Wall clock time and date at job start Sun Mar 29 2020 22:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.37087 * 2 1 4 4 C 1.54261 * 110.32084 * 122.18468 * 2 1 3 5 5 C 1.54373 * 105.06089 * 118.89779 * 4 2 1 6 6 H 1.09004 * 110.40940 * 265.07333 * 5 4 2 7 7 C 1.53001 * 110.41583 * 142.62643 * 5 4 2 8 8 N 1.48558 * 104.59769 * 23.84514 * 5 4 2 9 9 C 1.46906 * 111.00325 * 200.96030 * 8 5 4 10 10 C 1.50704 * 109.47172 * 185.29126 * 9 8 5 11 11 O 1.21280 * 120.00014 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99902 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00067 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.46983 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00538 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99661 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.48563 * 104.22388 * 320.52018 * 8 5 4 23 23 H 1.08993 * 109.47485 * 180.73046 * 1 2 3 24 24 H 1.09007 * 109.46902 * 300.73025 * 1 2 3 25 25 H 1.08995 * 109.47436 * 60.72417 * 1 2 3 26 26 H 1.09003 * 110.31977 * 237.78592 * 4 2 1 27 27 H 1.08988 * 110.32785 * 359.89070 * 4 2 1 28 28 H 1.08996 * 109.46922 * 303.37472 * 7 5 4 29 29 H 1.09002 * 109.46833 * 63.37483 * 7 5 4 30 30 H 1.08998 * 109.47378 * 183.36597 * 7 5 4 31 31 H 1.08999 * 109.46431 * 65.29772 * 9 8 5 32 32 H 1.08998 * 109.47102 * 305.29603 * 9 8 5 33 33 H 0.97003 * 119.99826 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.46847 * 60.00131 * 13 12 10 35 35 H 1.09000 * 109.46849 * 300.00511 * 13 12 10 36 36 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 37 37 H 1.09004 * 110.41036 * 158.25489 * 22 8 5 38 38 H 1.08998 * 110.41217 * 280.70656 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0657 -0.7705 1.2243 5 6 2.8806 -1.9422 0.6358 6 1 2.2647 -2.8393 0.5719 7 6 4.1249 -2.2070 1.4859 8 7 3.2693 -1.4829 -0.7225 9 6 3.6068 -2.6218 -1.5869 10 6 4.1189 -2.1138 -2.9101 11 8 4.1956 -0.9205 -3.1129 12 7 4.4925 -2.9855 -3.8676 13 6 4.9909 -2.4917 -5.1537 14 6 5.3370 -3.6600 -6.0403 15 1 5.1999 -4.6694 -5.6817 16 6 5.8297 -3.4402 -7.3092 17 7 5.9972 -2.2110 -7.7459 18 14 6.2594 -4.8883 -8.4081 19 1 5.0682 -5.2745 -9.2065 20 1 6.6864 -6.0368 -7.5691 21 1 7.3650 -4.5051 -9.3224 22 6 2.0661 -0.7711 -1.2253 23 1 -0.3634 -1.0275 0.0131 24 1 -0.3633 0.5252 0.8834 25 1 -0.3634 0.5025 -0.8963 26 1 2.7082 -0.1269 1.8252 27 1 1.2388 -1.1470 1.8262 28 1 4.7196 -1.2961 1.5530 29 1 3.8222 -2.5180 2.4858 30 1 4.7190 -2.9958 1.0244 31 1 2.7169 -3.2296 -1.7509 32 1 4.3765 -3.2264 -1.1072 33 1 4.4315 -3.9399 -3.7052 34 1 5.8806 -1.8837 -4.9893 35 1 4.2213 -1.8871 -5.6336 36 1 5.7737 -1.4590 -7.1754 37 1 2.3394 -0.0779 -2.0209 38 1 1.3228 -1.4848 -1.5803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740883342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:39 Heat of formation + Delta-G solvation = -75.437962 kcal Electronic energy + Delta-G solvation = -17388.932394 eV Core-core repulsion = 14650.439901 eV Total energy + Delta-G solvation = -2738.492494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.07627 -39.66215 -36.42674 -34.61537 -34.34691 -32.68377 -29.75147 -28.13468 -27.04482 -25.61924 -24.45014 -21.73536 -21.30163 -20.84257 -19.39922 -17.82197 -17.16257 -16.68345 -16.48524 -16.13484 -15.63697 -15.40018 -14.84865 -14.52412 -14.44876 -14.23127 -13.90749 -13.59668 -13.37274 -13.12491 -12.94572 -12.79335 -12.56769 -12.47054 -12.09238 -11.89728 -11.75366 -11.43381 -11.40745 -11.01758 -10.77838 -10.76453 -9.98182 -9.46748 -8.81738 -6.57317 1.54861 1.63905 1.67679 1.81817 2.23356 2.55726 3.04136 3.06693 3.55414 3.70431 3.90398 4.03105 4.14633 4.22365 4.27684 4.42885 4.45139 4.58728 4.74250 4.75413 4.78324 4.86370 4.90516 4.93260 5.02911 5.09630 5.19286 5.30693 5.37868 5.39661 5.43977 5.52184 5.85591 5.99166 6.07229 6.29372 6.80207 7.23293 7.41504 8.57511 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044561 B = 0.004400 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.203500 B = 6361.399920 C = 6664.364736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.068 0.932 4 C -0.109 4.109 5 C 0.055 3.945 6 H 0.066 0.934 7 C -0.135 4.135 8 N -0.513 5.513 9 C 0.039 3.961 10 C 0.495 3.505 11 O -0.585 6.585 12 N -0.707 5.707 13 C 0.255 3.745 14 C -0.630 4.630 15 H 0.077 0.923 16 C -0.033 4.033 17 N -0.930 5.930 18 Si 1.133 2.867 19 H -0.270 1.270 20 H -0.259 1.259 21 H -0.285 1.285 22 C 0.037 3.963 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.409 0.591 34 H -0.019 1.019 35 H -0.019 1.019 36 H 0.253 0.747 37 H 0.052 0.948 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 -3.927 19.737 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.053 4.053 6 H 0.084 0.916 7 C -0.192 4.192 8 N -0.238 5.238 9 C -0.092 4.092 10 C 0.282 3.718 11 O -0.465 6.465 12 N -0.358 5.358 13 C 0.132 3.868 14 C -0.667 4.667 15 H 0.095 0.905 16 C -0.232 4.232 17 N -0.566 5.566 18 Si 0.952 3.048 19 H -0.196 1.196 20 H -0.184 1.184 21 H -0.211 1.211 22 C -0.091 4.091 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.245 0.755 34 H -0.002 1.002 35 H -0.001 1.001 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.831 -3.140 18.130 20.409 hybrid contribution -1.029 0.162 0.951 1.410 sum -9.860 -2.978 19.080 21.683 Atomic orbital electron populations 1.21820 0.93054 1.02308 1.02344 1.21871 0.96641 0.99225 0.93765 0.91384 1.22448 0.99578 0.95968 0.96642 1.22829 0.96891 0.97671 0.87883 0.91608 1.21732 0.96371 1.01604 0.99503 1.65091 1.34675 1.21613 1.02419 1.22108 1.02785 0.93993 0.90292 1.21410 0.77442 0.86327 0.86635 1.90621 1.56049 1.18031 1.81836 1.46043 1.64667 1.10310 1.14751 1.18635 0.91425 0.95237 0.81548 1.22460 1.48659 0.93595 1.01998 0.90496 1.27695 0.92920 1.03730 0.98805 1.70882 1.46342 0.99428 1.39955 0.82752 0.77166 0.70878 0.73966 1.19552 1.18364 1.21061 1.23183 0.90275 0.97502 0.98097 0.92070 0.90711 0.93194 0.90734 0.88848 0.93091 0.89866 0.92847 0.89662 0.85744 0.75540 1.00155 1.00134 0.93781 0.92985 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.90 71.98 0.64 -1.64 16 2 C -0.10 -2.06 3.65 -9.90 -0.04 -2.10 16 3 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.11 -1.88 6.20 31.49 0.20 -1.68 16 5 C 0.05 1.08 2.89 45.06 0.13 1.21 16 6 H 0.07 1.12 8.00 -2.38 -0.02 1.10 16 7 C -0.13 -2.35 9.34 71.98 0.67 -1.67 16 8 N -0.51 -14.71 4.74 -861.21 -4.08 -18.80 16 9 C 0.04 1.13 5.24 85.56 0.45 1.58 16 10 C 0.49 20.57 7.63 87.66 0.67 21.24 16 11 O -0.59 -30.07 14.84 -3.03 -0.04 -30.11 16 12 N -0.71 -30.80 5.55 -466.80 -2.59 -33.39 16 13 C 0.26 14.27 4.74 85.63 0.41 14.68 16 14 C -0.63 -35.13 9.28 25.60 0.24 -34.89 16 15 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 16 C -0.03 -1.89 5.46 84.65 0.46 -1.43 16 17 N -0.93 -58.60 13.65 21.45 0.29 -58.31 16 18 Si 1.13 48.38 29.90 68.60 2.05 50.43 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 C 0.04 1.08 5.34 86.45 0.46 1.54 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.27 7.84 -2.39 -0.02 1.25 16 27 H 0.09 1.17 7.71 -2.39 -0.02 1.16 16 28 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.94 7.36 -2.39 -0.02 0.92 16 31 H 0.09 2.01 7.88 -2.39 -0.02 2.00 16 32 H 0.12 2.94 7.28 -2.39 -0.02 2.92 16 33 H 0.41 14.74 8.32 -92.71 -0.77 13.97 16 34 H -0.02 -1.21 8.01 -2.39 -0.02 -1.23 16 35 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 36 H 0.25 16.61 7.22 -92.71 -0.67 15.94 16 37 H 0.05 1.94 6.91 -2.39 -0.02 1.93 16 38 H 0.04 1.19 7.54 -2.39 -0.02 1.17 16 Total: -1.00 -74.24 307.17 0.27 -73.97 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.36 Total: 19.38 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 4.29 Total: -3.17 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -6.38 Total: -110.49 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.04 Total: -30.11 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.05 Total: 50.43 kcal Total: -74.24 0.27 -73.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740883342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.469 kcal (2) G-P(sol) polarization free energy of solvation -74.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds