Wall clock time and date at job start Sun Mar 29 2020 22:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.50698 * 109.47395 * 240.00137 * 2 1 3 5 5 H 1.07999 * 120.00165 * 240.00313 * 4 2 1 6 6 C 1.37873 * 120.00194 * 59.99957 * 4 2 1 7 7 N 1.31512 * 119.99839 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47130 * 89.99894 * 8 6 4 10 10 H 1.48495 * 109.47075 * 209.99589 * 8 6 4 11 11 H 1.48496 * 109.47207 * 330.00095 * 8 6 4 12 12 N 1.46906 * 109.47112 * 119.99911 * 2 1 3 13 13 C 1.46902 * 110.99573 * 58.95614 * 12 2 1 14 14 C 1.46898 * 110.99888 * 295.00248 * 12 2 1 15 15 N 1.46501 * 109.46789 * 204.99783 * 14 12 2 16 16 C 1.46762 * 124.34893 * 90.00088 * 15 14 12 17 17 C 1.54481 * 105.47529 * 197.01392 * 16 15 14 18 18 C 1.54626 * 101.76651 * 334.58612 * 17 16 15 19 19 H 1.08997 * 110.49351 * 143.47305 * 18 17 16 20 20 C 1.52997 * 110.48765 * 266.12254 * 18 17 16 21 21 C 1.34418 * 124.35082 * 269.70350 * 15 14 12 22 22 O 1.21285 * 124.94402 * 359.56842 * 21 15 14 23 23 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 25 25 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 26 26 H 0.97003 * 120.00488 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.47457 * 60.00221 * 13 12 2 28 28 H 1.09001 * 109.46615 * 179.97438 * 13 12 2 29 29 H 1.08990 * 109.47358 * 299.99539 * 13 12 2 30 30 H 1.08994 * 109.47465 * 324.99806 * 14 12 2 31 31 H 1.09004 * 109.47000 * 85.00411 * 14 12 2 32 32 H 1.08998 * 110.24590 * 316.01848 * 16 15 14 33 33 H 1.09002 * 110.24474 * 78.01708 * 16 15 14 34 34 H 1.09007 * 110.97044 * 92.70437 * 17 16 15 35 35 H 1.08996 * 110.97293 * 216.42968 * 17 16 15 36 36 H 1.08999 * 109.47315 * 59.99247 * 20 18 17 37 37 H 1.08998 * 109.47575 * 179.97438 * 20 18 17 38 38 H 1.09007 * 109.46822 * 299.99468 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6294 -1.7583 -3.7121 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2459 14 6 1.6486 0.0391 2.4181 15 7 2.5924 -0.2873 3.4900 16 6 3.8317 0.4525 3.7559 17 6 4.6849 -0.4788 4.6453 18 6 3.6008 -1.3519 5.3187 19 1 3.9549 -2.3760 5.4370 20 6 3.2028 -0.7617 6.6729 21 6 2.4316 -1.2993 4.3599 22 8 1.4879 -2.0610 4.3728 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1613 -3.4844 27 1 1.8762 -2.6151 0.3647 28 1 1.9060 -2.5658 2.1435 29 1 0.4385 -2.0743 1.2639 30 1 1.6783 1.1108 2.2217 31 1 0.6414 -0.2470 2.7212 32 1 4.3527 0.6636 2.8220 33 1 3.6113 1.3803 4.2838 34 1 5.3565 -1.0882 4.0406 35 1 5.2422 0.0932 5.3872 36 1 2.8085 0.2443 6.5291 37 1 2.4387 -1.3888 7.1322 38 1 4.0774 -0.7198 7.3222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839990418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:09 Heat of formation + Delta-G solvation = -46.639191 kcal Electronic energy + Delta-G solvation = -18111.307965 eV Core-core repulsion = 15374.064280 eV Total energy + Delta-G solvation = -2737.243685 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52273 -38.81334 -37.40244 -35.07772 -33.75277 -30.68147 -29.69621 -28.15016 -27.24370 -26.09684 -24.97650 -22.23430 -21.38161 -20.15926 -18.35539 -17.79334 -17.13341 -16.89487 -16.45519 -15.98156 -15.48230 -14.95843 -14.85075 -14.57685 -14.35995 -14.06502 -13.45852 -13.38848 -13.18055 -13.08042 -12.95348 -12.83554 -12.69838 -12.55532 -12.35943 -12.05724 -11.91528 -11.73894 -11.70190 -10.99893 -10.66646 -10.51742 -9.81295 -9.02637 -8.12606 -6.23412 1.42107 1.43174 1.53245 1.58795 2.10932 2.43000 3.16609 3.38609 3.40023 3.63943 4.03686 4.06284 4.22319 4.34862 4.45911 4.52489 4.63092 4.64956 4.71281 4.79950 4.82116 4.88202 5.04015 5.05310 5.07421 5.13755 5.17805 5.35946 5.43261 5.52168 5.66426 5.77431 6.05462 6.26350 6.41302 6.60983 6.87264 7.21385 7.45639 8.93357 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.005747 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.682804 B = 4870.901105 C = 4977.468962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.221 3.779 3 H 0.020 0.980 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.551 5.551 13 C 0.054 3.946 14 C 0.291 3.709 15 N -0.606 5.606 16 C 0.096 3.904 17 C -0.114 4.114 18 C -0.120 4.120 19 H 0.107 0.893 20 C -0.128 4.128 21 C 0.504 3.496 22 O -0.586 6.586 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.067 0.933 26 H 0.262 0.738 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 0.658 15.361 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.114 3.886 3 H 0.038 0.962 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.277 5.277 13 C -0.094 4.094 14 C 0.079 3.921 15 N -0.339 5.339 16 C -0.026 4.026 17 C -0.151 4.151 18 C -0.141 4.141 19 H 0.125 0.875 20 C -0.185 4.185 21 C 0.293 3.707 22 O -0.467 6.467 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.111 0.889 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.777 0.422 15.139 17.025 hybrid contribution -1.121 -0.415 -1.284 1.755 sum 6.656 0.006 13.854 15.370 Atomic orbital electron populations 1.22257 1.00355 0.99042 1.00286 1.19077 0.89894 0.93276 0.86331 0.96165 1.21304 1.30858 1.12471 0.90846 0.92853 1.25635 0.95319 0.95758 1.01656 1.69986 1.37631 1.23998 1.24136 0.85545 0.78717 0.78240 0.79039 1.20497 1.20654 1.19519 1.62031 1.60381 1.02640 1.02600 1.22043 0.96533 0.90434 1.00422 1.21603 0.89431 0.97839 0.83197 1.48593 1.24500 1.31594 1.29233 1.22336 0.83607 0.95788 1.00831 1.22724 0.95994 0.97328 0.99051 1.22000 0.93306 1.03237 0.95587 0.87458 1.21626 1.02981 1.00508 0.93392 1.21802 0.87843 0.78898 0.82194 1.90651 1.36948 1.44500 1.74575 0.95524 0.95647 0.91420 0.92839 0.92454 0.93144 0.97101 0.88907 0.94520 0.90609 0.89027 0.89948 0.85558 0.92253 0.93221 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.91 8.34 71.98 0.60 -7.31 16 2 C 0.22 11.21 2.27 44.17 0.10 11.31 16 3 H 0.02 1.11 7.93 -2.39 -0.02 1.09 16 4 C -0.52 -28.46 7.94 25.60 0.20 -28.26 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.04 11.32 21.45 0.24 -51.79 16 8 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.55 -24.53 4.84 -913.84 -4.42 -28.95 16 13 C 0.05 2.43 8.69 127.69 1.11 3.54 16 14 C 0.29 11.08 4.79 170.81 0.82 11.89 16 15 N -0.61 -19.13 3.14 -829.03 -2.61 -21.74 16 16 C 0.10 2.09 7.35 86.83 0.64 2.73 16 17 C -0.11 -1.78 6.71 31.65 0.21 -1.57 16 18 C -0.12 -2.48 3.54 -10.80 -0.04 -2.52 16 19 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 20 C -0.13 -2.01 9.16 71.98 0.66 -1.35 16 21 C 0.50 16.39 6.59 87.90 0.58 16.97 16 22 O -0.59 -24.35 16.25 -3.05 -0.05 -24.40 16 23 H 0.03 1.30 6.39 -2.38 -0.02 1.29 16 24 H 0.02 1.11 7.13 -2.39 -0.02 1.09 16 25 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 26 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.06 2.67 6.53 -2.38 -0.02 2.66 16 28 H 0.05 2.21 5.92 -2.39 -0.01 2.20 16 29 H 0.01 0.49 6.27 -2.39 -0.02 0.47 16 30 H 0.09 3.31 7.72 -2.39 -0.02 3.29 16 31 H 0.04 1.52 7.34 -2.39 -0.02 1.50 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.13 1.06 7.90 -2.39 -0.02 1.04 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -66.89 298.35 1.55 -65.34 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.03 Total: 9.09 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 5.33 Total: 6.72 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -6.79 Total: -102.48 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -66.89 1.55 -65.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839990418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.698 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds