1.21282 * 118.62154 * 42.69943 * 4 2 1 6 6 N 1.33487 * 122.68877 * 222.72558 * 4 2 1 7 7 C 1.46501 * 118.36377 * 181.65790 * 6 4 2 8 8 C 1.46006 * 123.09873 * 1.63515 * 6 4 2 9 9 H 1.09002 * 109.37350 * 221.78629 * 8 6 4 10 10 C 1.53003 * 109.37957 * 102.01672 * 8 6 4 11 11 C 1.52983 * 109.94681 * 341.89803 * 8 6 4 12 12 H 1.08998 * 109.59215 * 170.01245 * 11 8 6 13 13 C 1.53001 * 109.59542 * 290.46371 * 11 8 6 14 14 N 1.46904 * 109.38247 * 119.78959 * 2 1 3 15 15 C 1.46911 * 110.99729 * 293.71503 * 14 2 1 16 16 C 1.50699 * 109.46813 * 161.58250 * 15 14 2 17 17 H 1.08004 * 119.99958 * 4.83944 * 16 15 14 18 18 C 1.37880 * 119.99935 * 184.83576 * 16 15 14 19 19 N 1.31513 * 119.99794 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99708 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47208 * 90.00517 * 20 18 16 22 22 H 1.48503 * 109.46713 * 210.00157 * 20 18 16 23 23 H 1.48498 * 109.47576 * 330.00057 * 20 18 16 24 24 H 1.09003 * 109.47315 * 306.18270 * 1 2 3 25 25 H 1.08998 * 109.47022 * 66.18516 * 1 2 3 26 26 H 1.09003 * 109.47476 * 186.18489 * 1 2 3 27 27 H 1.09002 * 109.47467 * 269.97676 * 7 6 4 28 28 H 1.09001 * 109.47424 * 29.97644 * 7 6 4 29 29 H 1.09001 * 109.46903 * 149.97980 * 7 6 4 30 30 H 1.09002 * 109.46709 * 299.77043 * 10 8 6 31 31 H 1.08999 * 109.46906 * 59.76536 * 10 8 6 32 32 H 1.08996 * 109.47250 * 179.76773 * 10 8 6 33 33 H 1.08997 * 109.47387 * 59.99879 * 13 11 8 34 34 H 1.09000 * 109.47164 * 180.02562 * 13 11 8 35 35 H 1.09008 * 109.46960 * 299.99802 * 13 11 8 36 36 H 1.08995 * 109.47077 * 281.57977 * 15 14 2 37 37 H 1.08998 * 109.47042 * 41.58546 * 15 14 2 38 38 H 0.97001 * 119.99831 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0267 -0.7037 -1.2311 5 8 1.4803 -0.4773 -2.2900 6 7 3.0439 -1.5677 -1.2068 7 6 3.4742 -2.1720 -2.4701 8 6 3.7468 -1.9374 0.0184 9 1 4.8182 -1.9790 -0.1779 10 6 3.2628 -3.3113 0.4865 11 6 3.4709 -0.9027 1.1109 12 1 3.8473 -1.2700 2.0656 13 6 4.1624 0.4151 0.7560 14 7 2.0176 -0.6885 1.2027 15 6 1.6719 0.0637 2.4164 16 6 1.7670 -0.8453 3.6146 17 1 2.1302 -1.8557 3.4985 18 6 1.3904 -0.3868 4.8593 19 7 0.9477 0.8435 5.0005 20 14 1.5089 -1.5133 6.3447 21 1 2.8477 -1.3680 6.9706 22 1 0.4597 -1.1460 7.3293 23 1 1.3135 -2.9213 5.9151 24 1 -0.3634 0.6067 0.8295 25 1 -0.3633 0.4149 -0.9401 26 1 -0.3634 -1.0217 0.1107 27 1 2.9205 -3.0958 -2.6381 28 1 3.2812 -1.4788 -3.2888 29 1 4.5409 -2.3912 -2.4233 30 1 2.1914 -3.2714 0.6832 31 1 3.4624 -4.0505 -0.2892 32 1 3.7896 -3.5907 1.3989 33 1 3.7784 0.7822 -0.1958 34 1 3.9649 1.1506 1.5358 35 1 5.2371 0.2513 0.6753 36 1 2.3639 0.8971 2.5367 37 1 0.6547 0.4455 2.3298 38 1 0.6824 1.1659 5.8761 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602845824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:10 Heat of formation + Delta-G solvation = -44.633665 kcal Electronic energy + Delta-G solvation = -18771.003295 eV Core-core repulsion = 16033.846576 eV Total energy + Delta-G solvation = -2737.156719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.99199 -38.83218 -37.05812 -34.74883 -33.20413 -31.47546 -30.54923 -28.42563 -27.75678 -25.20020 -24.78082 -23.17035 -22.11238 -18.69804 -18.50171 -17.88677 -17.67299 -16.88399 -16.47762 -15.79535 -15.42415 -15.08895 -14.94832 -14.38960 -14.15161 -14.00754 -13.60236 -13.36004 -13.24881 -13.00027 -12.89423 -12.82687 -12.68968 -12.56431 -12.37301 -12.25785 -12.04482 -11.93457 -11.57148 -11.27051 -10.66338 -10.52925 -9.71743 -9.08751 -8.14510 -6.22537 1.44724 1.46505 1.53841 1.57079 2.04726 2.43644 3.06788 3.20679 3.51666 3.68740 3.98436 4.09493 4.17973 4.32903 4.43681 4.49723 4.52653 4.64181 4.74857 4.78974 4.85248 4.91098 4.96674 5.00438 5.01993 5.09160 5.16602 5.31521 5.36824 5.48894 5.58685 5.70148 6.07358 6.28256 6.41136 6.50042 6.91744 7.11892 7.45921 8.96197 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030987 B = 0.007839 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.389159 B = 3570.833282 C = 3937.981593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.061 3.939 3 H 0.060 0.940 4 C 0.528 3.472 5 O -0.588 6.588 6 N -0.593 5.593 7 C 0.078 3.922 8 C 0.153 3.847 9 H 0.119 0.881 10 C -0.150 4.150 11 C 0.063 3.937 12 H 0.100 0.900 13 C -0.175 4.175 14 N -0.516 5.516 15 C 0.202 3.798 16 C -0.510 4.510 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.088 0.912 36 H -0.024 1.024 37 H 0.014 0.986 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.370 -6.414 -9.625 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.051 4.051 3 H 0.078 0.922 4 C 0.317 3.683 5 O -0.469 6.469 6 N -0.324 5.324 7 C -0.064 4.064 8 C 0.050 3.950 9 H 0.136 0.864 10 C -0.208 4.208 11 C -0.046 4.046 12 H 0.118 0.882 13 C -0.233 4.233 14 N -0.242 5.242 15 C 0.076 3.924 16 C -0.549 4.549 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.576 5.576 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.215 1.215 23 H -0.189 1.189 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.107 0.893 36 H -0.007 1.007 37 H 0.032 0.968 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.803 -6.667 -10.012 14.338 hybrid contribution -0.021 0.833 1.067 1.354 sum 7.783 -5.834 -8.945 13.214 Atomic orbital electron populations 1.21578 0.92125 1.02397 1.01807 1.21637 0.97848 0.96354 0.89233 0.92229 1.20000 0.79506 0.79162 0.89676 1.90616 1.57880 1.66168 1.32253 1.47464 1.32541 1.42439 1.09980 1.21830 1.01552 0.98131 0.84843 1.21372 0.97130 0.94566 0.81974 0.86375 1.22040 1.01843 0.95132 1.01788 1.22175 0.87912 0.94934 0.99557 0.88197 1.22342 1.02366 0.98324 1.00305 1.62846 1.12631 1.47680 1.01015 1.19535 0.94674 0.91714 0.86455 1.21400 1.42250 0.99264 0.91957 0.91544 1.25815 0.95117 0.96490 1.02044 1.70080 1.45412 1.17635 1.24498 0.85469 0.77726 0.79280 0.78655 1.19849 1.21497 1.18902 0.92383 0.91110 0.92541 0.92271 0.91846 0.87898 0.93915 0.91033 0.90661 0.93731 0.93855 0.89347 1.00651 0.96813 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 8.85 71.98 0.64 -4.02 16 2 C 0.06 2.35 1.87 44.03 0.08 2.43 16 3 H 0.06 2.36 6.74 -2.39 -0.02 2.35 16 4 C 0.53 19.03 6.27 87.72 0.55 19.58 16 5 O -0.59 -23.76 15.42 -3.03 -0.05 -23.81 16 6 N -0.59 -16.95 2.73 -826.28 -2.25 -19.20 16 7 C 0.08 1.69 10.13 127.77 1.29 2.98 16 8 C 0.15 3.91 2.57 45.08 0.12 4.03 16 9 H 0.12 2.18 7.96 -2.39 -0.02 2.16 16 10 C -0.15 -3.76 9.29 71.98 0.67 -3.09 16 11 C 0.06 2.09 2.19 44.86 0.10 2.19 16 12 H 0.10 3.54 7.28 -2.39 -0.02 3.52 16 13 C -0.17 -5.37 8.33 71.98 0.60 -4.77 16 14 N -0.52 -20.91 3.97 -854.89 -3.40 -24.31 16 15 C 0.20 10.06 4.50 85.55 0.39 10.45 16 16 C -0.51 -27.09 8.59 25.60 0.22 -26.87 16 17 H 0.07 3.42 7.67 -2.91 -0.02 3.39 16 18 C 0.00 0.17 5.46 84.66 0.46 0.63 16 19 N -0.94 -54.60 13.29 21.45 0.28 -54.32 16 20 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 24 H 0.06 2.34 6.51 -2.39 -0.02 2.32 16 25 H 0.07 2.54 7.60 -2.39 -0.02 2.53 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.54 7.25 -2.39 -0.02 1.53 16 29 H 0.10 1.46 7.92 -2.39 -0.02 1.44 16 30 H 0.04 1.36 7.88 -2.39 -0.02 1.34 16 31 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.39 5.72 -2.39 -0.01 1.38 16 34 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 35 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 36 H -0.02 -1.29 6.36 -2.39 -0.02 -1.30 16 37 H 0.01 0.76 6.00 -2.39 -0.01 0.74 16 38 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -64.44 294.80 2.76 -61.69 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.03 Total: 11.67 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 5.11 Total: 3.54 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -5.37 Total: -97.82 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.05 Total: -23.81 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -64.44 2.76 -61.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602845824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.053 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds