Wall clock time and date at job start Sun Mar 29 2020 22:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.50698 * 109.47395 * 240.00137 * 2 1 3 5 5 H 1.07999 * 120.00165 * 240.00313 * 4 2 1 6 6 C 1.37873 * 120.00194 * 59.99957 * 4 2 1 7 7 N 1.31512 * 119.99839 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47130 * 89.99894 * 8 6 4 10 10 H 1.48495 * 109.47075 * 209.99589 * 8 6 4 11 11 H 1.48496 * 109.47207 * 330.00095 * 8 6 4 12 12 N 1.46906 * 109.47112 * 119.99911 * 2 1 3 13 13 C 1.46902 * 110.99573 * 58.95614 * 12 2 1 14 14 C 1.46898 * 110.99888 * 295.00248 * 12 2 1 15 15 N 1.46501 * 109.46789 * 204.99783 * 14 12 2 16 16 C 1.46762 * 124.34893 * 90.00088 * 15 14 12 17 17 C 1.54481 * 105.47529 * 197.01392 * 16 15 14 18 18 C 1.54626 * 101.76651 * 334.58612 * 17 16 15 19 19 H 1.08997 * 110.49351 * 143.47305 * 18 17 16 20 20 C 1.52997 * 110.48765 * 266.12254 * 18 17 16 21 21 C 1.34418 * 124.35082 * 269.70350 * 15 14 12 22 22 O 1.21285 * 124.94402 * 359.56842 * 21 15 14 23 23 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 25 25 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 26 26 H 0.97003 * 120.00488 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47457 * 60.00221 * 13 12 2 28 28 H 1.09001 * 109.46615 * 179.97438 * 13 12 2 29 29 H 1.08990 * 109.47358 * 299.99539 * 13 12 2 30 30 H 1.08994 * 109.47465 * 324.99806 * 14 12 2 31 31 H 1.09004 * 109.47000 * 85.00411 * 14 12 2 32 32 H 1.08998 * 110.24590 * 316.01848 * 16 15 14 33 33 H 1.09002 * 110.24474 * 78.01708 * 16 15 14 34 34 H 1.09007 * 110.97044 * 92.70437 * 17 16 15 35 35 H 1.08996 * 110.97293 * 216.42968 * 17 16 15 36 36 H 1.08999 * 109.47315 * 59.99247 * 20 18 17 37 37 H 1.08998 * 109.47575 * 179.97438 * 20 18 17 38 38 H 1.09007 * 109.46822 * 299.99468 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2459 14 6 1.6486 0.0391 2.4181 15 7 2.5924 -0.2873 3.4900 16 6 3.8317 0.4525 3.7559 17 6 4.6849 -0.4788 4.6453 18 6 3.6008 -1.3519 5.3187 19 1 3.9549 -2.3760 5.4370 20 6 3.2028 -0.7617 6.6729 21 6 2.4316 -1.2993 4.3599 22 8 1.4879 -2.0610 4.3728 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1613 -3.4844 27 1 1.8762 -2.6151 0.3647 28 1 1.9060 -2.5658 2.1435 29 1 0.4385 -2.0743 1.2639 30 1 1.6783 1.1108 2.2217 31 1 0.6414 -0.2470 2.7212 32 1 4.3527 0.6636 2.8220 33 1 3.6113 1.3803 4.2838 34 1 5.3565 -1.0882 4.0406 35 1 5.2422 0.0932 5.3872 36 1 2.8085 0.2443 6.5291 37 1 2.4387 -1.3888 7.1322 38 1 4.0774 -0.7198 7.3222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839990418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:09 Heat of formation + Delta-G solvation = -26.161474 kcal Electronic energy + Delta-G solvation = -18110.419985 eV Core-core repulsion = 15374.064280 eV Total energy + Delta-G solvation = -2736.355705 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29959 -37.03025 -36.12952 -33.45250 -32.17099 -29.14903 -28.29274 -26.58036 -25.24065 -24.94686 -23.37931 -21.15643 -19.65302 -18.77892 -16.67362 -16.20930 -15.69950 -15.37986 -14.98977 -14.37887 -13.95798 -13.58315 -13.23502 -13.16949 -13.06368 -12.52902 -12.38452 -12.24848 -12.06740 -11.52285 -11.12359 -11.03150 -10.93807 -10.88503 -10.76874 -10.67496 -10.51704 -10.02931 -9.94478 -9.38993 -8.95671 -8.45344 -8.40570 -7.22230 -6.02943 -4.06664 2.86535 3.30478 3.36412 3.37222 3.41835 4.38964 4.41229 4.52782 4.82624 5.05755 5.11973 5.28949 5.30372 5.43599 5.52343 5.66462 5.72593 5.82304 5.88558 5.95571 5.99568 6.11906 6.33981 6.50362 6.66669 6.74294 6.88426 6.96246 7.07788 7.40098 7.50812 7.71667 7.81367 8.06377 8.33375 8.48540 8.59082 8.99009 9.58484 11.04095 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.005747 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.682804 B = 4870.901105 C = 4977.468962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.215 3.785 3 H 0.040 0.960 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.549 5.549 13 C 0.040 3.960 14 C 0.287 3.713 15 N -0.601 5.601 16 C 0.104 3.896 17 C -0.128 4.128 18 C -0.128 4.128 19 H 0.101 0.899 20 C -0.132 4.132 21 C 0.519 3.481 22 O -0.537 6.537 23 H 0.033 0.967 24 H 0.006 0.994 25 H 0.090 0.910 26 H 0.260 0.740 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.020 0.980 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.104 0.364 14.220 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.109 3.891 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.274 5.274 13 C -0.109 4.109 14 C 0.076 3.924 15 N -0.335 5.335 16 C -0.019 4.019 17 C -0.166 4.166 18 C -0.150 4.150 19 H 0.119 0.881 20 C -0.190 4.190 21 C 0.306 3.694 22 O -0.414 6.414 23 H 0.052 0.948 24 H 0.025 0.975 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.979 0.109 13.971 15.197 hybrid contribution -0.563 -0.352 -0.976 1.181 sum 5.415 -0.244 12.995 14.080 Atomic orbital electron populations 1.22447 1.00629 0.99670 1.00550 1.19304 0.89834 0.94348 0.85600 0.94246 1.21090 1.30628 1.12475 0.89557 0.91949 1.24917 0.95212 0.95114 0.98996 1.69879 1.37035 1.23047 1.23448 0.86507 0.79242 0.79276 0.82443 1.20796 1.21284 1.19883 1.62074 1.60387 1.02707 1.02252 1.22220 0.97276 0.90367 1.00998 1.21757 0.89143 0.97772 0.83704 1.48492 1.23616 1.31043 1.30383 1.22020 0.85101 0.94535 1.00268 1.22681 0.96933 0.98028 0.98960 1.21956 0.95218 1.02015 0.95774 0.88114 1.21609 1.01855 1.01079 0.94455 1.20785 0.87144 0.79866 0.81645 1.90689 1.34708 1.42838 1.73209 0.94825 0.97521 0.89186 0.92981 0.91233 0.93482 0.96195 0.89873 0.92881 0.89702 0.91633 0.89978 0.89534 0.92329 0.91945 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.34 37.16 0.31 -3.92 16 2 C 0.22 5.37 2.27 -68.86 -0.16 5.22 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.50 -13.61 7.94 -34.44 -0.27 -13.88 16 5 H 0.06 1.73 6.75 -52.49 -0.35 1.37 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.55 -12.09 4.84 -240.20 -1.16 -13.25 16 13 C 0.04 0.87 8.69 60.07 0.52 1.40 16 14 C 0.29 5.46 4.79 -63.32 -0.30 5.15 16 15 N -0.60 -9.76 3.14 -175.90 -0.55 -10.32 16 16 C 0.10 1.26 7.35 -3.12 -0.02 1.24 16 17 C -0.13 -1.25 6.71 -25.10 -0.17 -1.41 16 18 C -0.13 -1.49 3.54 -90.63 -0.32 -1.81 16 19 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 20 C -0.13 -1.25 9.16 37.16 0.34 -0.91 16 21 C 0.52 8.63 6.59 -10.85 -0.07 8.56 16 22 O -0.54 -11.01 16.25 5.55 0.09 -10.92 16 23 H 0.03 0.81 6.39 -51.93 -0.33 0.48 16 24 H 0.01 0.13 7.13 -51.93 -0.37 -0.24 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.07 1.59 6.53 -51.93 -0.34 1.25 16 28 H 0.05 1.01 5.92 -51.93 -0.31 0.70 16 29 H 0.02 0.44 6.27 -51.93 -0.33 0.12 16 30 H 0.08 1.49 7.72 -51.93 -0.40 1.09 16 31 H 0.05 1.08 7.34 -51.93 -0.38 0.70 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.61 7.90 -51.93 -0.41 0.20 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -30.57 298.35 -7.80 -38.37 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.04 Total: -1.25 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -0.24 Total: 1.14 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -1.09 Total: -48.15 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.57 -7.80 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839990418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.212 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds