Wall clock time and date at job start Sun Mar 29 2020 22:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.37087 * 2 1 4 4 C 1.54261 * 110.32084 * 122.18468 * 2 1 3 5 5 C 1.54373 * 105.06089 * 118.89779 * 4 2 1 6 6 H 1.09004 * 110.40940 * 265.07333 * 5 4 2 7 7 C 1.53001 * 110.41583 * 142.62643 * 5 4 2 8 8 N 1.48558 * 104.59769 * 23.84514 * 5 4 2 9 9 C 1.46906 * 111.00325 * 200.96030 * 8 5 4 10 10 C 1.50704 * 109.47172 * 185.29126 * 9 8 5 11 11 O 1.21280 * 120.00014 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99902 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00067 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.46983 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00538 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99661 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.48563 * 104.22388 * 320.52018 * 8 5 4 23 23 H 1.08993 * 109.47485 * 180.73046 * 1 2 3 24 24 H 1.09007 * 109.46902 * 300.73025 * 1 2 3 25 25 H 1.08995 * 109.47436 * 60.72417 * 1 2 3 26 26 H 1.09003 * 110.31977 * 237.78592 * 4 2 1 27 27 H 1.08988 * 110.32785 * 359.89070 * 4 2 1 28 28 H 1.08996 * 109.46922 * 303.37472 * 7 5 4 29 29 H 1.09002 * 109.46833 * 63.37483 * 7 5 4 30 30 H 1.08998 * 109.47378 * 183.36597 * 7 5 4 31 31 H 1.08999 * 109.46431 * 65.29772 * 9 8 5 32 32 H 1.08998 * 109.47102 * 305.29603 * 9 8 5 33 33 H 0.97003 * 119.99826 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.46847 * 60.00131 * 13 12 10 35 35 H 1.09000 * 109.46849 * 300.00511 * 13 12 10 36 36 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 37 37 H 1.09004 * 110.41036 * 158.25489 * 22 8 5 38 38 H 1.08998 * 110.41217 * 280.70656 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0657 -0.7705 1.2243 5 6 2.8806 -1.9422 0.6358 6 1 2.2647 -2.8393 0.5719 7 6 4.1249 -2.2070 1.4859 8 7 3.2693 -1.4829 -0.7225 9 6 3.6068 -2.6218 -1.5869 10 6 4.1189 -2.1138 -2.9101 11 8 4.1956 -0.9205 -3.1129 12 7 4.4925 -2.9855 -3.8676 13 6 4.9909 -2.4917 -5.1537 14 6 5.3370 -3.6600 -6.0403 15 1 5.1999 -4.6694 -5.6817 16 6 5.8297 -3.4402 -7.3092 17 7 5.9972 -2.2110 -7.7459 18 14 6.2594 -4.8883 -8.4081 19 1 5.0682 -5.2745 -9.2065 20 1 6.6864 -6.0368 -7.5691 21 1 7.3650 -4.5051 -9.3224 22 6 2.0661 -0.7711 -1.2253 23 1 -0.3634 -1.0275 0.0131 24 1 -0.3633 0.5252 0.8834 25 1 -0.3634 0.5025 -0.8963 26 1 2.7082 -0.1269 1.8252 27 1 1.2388 -1.1470 1.8262 28 1 4.7196 -1.2961 1.5530 29 1 3.8222 -2.5180 2.4858 30 1 4.7190 -2.9958 1.0244 31 1 2.7169 -3.2296 -1.7509 32 1 4.3765 -3.2264 -1.1072 33 1 4.4315 -3.9399 -3.7052 34 1 5.8806 -1.8837 -4.9893 35 1 4.2213 -1.8871 -5.6336 36 1 5.7737 -1.4590 -7.1754 37 1 2.3394 -0.0779 -2.0209 38 1 1.3228 -1.4848 -1.5803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740883342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:39 Heat of formation + Delta-G solvation = -51.293849 kcal Electronic energy + Delta-G solvation = -17387.885427 eV Core-core repulsion = 14650.439901 eV Total energy + Delta-G solvation = -2737.445526 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.76784 -38.22062 -34.40089 -33.50695 -32.38970 -31.71412 -28.22136 -26.82110 -25.83375 -24.33793 -22.49941 -20.62263 -19.94541 -19.66345 -17.43820 -16.18027 -15.89078 -15.44965 -15.16172 -14.61670 -14.08218 -13.76014 -13.56968 -13.37136 -13.00271 -12.62701 -12.51887 -12.30326 -12.26175 -11.89042 -11.73806 -11.52871 -11.07386 -11.00451 -10.81761 -10.74297 -10.63180 -10.51616 -10.17781 -9.15331 -8.78025 -8.67070 -8.36355 -7.96453 -6.51257 -4.24667 3.32742 3.37265 3.41011 3.56498 3.68533 4.26066 4.46001 4.48312 4.65151 4.88851 5.01161 5.23050 5.26985 5.27585 5.31576 5.35345 5.50541 5.54447 5.57057 5.62101 5.66998 5.71702 5.86972 5.93282 5.98490 6.17341 6.21888 6.31571 6.92302 6.93246 7.07108 7.23823 7.35836 7.67802 8.27999 8.49344 8.72677 9.03821 9.49396 10.88980 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044561 B = 0.004400 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.203500 B = 6361.399920 C = 6664.364736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.080 0.920 4 C -0.114 4.114 5 C 0.055 3.945 6 H 0.049 0.951 7 C -0.137 4.137 8 N -0.486 5.486 9 C 0.025 3.975 10 C 0.500 3.500 11 O -0.540 6.540 12 N -0.711 5.711 13 C 0.242 3.758 14 C -0.623 4.623 15 H 0.057 0.943 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 1.079 2.921 19 H -0.286 1.286 20 H -0.288 1.288 21 H -0.282 1.282 22 C 0.039 3.961 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.391 0.609 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.273 0.727 37 H 0.096 0.904 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.002 -1.295 17.798 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.053 4.053 6 H 0.067 0.933 7 C -0.194 4.194 8 N -0.210 5.210 9 C -0.107 4.107 10 C 0.284 3.716 11 O -0.417 6.417 12 N -0.361 5.361 13 C 0.120 3.880 14 C -0.661 4.661 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.537 5.537 18 Si 0.906 3.094 19 H -0.213 1.213 20 H -0.214 1.214 21 H -0.208 1.208 22 C -0.089 4.089 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.224 0.776 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.864 -0.484 16.127 17.949 hybrid contribution -1.312 -0.733 1.500 2.123 sum -9.175 -1.217 17.627 19.909 Atomic orbital electron populations 1.21857 0.94860 1.01595 1.01766 1.21895 0.95191 1.00141 0.94519 0.90195 1.22432 0.98937 0.96579 0.97280 1.22689 0.95948 0.96650 0.90057 0.93280 1.21723 0.97075 1.02303 0.98326 1.65142 1.33954 1.21142 1.00773 1.22194 1.01241 0.93629 0.93610 1.20323 0.78933 0.87137 0.85207 1.90634 1.54525 1.15797 1.80762 1.46264 1.64540 1.09102 1.16170 1.19136 0.93801 0.95897 0.79153 1.22096 1.49467 0.92769 1.01813 0.92481 1.25884 0.93799 1.02073 0.96605 1.70729 1.44240 0.98791 1.39962 0.83409 0.76936 0.73655 0.75390 1.21294 1.21372 1.20770 1.23272 0.90087 0.97788 0.97759 0.92878 0.92589 0.92447 0.90952 0.91413 0.91649 0.92449 0.92712 0.92373 0.88329 0.77613 0.96568 0.96689 0.91662 0.88584 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.90 37.16 0.33 -1.00 16 2 C -0.10 -1.11 3.65 -89.23 -0.33 -1.44 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.15 6.20 -25.35 -0.16 -1.31 16 5 C 0.05 0.62 2.89 -66.08 -0.19 0.43 16 6 H 0.05 0.52 8.00 -51.93 -0.42 0.11 16 7 C -0.14 -1.39 9.34 37.16 0.35 -1.04 16 8 N -0.49 -7.22 4.74 -223.56 -1.06 -8.28 16 9 C 0.03 0.38 5.24 -4.97 -0.03 0.35 16 10 C 0.50 10.25 7.63 -10.98 -0.08 10.16 16 11 O -0.54 -13.18 14.84 5.56 0.08 -13.10 16 12 N -0.71 -15.38 5.55 -61.47 -0.34 -15.72 16 13 C 0.24 6.49 4.74 -5.20 -0.02 6.46 16 14 C -0.62 -17.33 9.28 -34.44 -0.32 -17.65 16 15 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 16 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 17 N -0.90 -27.60 13.65 55.43 0.76 -26.84 16 18 Si 1.08 24.61 29.90 -169.99 -5.08 19.53 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.04 0.56 5.34 -2.18 -0.01 0.55 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 27 H 0.07 0.57 7.71 -51.94 -0.40 0.17 16 28 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 31 H 0.06 0.78 7.88 -51.93 -0.41 0.37 16 32 H 0.10 1.31 7.28 -51.93 -0.38 0.93 16 33 H 0.39 7.31 8.32 -40.82 -0.34 6.97 16 34 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 35 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 36 H 0.27 8.47 7.22 -40.82 -0.29 8.17 16 37 H 0.10 1.68 6.91 -51.93 -0.36 1.32 16 38 H 0.04 0.54 7.54 -51.93 -0.39 0.15 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -32.59 307.17 -7.91 -40.51 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.34 Total: 3.22 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -0.56 Total: -3.94 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.64 Total: -50.85 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.59 -7.91 -40.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740883342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.787 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds