Wall clock time and date at job start Sun Mar 29 2020 22:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.27673 * 2 1 4 4 C 1.54591 * 110.39685 * 122.15037 * 2 1 3 5 5 C 1.54935 * 102.92858 * 140.91578 * 4 2 1 6 6 N 1.48537 * 103.22250 * 322.59228 * 5 4 2 7 7 C 1.46900 * 110.99877 * 159.71930 * 6 5 4 8 8 C 1.50705 * 109.46923 * 52.59759 * 7 6 5 9 9 O 1.21273 * 120.00272 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99722 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00124 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47574 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 11 17 17 H 1.48494 * 109.47225 * 180.27306 * 16 14 12 18 18 H 1.48506 * 109.46866 * 300.27330 * 16 14 12 19 19 H 1.48498 * 109.47306 * 60.26614 * 16 14 12 20 20 C 1.47896 * 105.82426 * 39.20354 * 6 5 4 21 21 H 1.08996 * 109.91918 * 94.02631 * 20 6 5 22 22 C 1.53004 * 109.91623 * 215.12009 * 20 6 5 23 23 H 1.09001 * 109.46777 * 182.08160 * 1 2 3 24 24 H 1.08997 * 109.47368 * 302.08701 * 1 2 3 25 25 H 1.08999 * 109.46982 * 62.08816 * 1 2 3 26 26 H 1.09004 * 110.72458 * 259.28051 * 4 2 1 27 27 H 1.09000 * 110.71944 * 22.55447 * 4 2 1 28 28 H 1.08989 * 110.66998 * 204.15215 * 5 4 2 29 29 H 1.08999 * 110.66285 * 81.02106 * 5 4 2 30 30 H 1.08995 * 109.47298 * 292.60053 * 7 6 5 31 31 H 1.09001 * 109.46989 * 172.59836 * 7 6 5 32 32 H 0.97003 * 120.00052 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.47230 * 60.00355 * 11 10 8 34 34 H 1.08998 * 109.47557 * 300.00847 * 11 10 8 35 35 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 36 36 H 1.08999 * 109.46707 * 58.54680 * 22 20 6 37 37 H 1.09002 * 109.46642 * 178.54233 * 22 20 6 38 38 H 1.08991 * 109.47033 * 298.54475 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0687 -0.7711 1.2268 5 6 3.2882 -1.5326 0.6494 6 7 2.8333 -1.9214 -0.7101 7 6 3.9768 -2.2221 -1.5819 8 6 4.8701 -3.2319 -0.9083 9 8 4.5822 -3.6593 0.1895 10 7 5.9884 -3.6607 -1.5265 11 6 6.8570 -4.6418 -0.8715 12 6 8.0301 -4.9505 -1.7659 13 1 8.1198 -4.4640 -2.7259 14 6 8.9887 -5.8537 -1.3584 15 7 8.8798 -6.4457 -0.1891 16 14 10.4388 -6.2419 -2.4702 17 1 11.3161 -7.2409 -1.8089 18 1 9.9424 -6.7936 -3.7566 19 1 11.2103 -4.9998 -2.7293 20 6 2.0645 -0.7671 -1.2237 21 1 2.7148 -0.1202 -1.8125 22 6 0.8998 -1.2585 -2.0856 23 1 -0.3633 -1.0270 0.0373 24 1 -0.3634 0.5459 0.8706 25 1 -0.3633 0.4811 -0.9081 26 1 2.3809 -0.0802 2.0100 27 1 1.3207 -1.4691 1.6025 28 1 3.5091 -2.4159 1.2485 29 1 4.1581 -0.8784 0.5915 30 1 4.5398 -1.3082 -1.7710 31 1 3.6163 -2.6290 -2.5267 32 1 6.2184 -3.3191 -2.4047 33 1 6.2942 -5.5559 -0.6815 34 1 7.2179 -4.2345 0.0729 35 1 8.1270 -6.2439 0.3884 36 1 0.2579 -1.9093 -1.4919 37 1 0.3232 -0.4035 -2.4388 38 1 1.2885 -1.8126 -2.9399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752092186.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:58 Heat of formation + Delta-G solvation = -66.452242 kcal Electronic energy + Delta-G solvation = -17473.002664 eV Core-core repulsion = 14734.899820 eV Total energy + Delta-G solvation = -2738.102844 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.23561 -39.71722 -36.47720 -34.57841 -34.42046 -32.37360 -30.03561 -28.37803 -26.36587 -25.63260 -24.58289 -22.37566 -21.46164 -20.00251 -19.38822 -17.82217 -17.49795 -16.65223 -16.34960 -16.06945 -15.58349 -15.40908 -14.92133 -14.78961 -14.50853 -14.29879 -14.18871 -13.46406 -13.25111 -13.10930 -12.81501 -12.55106 -12.44189 -12.35312 -12.22903 -11.92256 -11.61769 -11.45441 -11.38795 -10.98244 -10.77465 -10.61344 -9.99035 -9.41902 -8.81748 -6.57490 1.54959 1.62139 1.64943 1.82835 2.23053 2.55905 3.02123 3.06370 3.61331 3.66557 3.92025 3.96872 4.18508 4.25182 4.32414 4.45915 4.47658 4.62590 4.75129 4.78591 4.87203 4.88506 4.93060 4.94728 5.02164 5.15975 5.23898 5.28837 5.37272 5.46979 5.51757 5.56056 5.86717 6.04474 6.07290 6.29211 6.77549 7.22219 7.39564 8.57537 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060409 B = 0.004257 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.392016 B = 6576.062280 C = 6847.170036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.086 0.914 4 C -0.116 4.116 5 C 0.031 3.969 6 N -0.514 5.514 7 C 0.041 3.959 8 C 0.493 3.507 9 O -0.582 6.582 10 N -0.705 5.705 11 C 0.255 3.745 12 C -0.631 4.631 13 H 0.077 0.923 14 C -0.033 4.033 15 N -0.929 5.929 16 Si 1.131 2.869 17 H -0.286 1.286 18 H -0.263 1.263 19 H -0.263 1.263 20 C 0.059 3.941 21 H 0.061 0.939 22 C -0.132 4.132 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.409 0.591 33 H -0.018 1.018 34 H -0.018 1.018 35 H 0.253 0.747 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.528 15.729 -5.625 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.104 0.896 4 C -0.154 4.154 5 C -0.096 4.096 6 N -0.239 5.239 7 C -0.090 4.090 8 C 0.281 3.719 9 O -0.463 6.463 10 N -0.356 5.356 11 C 0.132 3.868 12 C -0.668 4.668 13 H 0.095 0.905 14 C -0.231 4.231 15 N -0.565 5.565 16 Si 0.949 3.051 17 H -0.212 1.212 18 H -0.188 1.188 19 H -0.188 1.188 20 C -0.049 4.049 21 H 0.079 0.921 22 C -0.190 4.190 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.142 0.858 32 H 0.245 0.755 33 H 0.000 1.000 34 H 0.000 1.000 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.688 14.052 -4.959 20.234 hybrid contribution -0.552 1.252 0.294 1.399 sum -14.239 15.304 -4.665 21.418 Atomic orbital electron populations 1.21889 0.93092 1.01988 1.02491 1.22036 0.97575 0.98801 0.93031 0.89587 1.22600 0.96461 0.98542 0.97796 1.23314 0.96523 0.98798 0.90970 1.64598 1.19451 1.37915 1.01969 1.22186 0.91649 0.97332 0.97840 1.21372 0.81526 0.83157 0.85874 1.90588 1.73549 1.59664 1.22498 1.46040 1.23554 1.43882 1.22089 1.18644 0.89017 0.86326 0.92859 1.22440 1.08981 1.29554 1.05864 0.90528 1.27682 1.04271 0.92527 0.98659 1.70911 1.32126 1.42909 1.10582 0.82786 0.71701 0.77204 0.73368 1.21180 1.18794 1.18769 1.22651 0.95840 0.89977 0.96409 0.92090 1.21844 0.97034 1.01593 0.98507 0.92820 0.92189 0.90887 0.90088 0.91294 0.90965 0.95214 0.89819 0.85806 0.75529 1.00035 1.00004 0.93760 0.92488 0.89988 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 7.93 71.98 0.57 -1.40 16 2 C -0.10 -1.72 3.58 -9.92 -0.04 -1.75 16 3 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 4 C -0.12 -2.64 6.61 31.80 0.21 -2.43 16 5 C 0.03 0.97 5.30 86.65 0.46 1.43 16 6 N -0.51 -14.75 4.89 -862.63 -4.22 -18.97 16 7 C 0.04 1.17 5.52 85.56 0.47 1.64 16 8 C 0.49 20.17 7.54 87.66 0.66 20.83 16 9 O -0.58 -28.96 13.52 -3.01 -0.04 -29.00 16 10 N -0.70 -30.39 5.55 -466.78 -2.59 -32.98 16 11 C 0.26 14.13 4.74 85.63 0.41 14.53 16 12 C -0.63 -35.03 9.28 25.60 0.24 -34.79 16 13 H 0.08 3.88 7.60 -2.91 -0.02 3.85 16 14 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 15 N -0.93 -58.29 13.65 21.45 0.29 -58.00 16 16 Si 1.13 48.13 29.90 68.60 2.05 50.19 16 17 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 C 0.06 1.20 3.07 45.06 0.14 1.34 16 21 H 0.06 1.12 7.57 -2.39 -0.02 1.10 16 22 C -0.13 -2.29 8.37 71.98 0.60 -1.69 16 23 H 0.05 0.88 6.76 -2.39 -0.02 0.87 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.82 6.76 -2.39 -0.02 0.80 16 26 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 28 H 0.07 2.84 5.97 -2.39 -0.01 2.83 16 29 H 0.03 0.92 8.02 -2.39 -0.02 0.90 16 30 H 0.08 1.99 7.81 -2.39 -0.02 1.98 16 31 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.41 14.64 8.32 -92.71 -0.77 13.87 16 33 H -0.02 -1.12 8.01 -2.38 -0.02 -1.14 16 34 H -0.02 -1.10 8.00 -2.39 -0.02 -1.12 16 35 H 0.25 16.51 7.22 -92.70 -0.67 15.84 16 36 H 0.06 1.11 6.68 -2.39 -0.02 1.09 16 37 H 0.08 1.02 6.86 -2.39 -0.02 1.01 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -72.22 300.37 0.05 -72.17 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.37 Total: 20.29 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 4.18 Total: -3.70 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -6.52 Total: -109.95 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.04 Total: -29.00 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.05 Total: 50.19 kcal Total: -72.22 0.05 -72.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752092186.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.723 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds