Wall clock time and date at job start Sun Mar 29 2020 22:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.27673 * 2 1 4 4 C 1.54591 * 110.39685 * 122.15037 * 2 1 3 5 5 C 1.54935 * 102.92858 * 140.91578 * 4 2 1 6 6 N 1.48537 * 103.22250 * 322.59228 * 5 4 2 7 7 C 1.46900 * 110.99877 * 159.71930 * 6 5 4 8 8 C 1.50705 * 109.46923 * 52.59759 * 7 6 5 9 9 O 1.21273 * 120.00272 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99722 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00124 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47574 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 11 17 17 H 1.48494 * 109.47225 * 180.27306 * 16 14 12 18 18 H 1.48506 * 109.46866 * 300.27330 * 16 14 12 19 19 H 1.48498 * 109.47306 * 60.26614 * 16 14 12 20 20 C 1.47896 * 105.82426 * 39.20354 * 6 5 4 21 21 H 1.08996 * 109.91918 * 94.02631 * 20 6 5 22 22 C 1.53004 * 109.91623 * 215.12009 * 20 6 5 23 23 H 1.09001 * 109.46777 * 182.08160 * 1 2 3 24 24 H 1.08997 * 109.47368 * 302.08701 * 1 2 3 25 25 H 1.08999 * 109.46982 * 62.08816 * 1 2 3 26 26 H 1.09004 * 110.72458 * 259.28051 * 4 2 1 27 27 H 1.09000 * 110.71944 * 22.55447 * 4 2 1 28 28 H 1.08989 * 110.66998 * 204.15215 * 5 4 2 29 29 H 1.08999 * 110.66285 * 81.02106 * 5 4 2 30 30 H 1.08995 * 109.47298 * 292.60053 * 7 6 5 31 31 H 1.09001 * 109.46989 * 172.59836 * 7 6 5 32 32 H 0.97003 * 120.00052 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.47230 * 60.00355 * 11 10 8 34 34 H 1.08998 * 109.47557 * 300.00847 * 11 10 8 35 35 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 36 36 H 1.08999 * 109.46707 * 58.54680 * 22 20 6 37 37 H 1.09002 * 109.46642 * 178.54233 * 22 20 6 38 38 H 1.08991 * 109.47033 * 298.54475 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0687 -0.7711 1.2268 5 6 3.2882 -1.5326 0.6494 6 7 2.8333 -1.9214 -0.7101 7 6 3.9768 -2.2221 -1.5819 8 6 4.8701 -3.2319 -0.9083 9 8 4.5822 -3.6593 0.1895 10 7 5.9884 -3.6607 -1.5265 11 6 6.8570 -4.6418 -0.8715 12 6 8.0301 -4.9505 -1.7659 13 1 8.1198 -4.4640 -2.7259 14 6 8.9887 -5.8537 -1.3584 15 7 8.8798 -6.4457 -0.1891 16 14 10.4388 -6.2419 -2.4702 17 1 11.3161 -7.2409 -1.8089 18 1 9.9424 -6.7936 -3.7566 19 1 11.2103 -4.9998 -2.7293 20 6 2.0645 -0.7671 -1.2237 21 1 2.7148 -0.1202 -1.8125 22 6 0.8998 -1.2585 -2.0856 23 1 -0.3633 -1.0270 0.0373 24 1 -0.3634 0.5459 0.8706 25 1 -0.3633 0.4811 -0.9081 26 1 2.3809 -0.0802 2.0100 27 1 1.3207 -1.4691 1.6025 28 1 3.5091 -2.4159 1.2485 29 1 4.1581 -0.8784 0.5915 30 1 4.5398 -1.3082 -1.7710 31 1 3.6163 -2.6290 -2.5267 32 1 6.2184 -3.3191 -2.4047 33 1 6.2942 -5.5559 -0.6815 34 1 7.2179 -4.2345 0.0729 35 1 8.1270 -6.2439 0.3884 36 1 0.2579 -1.9093 -1.4919 37 1 0.3232 -0.4035 -2.4388 38 1 1.2885 -1.8126 -2.9399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752092186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:58 Heat of formation + Delta-G solvation = -42.874465 kcal Electronic energy + Delta-G solvation = -17471.980255 eV Core-core repulsion = 14734.899820 eV Total energy + Delta-G solvation = -2737.080434 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93216 -38.30827 -34.50937 -33.41464 -32.46143 -31.40088 -28.67742 -26.77317 -25.10834 -24.62886 -22.59533 -21.21267 -19.78022 -19.08548 -17.49036 -16.37367 -16.10435 -15.21478 -14.82295 -14.65588 -14.34666 -13.90838 -13.76816 -13.58788 -12.83724 -12.77240 -12.43670 -12.25082 -11.87837 -11.84065 -11.55661 -11.45084 -11.16518 -11.03605 -10.79750 -10.69206 -10.58298 -10.49583 -10.16583 -9.04880 -8.78518 -8.69361 -8.30848 -7.99024 -6.52615 -4.26267 3.26713 3.36854 3.38864 3.57814 3.71221 4.23477 4.44527 4.53630 4.68257 4.77631 5.20798 5.26213 5.27174 5.31974 5.34141 5.37823 5.44167 5.55069 5.62616 5.68265 5.75195 5.75925 5.90382 5.98321 6.06759 6.22222 6.29977 6.45298 6.94217 7.00267 7.11044 7.21230 7.33277 7.65132 8.25602 8.45506 8.70388 8.98570 9.47643 10.87541 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060409 B = 0.004257 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.392016 B = 6576.062280 C = 6847.170036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.121 4.121 5 C 0.033 3.967 6 N -0.495 5.495 7 C 0.028 3.972 8 C 0.499 3.501 9 O -0.543 6.543 10 N -0.709 5.709 11 C 0.241 3.759 12 C -0.624 4.624 13 H 0.057 0.943 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 1.076 2.924 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.287 1.287 20 C 0.062 3.938 21 H 0.049 0.951 22 C -0.136 4.136 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.392 0.608 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.272 0.728 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.949 13.642 -3.188 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.089 0.911 4 C -0.159 4.159 5 C -0.094 4.094 6 N -0.219 5.219 7 C -0.104 4.104 8 C 0.283 3.717 9 O -0.421 6.421 10 N -0.358 5.358 11 C 0.120 3.880 12 C -0.662 4.662 13 H 0.075 0.925 14 C -0.183 4.183 15 N -0.536 5.536 16 Si 0.903 3.097 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.047 4.047 21 H 0.067 0.933 22 C -0.193 4.193 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.225 0.775 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.063 11.918 -2.490 17.857 hybrid contribution -0.660 1.883 -0.521 2.062 sum -13.724 13.800 -3.010 19.694 Atomic orbital electron populations 1.21921 0.94544 1.02217 1.01183 1.22006 0.96404 0.98645 0.94833 0.91103 1.22635 0.98127 0.98562 0.96618 1.23489 0.95056 1.00313 0.90548 1.64598 1.19511 1.35670 1.02163 1.22236 0.92179 0.98168 0.97826 1.20351 0.81843 0.83081 0.86391 1.90577 1.72776 1.58250 1.20497 1.46263 1.23525 1.44538 1.21427 1.19150 0.88606 0.86639 0.93626 1.22066 1.09118 1.29798 1.05237 0.92507 1.25884 1.01170 0.92980 0.98306 1.70763 1.32365 1.41218 1.09254 0.83446 0.75095 0.76500 0.74655 1.20538 1.21262 1.21307 1.22495 0.95659 0.90902 0.95601 0.93344 1.21846 0.97574 1.00802 0.99099 0.91842 0.93105 0.92527 0.91443 0.90683 0.86749 0.94666 0.92433 0.88291 0.77518 0.96498 0.96642 0.91701 0.91511 0.92454 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.93 37.16 0.29 -0.93 16 2 C -0.10 -1.03 3.58 -89.27 -0.32 -1.35 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.12 -1.44 6.61 -24.87 -0.16 -1.60 16 5 C 0.03 0.50 5.30 -1.90 -0.01 0.49 16 6 N -0.49 -7.36 4.89 -224.01 -1.10 -8.46 16 7 C 0.03 0.42 5.52 -4.97 -0.03 0.39 16 8 C 0.50 10.06 7.54 -10.98 -0.08 9.98 16 9 O -0.54 -12.83 13.52 5.56 0.08 -12.75 16 10 N -0.71 -15.15 5.55 -61.47 -0.34 -15.50 16 11 C 0.24 6.42 4.74 -5.20 -0.02 6.39 16 12 C -0.62 -17.27 9.28 -34.44 -0.32 -17.59 16 13 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 14 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 15 N -0.90 -27.44 13.65 55.43 0.76 -26.68 16 16 Si 1.08 24.46 29.90 -169.99 -5.08 19.38 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 20 C 0.06 0.72 3.07 -66.64 -0.20 0.51 16 21 H 0.05 0.54 7.57 -51.93 -0.39 0.15 16 22 C -0.14 -1.38 8.37 37.16 0.31 -1.07 16 23 H 0.06 0.59 6.76 -51.93 -0.35 0.24 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.43 6.76 -51.93 -0.35 0.08 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 28 H 0.11 2.11 5.97 -51.94 -0.31 1.80 16 29 H 0.03 0.54 8.02 -51.93 -0.42 0.12 16 30 H 0.06 0.77 7.81 -51.93 -0.41 0.37 16 31 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.39 7.26 8.32 -40.82 -0.34 6.92 16 33 H 0.02 0.50 8.01 -51.92 -0.42 0.08 16 34 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 35 H 0.27 8.40 7.22 -40.82 -0.29 8.11 16 36 H 0.07 0.72 6.68 -51.93 -0.35 0.37 16 37 H 0.06 0.47 6.86 -51.93 -0.36 0.12 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -31.87 300.37 -7.92 -39.79 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.11 Total: 3.93 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.64 Total: -4.23 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.68 Total: -50.64 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.38 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.87 -7.92 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752092186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.088 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds