Wall clock time and date at job start Sun Mar 29 2020 22:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46731 * 2 1 4 4 N 1.46502 * 109.47260 * 239.99905 * 2 1 3 5 5 C 1.46502 * 119.99576 * 64.97030 * 4 2 1 6 6 C 1.50697 * 109.47335 * 90.00159 * 5 4 2 7 7 H 1.08001 * 120.00362 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00184 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00196 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00243 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47139 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47183 * 119.99656 * 10 8 6 13 13 H 1.48497 * 109.47210 * 240.00013 * 10 8 6 14 14 C 1.34775 * 119.99990 * 244.96848 * 4 2 1 15 15 O 1.21284 * 119.99894 * 184.91491 * 14 4 2 16 16 C 1.50695 * 120.00108 * 4.91120 * 14 4 2 17 17 H 1.09003 * 115.55266 * 320.65411 * 16 14 4 18 18 C 1.53000 * 117.49913 * 106.32579 * 16 14 4 19 19 C 1.52997 * 117.49827 * 174.98581 * 16 14 4 20 20 H 1.09005 * 117.49791 * 145.00118 * 19 16 14 21 21 C 1.53000 * 117.49889 * 0.02562 * 19 16 14 22 22 N 1.46907 * 109.46871 * 175.00345 * 21 19 16 23 23 H 1.08997 * 109.46966 * 54.96150 * 1 2 3 24 24 H 1.09001 * 109.46553 * 174.95579 * 1 2 3 25 25 H 1.09002 * 109.47057 * 294.95732 * 1 2 3 26 26 H 1.08996 * 109.47569 * 119.99758 * 2 1 3 27 27 H 1.08995 * 109.47194 * 60.00140 * 3 2 1 28 28 H 1.09002 * 109.46546 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46936 * 299.99706 * 3 2 1 30 30 H 1.09010 * 109.46762 * 209.99724 * 5 4 2 31 31 H 1.08999 * 109.47686 * 329.99524 * 5 4 2 32 32 H 0.96996 * 120.00428 * 179.97438 * 9 8 6 33 33 H 1.08996 * 117.50248 * 214.98142 * 18 16 14 34 34 H 1.09004 * 117.49558 * 0.02562 * 18 16 14 35 35 H 1.09001 * 109.47162 * 294.99804 * 21 19 16 36 36 H 1.08996 * 109.47359 * 55.00320 * 21 19 16 37 37 H 1.00897 * 111.00389 * 56.04481 * 22 21 19 38 38 H 1.00900 * 110.99367 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.7564 -0.1298 -2.5240 6 6 2.8803 0.7977 -2.9082 7 1 3.7069 0.9541 -2.2310 8 6 2.8534 1.4466 -4.1244 9 7 1.8471 1.2558 -4.9495 10 14 4.2462 2.5968 -4.6005 11 1 5.2498 2.6379 -3.5068 12 1 4.8907 2.1052 -5.8448 13 1 3.7056 3.9609 -4.8285 14 6 2.7086 -1.8418 -1.0750 15 8 3.1895 -2.3668 -2.0569 16 6 2.8831 -2.4767 0.2805 17 1 3.0644 -1.7855 1.1036 18 6 2.0664 -3.7350 0.5816 19 6 3.5739 -3.8406 0.3381 20 1 4.2098 -4.0467 1.1992 21 6 4.0354 -4.4553 -0.9848 22 7 4.7757 -5.6955 -0.7166 23 1 -0.3633 0.5900 -0.8414 24 1 -0.3632 -1.0237 -0.0904 25 1 -0.3633 0.4336 0.9317 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6870 -0.9378 -3.2524 31 1 0.8181 0.4245 -2.5057 32 1 1.8280 1.7125 -5.8050 33 1 1.7107 -3.8718 1.6028 34 1 1.4032 -4.1038 -0.2009 35 1 3.1668 -4.6775 -1.6047 36 1 4.6833 -3.7508 -1.5063 37 1 4.2178 -6.3403 -0.1774 38 1 5.0918 -6.1207 -1.5754 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715079025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:53 Heat of formation + Delta-G solvation = -37.445078 kcal Electronic energy + Delta-G solvation = -18069.953743 eV Core-core repulsion = 15333.108745 eV Total energy + Delta-G solvation = -2736.844999 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19306 -38.41274 -37.11572 -34.95437 -34.31392 -32.40326 -29.71367 -27.94587 -26.53143 -25.68800 -23.81792 -22.50726 -21.67016 -19.27809 -18.63519 -18.33353 -16.97243 -16.60274 -16.48913 -15.95338 -15.65136 -14.91000 -14.83548 -14.59788 -14.20372 -13.92363 -13.75572 -13.57909 -13.35476 -13.18081 -12.82952 -12.74552 -12.55186 -12.27570 -12.22002 -12.08961 -11.69010 -11.53691 -11.31024 -10.98944 -10.63068 -10.31876 -9.63723 -9.37033 -8.20746 -6.32521 1.33260 1.35818 1.47185 1.74212 2.29549 2.43364 2.86088 3.08658 3.42495 3.68044 3.91395 4.01109 4.14165 4.22497 4.32643 4.40610 4.44975 4.72857 4.84012 4.86265 4.87550 4.96109 5.01103 5.05312 5.07964 5.13069 5.23134 5.39046 5.44193 5.57195 5.64793 5.91270 6.10702 6.20694 6.64435 6.74161 6.87750 7.31542 7.55105 8.86540 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.007747 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.356988 B = 3613.564671 C = 4398.401604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 C -0.150 4.150 4 N -0.595 5.595 5 C 0.267 3.733 6 C -0.522 4.522 7 H 0.051 0.949 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.518 3.482 15 O -0.589 6.589 16 C -0.192 4.192 17 H 0.150 0.850 18 C -0.128 4.128 19 C -0.119 4.119 20 H 0.139 0.861 21 C 0.105 3.895 22 N -0.849 5.849 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.040 0.960 29 H 0.041 0.959 30 H -0.011 1.011 31 H 0.023 0.977 32 H 0.265 0.735 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.009 0.991 36 H 0.053 0.947 37 H 0.348 0.652 38 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -6.931 15.761 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 C -0.208 4.208 4 N -0.325 5.325 5 C 0.146 3.854 6 C -0.561 4.561 7 H 0.069 0.931 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.307 3.693 15 O -0.471 6.471 16 C -0.213 4.213 17 H 0.168 0.832 18 C -0.166 4.166 19 C -0.138 4.138 20 H 0.156 0.844 21 C -0.026 4.026 22 N -0.380 5.380 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.007 0.993 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.099 0.901 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.161 0.839 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.717 -6.638 15.468 16.847 hybrid contribution -0.188 0.409 -1.830 1.884 sum -0.904 -6.229 13.638 15.020 Atomic orbital electron populations 1.22108 0.94286 1.01923 1.02832 1.21427 0.95153 0.93764 0.87345 1.22064 1.00513 0.95948 1.02307 1.48332 1.53200 1.22648 1.08333 1.18593 0.95516 0.91903 0.79386 1.21672 1.06752 1.25368 1.02274 0.93095 1.25794 0.98495 0.98795 0.96188 1.70055 1.32553 1.44500 1.10084 0.85472 0.79239 0.78741 0.78018 1.19279 1.21004 1.19457 1.20468 0.77531 0.80724 0.90543 1.90623 1.49855 1.64502 1.42102 1.22343 1.10384 0.92906 0.95704 0.83231 1.23195 0.93097 0.95860 1.04401 1.22400 0.95923 0.95809 0.99632 0.84354 1.21167 0.95555 0.91522 0.94336 1.58773 1.45175 1.08221 1.25791 0.94512 0.92623 0.88409 0.86710 0.89104 0.94105 0.93968 0.99269 0.95912 0.92628 0.83798 0.90141 0.97271 0.92895 0.83918 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.17 71.98 0.66 -3.54 16 2 C 0.13 3.93 3.14 44.99 0.14 4.07 16 3 C -0.15 -4.88 8.36 71.98 0.60 -4.28 16 4 N -0.59 -25.51 2.39 -802.13 -1.91 -27.43 16 5 C 0.27 14.59 4.42 85.63 0.38 14.97 16 6 C -0.52 -30.36 7.84 25.60 0.20 -30.16 16 7 H 0.05 2.97 7.54 -2.91 -0.02 2.95 16 8 C 0.01 0.32 5.46 84.65 0.46 0.78 16 9 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 10 Si 0.96 46.07 29.54 68.60 2.03 48.09 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 14 C 0.52 21.91 7.41 87.66 0.65 22.56 16 15 O -0.59 -30.60 12.77 -3.04 -0.04 -30.64 16 16 C -0.19 -5.47 5.05 -11.54 -0.06 -5.53 16 17 H 0.15 3.34 6.60 -2.39 -0.02 3.32 16 18 C -0.13 -2.80 9.89 30.62 0.30 -2.50 16 19 C -0.12 -3.07 5.95 -10.77 -0.06 -3.13 16 20 H 0.14 2.93 8.14 -2.38 -0.02 2.91 16 21 C 0.10 3.36 5.34 86.30 0.46 3.82 16 22 N -0.85 -20.79 9.62 -186.71 -1.80 -22.59 16 23 H 0.04 1.20 7.05 -2.39 -0.02 1.18 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.12 2.73 5.45 -2.39 -0.01 2.72 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.04 1.42 7.99 -2.39 -0.02 1.40 16 29 H 0.04 1.67 6.95 -2.39 -0.02 1.66 16 30 H -0.01 -0.69 7.50 -2.38 -0.02 -0.70 16 31 H 0.02 1.27 6.79 -2.39 -0.02 1.26 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 2.05 8.03 -2.38 -0.02 2.03 16 35 H 0.01 0.33 7.42 -2.39 -0.02 0.31 16 36 H 0.05 2.15 6.78 -2.39 -0.02 2.14 16 37 H 0.35 6.69 8.99 -89.70 -0.81 5.88 16 38 H 0.35 7.85 9.08 -89.69 -0.81 7.04 16 Total: -1.00 -74.45 306.15 1.74 -72.71 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.56 Total: 19.81 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 3.74 Total: -2.94 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -3.43 Total: -107.03 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.04 Total: -30.64 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.45 1.74 -72.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715079025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.260 kcal (2) G-P(sol) polarization free energy of solvation -74.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds