Wall clock time and date at job start Sun Mar 29 2020 22:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.90951 * 2 1 4 4 C 1.53999 * 110.08553 * 238.78756 * 2 1 3 5 5 H 1.09001 * 110.30291 * 0.79787 * 4 2 1 6 6 C 1.52999 * 110.30996 * 122.86252 * 4 2 1 7 7 C 1.54597 * 105.14120 * 241.78328 * 4 2 1 8 8 C 1.54940 * 102.92113 * 21.95692 * 7 4 2 9 9 N 1.47909 * 109.91562 * 121.10117 * 2 1 3 10 10 C 1.46889 * 110.99806 * 333.70379 * 9 2 1 11 11 C 1.50706 * 109.47109 * 170.00132 * 10 9 2 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47148 * 179.72251 * 14 13 11 16 16 H 1.08002 * 120.00318 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99922 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99824 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99920 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46742 * 90.00640 * 19 17 15 21 21 H 1.48496 * 109.46943 * 209.99935 * 19 17 15 22 22 H 1.48493 * 109.47567 * 330.00545 * 19 17 15 23 23 H 1.08997 * 109.47187 * 300.35237 * 1 2 3 24 24 H 1.09003 * 109.46687 * 60.35005 * 1 2 3 25 25 H 1.09000 * 109.47074 * 180.35015 * 1 2 3 26 26 H 1.08999 * 109.46487 * 60.00276 * 6 4 2 27 27 H 1.08998 * 109.47397 * 180.02562 * 6 4 2 28 28 H 1.09003 * 109.47577 * 300.00767 * 6 4 2 29 29 H 1.08998 * 110.72214 * 140.31043 * 7 4 2 30 30 H 1.08993 * 110.71934 * 263.41824 * 7 4 2 31 31 H 1.09001 * 110.66337 * 204.15182 * 8 7 4 32 32 H 1.08998 * 110.66722 * 81.01773 * 8 7 4 33 33 H 1.09004 * 109.47256 * 50.00499 * 10 9 2 34 34 H 1.08998 * 109.47820 * 290.00309 * 10 9 2 35 35 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 36 36 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 37 37 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 38 38 H 0.97005 * 119.99648 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0589 -0.7495 -1.2370 5 1 1.2287 -1.1033 -1.8484 6 6 2.9725 0.1614 -2.0594 7 6 2.8602 -1.9451 -0.6727 8 6 2.2706 -2.1168 0.7499 9 7 2.0338 -0.7183 1.1907 10 6 1.0572 -0.6701 2.2869 11 6 1.4881 -1.6078 3.3852 12 8 2.5081 -2.2530 3.2662 13 7 0.7395 -1.7300 4.4992 14 6 1.1587 -2.6411 5.5672 15 6 0.1599 -2.5872 6.6944 16 1 -0.7008 -1.9387 6.6227 17 6 0.3450 -3.3656 7.8172 18 7 1.3933 -4.1549 7.9047 19 14 -0.8927 -3.2982 9.2148 20 1 -1.9510 -4.3150 8.9882 21 1 -0.2037 -3.5787 10.5000 22 1 -1.5072 -1.9474 9.2671 23 1 -0.3633 0.5193 0.8868 24 1 -0.3633 0.5084 -0.8932 25 1 -0.3633 -1.0276 0.0063 26 1 3.8169 0.4775 -1.4470 27 1 3.3383 -0.3819 -2.9307 28 1 2.4128 1.0377 -2.3866 29 1 2.6904 -2.8401 -1.2711 30 1 3.9233 -1.7094 -0.6267 31 1 2.9871 -2.6110 1.4061 32 1 1.3337 -2.6726 0.7135 33 1 0.0781 -0.9720 1.9148 34 1 0.9998 0.3456 2.6781 35 1 -0.0746 -1.2115 4.5958 36 1 1.2120 -3.6576 5.1773 37 1 2.1396 -2.3416 5.9361 38 1 1.5236 -4.7023 8.6949 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752092187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:59 Heat of formation + Delta-G solvation = -61.486897 kcal Electronic energy + Delta-G solvation = -17504.461422 eV Core-core repulsion = 14766.573892 eV Total energy + Delta-G solvation = -2737.887530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26657 -39.61557 -36.15846 -34.48713 -34.26370 -32.08899 -30.25605 -28.86913 -27.06178 -24.92135 -24.34201 -22.14032 -21.22105 -20.52528 -18.89044 -17.72610 -17.23790 -16.68614 -16.61201 -16.21044 -15.74047 -14.91523 -14.71437 -14.36115 -14.28606 -13.99486 -13.96802 -13.83063 -13.52082 -12.98257 -12.86280 -12.72182 -12.53865 -12.31714 -12.22830 -12.13479 -11.64839 -11.51007 -11.44163 -11.34400 -10.80768 -10.50158 -9.82707 -9.29028 -8.29837 -6.46717 1.42652 1.45237 1.56578 1.76906 2.28436 2.49115 3.05016 3.13216 3.66077 3.74802 3.92260 4.05604 4.27395 4.29146 4.40250 4.47093 4.51713 4.60547 4.65560 4.78807 4.93874 5.02816 5.09885 5.10363 5.17876 5.23206 5.26078 5.28786 5.31531 5.49821 5.50936 5.70773 5.84413 5.93605 6.09695 6.64497 6.92813 7.23020 7.51800 8.82453 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057966 B = 0.004365 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.923987 B = 6413.416233 C = 6733.503972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.061 3.939 3 H 0.094 0.906 4 C -0.094 4.094 5 H 0.087 0.913 6 C -0.136 4.136 7 C -0.117 4.117 8 C 0.032 3.968 9 N -0.514 5.514 10 C 0.034 3.966 11 C 0.490 3.510 12 O -0.585 6.585 13 N -0.708 5.708 14 C 0.268 3.732 15 C -0.556 4.556 16 H 0.084 0.916 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.255 1.255 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.408 0.592 36 H -0.014 1.014 37 H -0.015 1.015 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 10.123 -18.172 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.047 4.047 3 H 0.112 0.888 4 C -0.113 4.113 5 H 0.105 0.895 6 C -0.194 4.194 7 C -0.155 4.155 8 C -0.095 4.095 9 N -0.239 5.239 10 C -0.097 4.097 11 C 0.278 3.722 12 O -0.466 6.466 13 N -0.359 5.359 14 C 0.145 3.855 15 C -0.594 4.594 16 H 0.102 0.898 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.178 1.178 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.141 0.859 35 H 0.243 0.757 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.135 9.788 -17.926 20.663 hybrid contribution -1.135 -0.718 0.919 1.627 sum -4.270 9.070 -17.007 19.742 Atomic orbital electron populations 1.22438 0.95381 1.01880 1.03776 1.22757 0.94314 0.98909 0.88721 0.88754 1.22086 0.98577 0.95176 0.95502 0.89460 1.21785 0.99000 0.99235 0.99349 1.22602 1.00054 0.98796 0.94089 1.23306 0.99529 0.89941 0.96755 1.64804 1.40670 1.12206 1.06229 1.22335 0.96339 1.00177 0.90870 1.21411 0.83520 0.83265 0.84044 1.90589 1.26984 1.48818 1.80219 1.46177 1.27160 1.44590 1.17982 1.18508 0.94624 0.87417 0.84916 1.21626 1.09465 1.26284 1.02048 0.89765 1.26088 0.97803 0.94130 1.01637 1.70146 1.29856 1.26668 1.30347 0.85141 0.77839 0.79379 0.76763 1.19563 1.20974 1.17838 0.91189 0.89929 0.93295 0.93215 0.91836 0.91330 0.90205 0.91315 0.91050 0.95250 0.88927 0.85859 0.75666 0.99626 0.99670 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 7.62 71.98 0.55 -2.32 16 2 C 0.06 1.23 3.42 45.06 0.15 1.39 16 3 H 0.09 1.80 7.68 -2.39 -0.02 1.78 16 4 C -0.09 -1.71 3.23 -9.91 -0.03 -1.75 16 5 H 0.09 1.37 7.69 -2.39 -0.02 1.35 16 6 C -0.14 -2.02 8.90 71.98 0.64 -1.38 16 7 C -0.12 -2.72 6.61 31.80 0.21 -2.51 16 8 C 0.03 1.01 5.29 86.65 0.46 1.47 16 9 N -0.51 -14.93 5.25 -862.60 -4.53 -19.46 16 10 C 0.03 0.96 4.49 85.56 0.38 1.34 16 11 C 0.49 20.23 7.54 87.66 0.66 20.89 16 12 O -0.59 -29.61 13.52 -3.03 -0.04 -29.65 16 13 N -0.71 -30.51 5.55 -466.78 -2.59 -33.10 16 14 C 0.27 15.00 5.43 85.63 0.46 15.47 16 15 C -0.56 -30.58 9.28 25.60 0.24 -30.34 16 16 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 17 C 0.00 0.16 5.46 84.66 0.46 0.63 16 18 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 19 Si 0.99 42.50 29.54 68.60 2.03 44.53 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 23 H 0.07 1.06 6.72 -2.39 -0.02 1.05 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 0.88 7.64 -2.39 -0.02 0.87 16 26 H 0.05 0.85 8.11 -2.39 -0.02 0.83 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.66 7.84 -2.39 -0.02 1.64 16 31 H 0.07 2.86 5.97 -2.39 -0.01 2.85 16 32 H 0.03 0.92 8.02 -2.39 -0.02 0.90 16 33 H 0.09 2.22 5.66 -2.39 -0.01 2.21 16 34 H 0.12 2.94 8.12 -2.39 -0.02 2.92 16 35 H 0.41 14.35 8.32 -92.70 -0.77 13.58 16 36 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 37 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -71.43 302.24 -0.40 -71.83 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.26 Total: 19.49 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 4.19 Total: 2.90 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -6.83 Total: -109.09 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.04 Total: -29.65 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.43 -0.40 -71.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752092187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.342 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds