Wall clock time and date at job start Sun Mar 29 2020 23:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47075 * 2 1 4 4 C 1.50697 * 109.47256 * 239.99734 * 2 1 3 5 5 H 1.08001 * 119.99693 * 240.00002 * 4 2 1 6 6 C 1.37871 * 120.00404 * 59.99685 * 4 2 1 7 7 N 1.31515 * 119.99822 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00287 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47238 * 60.00349 * 8 6 4 10 10 H 1.48504 * 109.47111 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47047 * 299.99868 * 8 6 4 12 12 N 1.46497 * 109.46902 * 119.99493 * 2 1 3 13 13 C 1.34779 * 120.00156 * 274.99967 * 12 2 1 14 14 O 1.21282 * 120.00020 * 0.02562 * 13 12 2 15 15 C 1.50695 * 120.00232 * 180.02562 * 13 12 2 16 16 C 1.53002 * 109.47398 * 179.97438 * 15 13 12 17 17 H 1.09006 * 110.89872 * 57.41426 * 16 15 13 18 18 C 1.54906 * 110.99217 * 293.54753 * 16 15 13 19 19 N 1.47840 * 104.79510 * 204.83461 * 18 16 15 20 20 C 1.47446 * 108.56768 * 24.09731 * 19 18 16 21 21 C 1.54318 * 107.23303 * 359.00691 * 20 19 18 22 22 H 1.09003 * 110.70170 * 96.09788 * 21 20 19 23 23 C 1.53000 * 110.70507 * 219.33434 * 21 20 19 24 24 H 1.09003 * 109.47075 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47424 * 300.00162 * 1 2 3 26 26 H 1.08998 * 109.46998 * 60.00465 * 1 2 3 27 27 H 0.97006 * 120.00377 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00534 * 95.00328 * 12 2 1 29 29 H 1.09000 * 109.47222 * 60.00224 * 15 13 12 30 30 H 1.08997 * 109.47217 * 299.99995 * 15 13 12 31 31 H 1.08998 * 110.36925 * 86.00429 * 18 16 15 32 32 H 1.08996 * 110.36967 * 323.66669 * 18 16 15 33 33 H 1.00901 * 111.00049 * 261.83124 * 19 18 16 34 34 H 1.08996 * 109.88895 * 118.41939 * 20 19 18 35 35 H 1.09001 * 109.88694 * 239.60335 * 20 19 18 36 36 H 1.08992 * 109.47083 * 58.54639 * 23 21 20 37 37 H 1.09005 * 109.46748 * 178.55280 * 23 21 20 38 38 H 1.08999 * 109.47106 * 298.54481 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9435 0.8299 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 1.8282 -2.5201 -4.0080 10 1 1.8279 -0.4196 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 7 2.0182 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1586 2.4117 15 6 2.6498 -0.7282 3.5875 16 6 2.7017 0.2551 4.7586 17 1 1.7216 0.6966 4.9394 18 6 3.7681 1.3520 4.5153 19 7 4.1460 1.8176 5.8666 20 6 3.8548 0.7420 6.8322 21 6 3.2460 -0.4328 6.0382 22 1 4.0125 -1.1654 5.7855 23 6 2.1091 -1.0867 6.8261 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7094 1.1615 -3.4845 28 1 2.2490 -1.6316 1.1528 29 1 3.6491 -1.1200 3.3980 30 1 1.9776 -1.5505 3.8327 31 1 3.3436 2.1721 3.9362 32 1 4.6337 0.9326 4.0025 33 1 3.6527 2.6640 6.1085 34 1 4.7756 0.4223 7.3200 35 1 3.1416 1.0954 7.5769 36 1 1.3412 -0.3435 7.0405 37 1 1.6774 -1.8959 6.2370 38 1 2.4990 -1.4867 7.7621 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722545571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:30 Heat of formation + Delta-G solvation = -79.161361 kcal Electronic energy + Delta-G solvation = -17541.179977 eV Core-core repulsion = 14802.526024 eV Total energy + Delta-G solvation = -2738.653952 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91694 -39.40221 -36.67562 -34.31418 -33.48060 -32.37248 -30.73393 -27.48475 -27.26653 -26.05127 -23.24847 -22.05735 -21.04275 -20.78162 -18.83088 -17.50990 -17.20026 -17.04999 -16.50582 -16.13900 -15.58788 -14.85089 -14.73199 -14.41059 -14.22955 -13.86406 -13.69393 -13.28541 -13.07930 -13.00979 -12.89855 -12.77515 -12.59237 -12.28926 -12.23448 -12.10158 -11.68149 -11.62935 -11.49145 -11.11501 -10.64723 -10.49796 -9.70853 -9.40361 -8.17444 -6.35254 1.44804 1.46986 1.54772 1.89621 2.36418 2.67327 3.12830 3.32527 3.60751 3.76657 3.94118 4.11559 4.33469 4.44159 4.49897 4.58144 4.69777 4.72542 4.77997 4.83960 4.91372 4.96491 5.06601 5.10752 5.13695 5.22635 5.30580 5.44513 5.50357 5.62898 5.70265 5.88904 5.93152 6.10804 6.44422 6.73243 7.02272 7.33233 7.62467 8.88620 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045745 B = 0.004690 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.938239 B = 5968.814155 C = 6018.956168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.709 5.709 13 C 0.493 3.507 14 O -0.598 6.598 15 C -0.117 4.117 16 C -0.093 4.093 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.696 5.696 20 C 0.049 3.951 21 C -0.101 4.101 22 H 0.092 0.908 23 C -0.139 4.139 24 H 0.040 0.960 25 H 0.010 0.990 26 H 0.064 0.936 27 H 0.265 0.735 28 H 0.405 0.595 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.341 0.659 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.014 -6.713 16.473 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.358 5.358 13 C 0.281 3.719 14 O -0.480 6.480 15 C -0.157 4.157 16 C -0.114 4.114 17 H 0.082 0.918 18 C -0.074 4.074 19 N -0.324 5.324 20 C -0.080 4.080 21 C -0.121 4.121 22 H 0.110 0.890 23 C -0.196 4.196 24 H 0.059 0.941 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.240 0.760 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.436 -5.899 16.307 17.899 hybrid contribution -0.877 -0.147 -1.193 1.488 sum 3.558 -6.046 15.114 16.663 Atomic orbital electron populations 1.21884 0.98469 0.99348 0.99406 1.18292 0.91000 0.91838 0.82254 0.98671 1.21535 1.32588 1.13579 0.90878 0.90857 1.25817 0.94860 0.95576 1.02390 1.70054 1.37052 1.23965 1.24632 0.85389 0.78638 0.78724 0.77534 1.18780 1.21230 1.19589 1.46318 1.65387 1.14239 1.09872 1.21480 0.77351 0.87250 0.85793 1.90615 1.53018 1.18409 1.85984 1.21624 1.04333 0.99204 0.90505 1.22453 0.98996 0.95678 0.94260 0.91785 1.22799 0.96296 0.97474 0.90807 1.61742 1.61402 1.07038 1.02182 1.22794 1.00101 0.90630 0.94483 1.22430 0.98478 0.97525 0.93631 0.89014 1.21752 0.97036 1.00540 1.00315 0.94117 0.97043 0.91684 0.92587 0.76036 0.87026 0.86586 0.93195 0.91599 0.84380 0.90088 0.91836 0.93237 0.91871 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.11 16 2 C 0.27 14.10 2.56 44.24 0.11 14.22 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 4 C -0.55 -29.09 8.73 25.60 0.22 -28.87 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 8 Si 0.97 42.03 29.54 68.60 2.03 44.05 16 9 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 N -0.71 -29.05 5.07 -446.11 -2.26 -31.31 16 13 C 0.49 19.04 7.59 87.66 0.67 19.71 16 14 O -0.60 -28.60 14.24 -3.04 -0.04 -28.64 16 15 C -0.12 -2.96 5.22 29.85 0.16 -2.80 16 16 C -0.09 -2.36 2.06 -9.41 -0.02 -2.38 16 17 H 0.06 1.86 7.96 -2.38 -0.02 1.84 16 18 C 0.06 1.61 6.34 86.77 0.55 2.16 16 19 N -0.70 -16.83 7.39 -504.45 -3.73 -20.56 16 20 C 0.05 0.91 7.18 86.65 0.62 1.53 16 21 C -0.10 -1.83 3.01 -9.61 -0.03 -1.86 16 22 H 0.09 1.50 8.04 -2.39 -0.02 1.48 16 23 C -0.14 -2.04 9.13 71.98 0.66 -1.38 16 24 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 3.65 6.07 -2.39 -0.01 3.64 16 27 H 0.27 14.55 8.31 -92.70 -0.77 13.77 16 28 H 0.40 13.73 8.54 -92.71 -0.79 12.94 16 29 H 0.11 2.38 8.10 -2.39 -0.02 2.36 16 30 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.05 1.76 7.11 -2.39 -0.02 1.75 16 32 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 33 H 0.34 7.68 8.91 -89.69 -0.80 6.88 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.03 7.82 -2.39 -0.02 1.02 16 36 H 0.05 0.79 8.13 -2.39 -0.02 0.77 16 37 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -66.68 306.41 -0.25 -66.94 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -0.54 Total: 27.05 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 4.05 Total: -4.60 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -5.75 Total: -104.80 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.04 Total: -28.64 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -66.68 -0.25 -66.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722545571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.225 kcal (2) G-P(sol) polarization free energy of solvation -66.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds