Wall clock time and date at job start Sun Mar 29 2020 22:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46731 * 2 1 4 4 N 1.46502 * 109.47260 * 239.99905 * 2 1 3 5 5 C 1.46502 * 119.99576 * 64.97030 * 4 2 1 6 6 C 1.50697 * 109.47335 * 90.00159 * 5 4 2 7 7 H 1.08001 * 120.00362 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00184 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00196 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00243 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47139 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47183 * 119.99656 * 10 8 6 13 13 H 1.48497 * 109.47210 * 240.00013 * 10 8 6 14 14 C 1.34775 * 119.99990 * 244.96848 * 4 2 1 15 15 O 1.21284 * 119.99894 * 184.91491 * 14 4 2 16 16 C 1.50695 * 120.00108 * 4.91120 * 14 4 2 17 17 H 1.09003 * 115.55266 * 320.65411 * 16 14 4 18 18 C 1.53000 * 117.49913 * 106.32579 * 16 14 4 19 19 C 1.52997 * 117.49827 * 174.98581 * 16 14 4 20 20 H 1.09005 * 117.49791 * 145.00118 * 19 16 14 21 21 C 1.53000 * 117.49889 * 0.02562 * 19 16 14 22 22 N 1.46907 * 109.46871 * 175.00345 * 21 19 16 23 23 H 1.08997 * 109.46966 * 54.96150 * 1 2 3 24 24 H 1.09001 * 109.46553 * 174.95579 * 1 2 3 25 25 H 1.09002 * 109.47057 * 294.95732 * 1 2 3 26 26 H 1.08996 * 109.47569 * 119.99758 * 2 1 3 27 27 H 1.08995 * 109.47194 * 60.00140 * 3 2 1 28 28 H 1.09002 * 109.46546 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46936 * 299.99706 * 3 2 1 30 30 H 1.09010 * 109.46762 * 209.99724 * 5 4 2 31 31 H 1.08999 * 109.47686 * 329.99524 * 5 4 2 32 32 H 0.96996 * 120.00428 * 179.97438 * 9 8 6 33 33 H 1.08996 * 117.50248 * 214.98142 * 18 16 14 34 34 H 1.09004 * 117.49558 * 0.02562 * 18 16 14 35 35 H 1.09001 * 109.47162 * 294.99804 * 21 19 16 36 36 H 1.08996 * 109.47359 * 55.00320 * 21 19 16 37 37 H 1.00897 * 111.00389 * 56.04481 * 22 21 19 38 38 H 1.00900 * 110.99367 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.7564 -0.1298 -2.5240 6 6 2.8803 0.7977 -2.9082 7 1 3.7069 0.9541 -2.2310 8 6 2.8534 1.4466 -4.1244 9 7 1.8471 1.2558 -4.9495 10 14 4.2462 2.5968 -4.6005 11 1 5.2498 2.6379 -3.5068 12 1 4.8907 2.1052 -5.8448 13 1 3.7056 3.9609 -4.8285 14 6 2.7086 -1.8418 -1.0750 15 8 3.1895 -2.3668 -2.0569 16 6 2.8831 -2.4767 0.2805 17 1 3.0644 -1.7855 1.1036 18 6 2.0664 -3.7350 0.5816 19 6 3.5739 -3.8406 0.3381 20 1 4.2098 -4.0467 1.1992 21 6 4.0354 -4.4553 -0.9848 22 7 4.7757 -5.6955 -0.7166 23 1 -0.3633 0.5900 -0.8414 24 1 -0.3632 -1.0237 -0.0904 25 1 -0.3633 0.4336 0.9317 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6870 -0.9378 -3.2524 31 1 0.8181 0.4245 -2.5057 32 1 1.8280 1.7125 -5.8050 33 1 1.7107 -3.8718 1.6028 34 1 1.4032 -4.1038 -0.2009 35 1 3.1668 -4.6775 -1.6047 36 1 4.6833 -3.7508 -1.5063 37 1 4.2178 -6.3403 -0.1774 38 1 5.0918 -6.1207 -1.5754 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715079025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:54 Heat of formation + Delta-G solvation = -14.832888 kcal Electronic energy + Delta-G solvation = -18068.973205 eV Core-core repulsion = 15333.108745 eV Total energy + Delta-G solvation = -2735.864460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.69183 -37.04269 -35.56429 -33.25214 -32.74491 -30.79224 -27.75911 -26.66005 -25.17666 -24.07639 -22.15212 -21.13311 -20.42493 -17.75780 -16.98160 -16.41083 -15.59090 -15.19843 -14.91517 -14.23192 -14.12367 -13.49297 -13.41016 -13.33776 -12.57131 -12.45988 -12.35532 -12.15487 -11.61421 -11.57667 -11.21171 -11.14366 -10.91963 -10.81140 -10.60286 -10.37879 -10.16498 -10.00697 -9.80993 -9.50070 -8.70862 -8.47839 -8.40482 -7.60401 -6.01419 -4.04280 3.21664 3.30892 3.38981 3.43388 3.88233 4.09189 4.47369 4.55276 4.95251 5.04131 5.23379 5.30734 5.33139 5.43439 5.56093 5.61622 5.67037 5.79014 5.95022 6.02682 6.11068 6.19396 6.20582 6.30604 6.39399 6.61149 6.64659 6.99526 7.13857 7.29987 7.47643 7.58391 7.62296 7.95895 8.28003 8.49680 8.95146 9.15796 9.60003 11.06771 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.007747 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.356988 B = 3613.564671 C = 4398.401604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.156 4.156 4 N -0.588 5.588 5 C 0.248 3.752 6 C -0.515 4.515 7 H 0.058 0.942 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.532 3.468 15 O -0.538 6.538 16 C -0.182 4.182 17 H 0.119 0.881 18 C -0.159 4.159 19 C -0.119 4.119 20 H 0.113 0.887 21 C 0.097 3.903 22 N -0.856 5.856 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.095 0.905 37 H 0.332 0.668 38 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 -6.831 12.482 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.319 5.319 5 C 0.129 3.871 6 C -0.554 4.554 7 H 0.077 0.923 8 C -0.142 4.142 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.319 3.681 15 O -0.416 6.416 16 C -0.204 4.204 17 H 0.137 0.863 18 C -0.197 4.197 19 C -0.138 4.138 20 H 0.131 0.869 21 C -0.033 4.033 22 N -0.385 5.385 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.879 -6.537 12.140 13.816 hybrid contribution -0.118 0.435 -0.800 0.918 sum -0.997 -6.101 11.340 12.915 Atomic orbital electron populations 1.22158 0.95858 1.01881 1.01945 1.21016 0.93850 0.94105 0.88158 1.22122 1.01562 0.95554 1.02104 1.48282 1.52897 1.22035 1.08735 1.19212 0.96431 0.94120 0.77375 1.21477 1.06599 1.25142 1.02158 0.92336 1.24927 0.96012 0.97117 0.96184 1.69941 1.30730 1.43380 1.09620 0.86497 0.82345 0.80353 0.78577 1.19814 1.20989 1.21061 1.19412 0.78838 0.81226 0.88629 1.90640 1.48016 1.63279 1.39658 1.22402 1.07575 0.91768 0.98619 0.86286 1.23059 0.94548 0.99563 1.02501 1.22329 0.94146 0.97126 1.00156 0.86910 1.21471 0.97237 0.90940 0.93603 1.58840 1.45659 1.08724 1.25277 0.91688 0.92897 0.92422 0.90587 0.93345 0.92578 0.90218 0.94324 0.94918 0.92903 0.88322 0.88668 0.94802 0.88675 0.85740 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.17 37.16 0.34 -2.01 16 2 C 0.13 2.20 3.14 -67.93 -0.21 1.99 16 3 C -0.16 -2.63 8.36 37.16 0.31 -2.31 16 4 N -0.59 -12.39 2.39 -167.47 -0.40 -12.79 16 5 C 0.25 6.39 4.42 -5.19 -0.02 6.37 16 6 C -0.51 -14.39 7.84 -34.44 -0.27 -14.66 16 7 H 0.06 1.65 7.54 -52.49 -0.40 1.26 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 14 C 0.53 11.08 7.41 -10.99 -0.08 11.00 16 15 O -0.54 -13.18 12.77 5.55 0.07 -13.11 16 16 C -0.18 -2.81 5.05 -91.78 -0.46 -3.28 16 17 H 0.12 1.61 6.60 -51.93 -0.34 1.26 16 18 C -0.16 -2.03 9.89 -26.69 -0.26 -2.30 16 19 C -0.12 -1.68 5.95 -90.58 -0.54 -2.22 16 20 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 21 C 0.10 1.54 5.34 -3.82 -0.02 1.52 16 22 N -0.86 -10.94 9.62 -10.37 -0.10 -11.03 16 23 H 0.06 1.07 7.05 -51.93 -0.37 0.70 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.07 5.45 -51.93 -0.28 0.79 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.00 7.99 -51.93 -0.41 0.59 16 29 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 30 H 0.04 1.14 7.50 -51.92 -0.39 0.75 16 31 H 0.03 0.86 6.79 -51.93 -0.35 0.50 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 35 H 0.03 0.58 7.42 -51.93 -0.39 0.20 16 36 H 0.10 1.84 6.78 -51.93 -0.35 1.48 16 37 H 0.33 3.54 8.99 -39.29 -0.35 3.19 16 38 H 0.34 3.93 9.08 -39.29 -0.36 3.57 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -31.60 306.15 -7.44 -39.04 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.02 Total: 6.50 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.32 Total: -4.31 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.24 Total: -49.71 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.07 Total: -13.11 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.60 -7.44 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715079025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.203 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds