Wall clock time and date at job start Sun Mar 29 2020 23:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 110.76854 * 2 1 4 4 C 1.55141 * 110.70781 * 236.79541 * 2 1 3 5 5 C 1.54906 * 101.65329 * 205.96224 * 4 2 1 6 6 N 1.47844 * 104.79510 * 37.07301 * 5 4 2 7 7 C 1.46910 * 110.99980 * 213.63557 * 6 5 4 8 8 C 1.50700 * 109.46812 * 290.84428 * 7 6 5 9 9 O 1.21286 * 120.00120 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00000 * 179.97438 * 8 7 6 11 11 C 1.46491 * 120.00091 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46957 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.47437 * 108.56701 * 335.90057 * 6 5 4 21 21 H 1.09003 * 109.88901 * 120.40185 * 20 6 5 22 22 C 1.53004 * 109.89272 * 241.42485 * 20 6 5 23 23 H 1.09002 * 109.47328 * 296.80188 * 1 2 3 24 24 H 1.09001 * 109.47198 * 56.80673 * 1 2 3 25 25 H 1.09005 * 109.47000 * 176.80516 * 1 2 3 26 26 H 1.08991 * 110.99161 * 324.05400 * 4 2 1 27 27 H 1.09001 * 110.98864 * 87.87271 * 4 2 1 28 28 H 1.09000 * 110.37628 * 278.23871 * 5 4 2 29 29 H 1.09002 * 110.37531 * 155.90172 * 5 4 2 30 30 H 1.08998 * 109.47017 * 170.84490 * 7 6 5 31 31 H 1.09002 * 109.46670 * 50.83901 * 7 6 5 32 32 H 0.97003 * 119.99349 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.47166 * 60.00164 * 11 10 8 34 34 H 1.08994 * 109.47507 * 299.99870 * 11 10 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.46852 * 58.54185 * 22 20 6 37 37 H 1.08996 * 109.47666 * 178.54975 * 22 20 6 38 38 H 1.09004 * 109.46814 * 298.54695 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9164 1.0191 0.0000 4 6 2.0785 -0.7947 -1.2142 5 6 3.4650 -1.2466 -0.6918 6 7 3.2489 -1.5501 0.7389 7 6 4.4406 -1.2214 1.5327 8 6 5.5503 -2.1833 1.1945 9 8 5.3664 -3.0569 0.3735 10 7 6.7471 -2.0728 1.8045 11 6 7.8256 -3.0082 1.4762 12 6 9.0485 -2.6702 2.2895 13 1 9.0245 -1.8417 2.9820 14 6 10.1961 -3.4225 2.1541 15 7 10.2252 -4.4315 1.3111 16 14 11.7094 -3.0083 3.1678 17 1 11.4196 -1.8376 4.0343 18 1 12.0717 -4.1730 4.0149 19 1 12.8398 -2.6854 2.2606 20 6 2.0756 -0.7904 1.2079 21 1 1.3132 -1.4762 1.5774 22 6 2.4908 0.1742 2.3207 23 1 -0.3634 0.4634 0.9173 24 1 -0.3633 0.5626 -0.8600 25 1 -0.3633 -1.0261 -0.0573 26 1 1.4460 -1.6540 -1.4364 27 1 2.1812 -0.1511 -2.0879 28 1 4.1930 -0.4430 -0.8036 29 1 3.7985 -2.1383 -1.2228 30 1 4.2031 -1.2991 2.5937 31 1 4.7595 -0.2043 1.3051 32 1 6.8941 -1.3739 2.4608 33 1 8.0628 -2.9313 0.4151 34 1 7.5067 -4.0251 1.7045 35 1 11.0326 -4.9606 1.2156 36 1 3.2584 0.8517 1.9465 37 1 1.6240 0.7503 2.6444 38 1 2.8860 -0.3924 3.1639 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752092188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:01 Heat of formation + Delta-G solvation = -64.211913 kcal Electronic energy + Delta-G solvation = -17432.807335 eV Core-core repulsion = 14694.801639 eV Total energy + Delta-G solvation = -2738.005696 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16309 -39.65235 -36.11469 -34.46172 -34.22813 -32.43962 -30.17553 -28.69592 -27.04221 -24.96069 -24.33170 -22.11456 -21.31492 -20.44410 -18.92026 -17.73869 -17.19705 -16.65316 -16.53659 -16.10124 -15.76332 -15.27406 -14.81053 -14.53037 -14.20240 -14.09965 -13.85883 -13.58809 -13.27040 -12.95283 -12.89853 -12.75485 -12.68003 -12.24108 -12.18506 -12.12890 -11.77547 -11.51802 -11.45268 -11.31781 -10.81630 -10.64245 -9.80714 -9.19469 -8.29490 -6.46332 1.42901 1.44360 1.57889 1.81421 2.28852 2.48921 3.05322 3.12500 3.62762 3.72560 3.88754 4.07923 4.23385 4.27936 4.32823 4.48285 4.50921 4.60846 4.64422 4.78176 4.91392 4.96248 5.10963 5.12467 5.16274 5.19920 5.23717 5.26258 5.35704 5.49723 5.53605 5.70195 5.84997 5.99311 6.14548 6.65361 6.96544 7.23530 7.55047 8.83100 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057042 B = 0.004299 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.749657 B = 6511.721571 C = 6824.581267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.120 4.120 5 C 0.045 3.955 6 N -0.533 5.533 7 C 0.043 3.957 8 C 0.490 3.510 9 O -0.588 6.588 10 N -0.710 5.710 11 C 0.268 3.732 12 C -0.555 4.555 13 H 0.085 0.915 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.987 3.013 17 H -0.252 1.252 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.068 3.932 21 H 0.084 0.916 22 C -0.169 4.169 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.408 0.592 33 H -0.016 1.016 34 H -0.016 1.016 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.250 13.984 1.746 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.123 4.123 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.082 4.082 6 N -0.257 5.257 7 C -0.088 4.088 8 C 0.277 3.723 9 O -0.468 6.468 10 N -0.362 5.362 11 C 0.145 3.855 12 C -0.593 4.593 13 H 0.103 0.897 14 C -0.198 4.198 15 N -0.571 5.571 16 Si 0.810 3.190 17 H -0.175 1.175 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.039 4.039 21 H 0.102 0.898 22 C -0.227 4.227 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.103 0.897 32 H 0.243 0.757 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.354 12.690 1.170 21.530 hybrid contribution 1.376 0.468 0.189 1.466 sum -15.977 13.158 1.359 20.742 Atomic orbital electron populations 1.21695 0.92800 1.02087 1.02654 1.22448 0.97451 0.98956 0.93404 0.89663 1.22787 0.94532 1.00135 0.98358 1.22976 0.97845 0.98775 0.88619 1.63293 1.03227 1.56499 1.02719 1.22282 0.88956 0.96071 1.01443 1.21530 0.84064 0.85896 0.80808 1.90622 1.82548 1.37783 1.35867 1.46178 1.12093 1.34490 1.43394 1.18499 0.84948 0.87678 0.94380 1.21660 0.96707 1.16387 1.24499 0.89714 1.26107 1.02857 0.94262 0.96544 1.70158 1.29923 1.19829 1.37173 0.85082 0.77240 0.78677 0.78026 1.17507 1.20462 1.20438 1.22668 0.91823 0.93916 0.95460 0.89781 1.22393 1.02803 0.99277 0.98221 0.91399 0.91653 0.92855 0.91010 0.89514 0.94300 0.92972 0.85385 0.89705 0.75693 0.99763 0.99777 0.92267 0.92035 0.90071 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.13 71.98 0.66 -1.08 16 2 C -0.10 -1.74 3.07 -9.61 -0.03 -1.77 16 3 H 0.09 1.29 7.86 -2.39 -0.02 1.27 16 4 C -0.12 -2.52 6.52 31.98 0.21 -2.31 16 5 C 0.05 1.34 5.74 86.77 0.50 1.84 16 6 N -0.53 -15.53 4.86 -865.04 -4.21 -19.73 16 7 C 0.04 1.24 4.18 85.56 0.36 1.60 16 8 C 0.49 20.58 7.63 87.66 0.67 21.25 16 9 O -0.59 -30.71 15.04 -3.05 -0.05 -30.75 16 10 N -0.71 -30.95 5.55 -466.80 -2.59 -33.54 16 11 C 0.27 15.14 5.43 85.64 0.46 15.60 16 12 C -0.55 -30.65 9.28 25.60 0.24 -30.41 16 13 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 14 C 0.00 0.09 5.46 84.66 0.46 0.56 16 15 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 16 Si 0.99 42.67 29.54 68.60 2.03 44.70 16 17 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 20 C 0.07 1.39 3.61 45.26 0.16 1.55 16 21 H 0.08 1.75 7.82 -2.39 -0.02 1.73 16 22 C -0.17 -2.59 7.85 71.98 0.56 -2.03 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.76 8.11 -2.38 -0.02 0.74 16 26 H 0.07 1.55 8.02 -2.39 -0.02 1.53 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.12 7.62 -2.39 -0.02 1.10 16 29 H 0.05 1.93 7.38 -2.39 -0.02 1.91 16 30 H 0.13 3.03 6.07 -2.39 -0.01 3.02 16 31 H 0.09 2.03 6.81 -2.39 -0.02 2.01 16 32 H 0.41 14.46 8.32 -92.71 -0.77 13.68 16 33 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 34 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.06 0.92 6.91 -2.39 -0.02 0.91 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.03 6.43 -2.39 -0.02 1.01 16 Total: -1.00 -73.51 303.59 -0.01 -73.52 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.27 Total: 17.88 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.25 Total: 4.80 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -6.51 Total: -110.14 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.05 Total: -30.75 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -73.51 -0.01 -73.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752092188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.306 kcal (2) G-P(sol) polarization free energy of solvation -73.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds