Wall clock time and date at job start Sun Mar 29 2020 22:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47814 * 2 1 4 4 C 1.50710 * 109.46832 * 120.00150 * 2 1 3 5 5 H 1.07997 * 120.00113 * 119.99626 * 4 2 1 6 6 C 1.37872 * 119.99718 * 299.99554 * 4 2 1 7 7 N 1.31519 * 120.00365 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46880 * 89.99851 * 8 6 4 10 10 H 1.48500 * 109.47076 * 210.00088 * 8 6 4 11 11 H 1.48496 * 109.46926 * 330.00045 * 8 6 4 12 12 N 1.46899 * 109.47014 * 239.99529 * 2 1 3 13 13 C 1.46900 * 111.00176 * 65.64234 * 12 2 1 14 14 C 1.46903 * 111.00343 * 301.68604 * 12 2 1 15 15 N 1.46501 * 109.47124 * 208.47198 * 14 12 2 16 16 C 1.46764 * 124.34638 * 269.72241 * 15 14 12 17 17 C 1.54661 * 105.37881 * 162.85830 * 16 15 14 18 18 C 1.54627 * 101.68685 * 25.76805 * 17 16 15 19 19 H 1.08994 * 110.48455 * 216.31127 * 18 17 16 20 20 C 1.52991 * 110.60027 * 93.71916 * 18 17 16 21 21 C 1.34419 * 124.35128 * 90.02514 * 15 14 12 22 22 O 1.21285 * 124.94084 * 0.38544 * 21 15 14 23 23 H 1.09000 * 109.46972 * 305.01107 * 1 2 3 24 24 H 1.08996 * 109.46804 * 65.00976 * 1 2 3 25 25 H 1.09001 * 109.47590 * 185.01319 * 1 2 3 26 26 H 0.96996 * 120.00115 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.46795 * 59.99515 * 13 12 2 28 28 H 1.09003 * 109.46756 * 300.00220 * 13 12 2 29 29 H 1.09001 * 109.47420 * 180.02562 * 13 12 2 30 30 H 1.09007 * 109.46917 * 328.47303 * 14 12 2 31 31 H 1.09000 * 109.47005 * 88.46481 * 14 12 2 32 32 H 1.09000 * 110.24432 * 281.98813 * 16 15 14 33 33 H 1.09001 * 110.24595 * 43.98546 * 16 15 14 34 34 H 1.09003 * 111.19114 * 267.59078 * 17 16 15 35 35 H 1.09006 * 110.85048 * 143.79336 * 17 16 15 36 36 H 1.08998 * 109.47752 * 303.71109 * 20 18 17 37 37 H 1.09002 * 109.46922 * 63.70629 * 20 18 17 38 38 H 1.08998 * 109.47445 * 183.70451 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0196 -0.6926 -1.1994 13 6 1.6619 0.0468 -2.4173 14 6 1.5160 -2.0715 -1.2536 15 7 2.4701 -2.9116 -1.9816 16 6 2.4337 -3.1413 -3.4307 17 6 3.8318 -3.6939 -3.7937 18 6 4.2734 -4.3320 -2.4562 19 1 5.3438 -4.1952 -2.3034 20 6 3.9149 -5.8190 -2.4250 21 6 3.4880 -3.5758 -1.4074 22 8 3.7402 -3.5696 -0.2211 23 1 -0.3633 0.5896 0.8417 24 1 -0.3633 0.4341 -0.9314 25 1 -0.3634 -1.0237 0.0898 26 1 0.7090 1.1615 3.4844 27 1 2.1062 1.0415 -2.3821 28 1 0.5774 0.1355 -2.4830 29 1 2.0359 -0.4881 -3.2902 30 1 1.3945 -2.4541 -0.2401 31 1 0.5538 -2.0870 -1.7655 32 1 1.6613 -3.8696 -3.6779 33 1 2.2516 -2.2041 -3.9567 34 1 4.5092 -2.8913 -4.0855 35 1 3.7597 -4.4459 -4.5796 36 1 2.8455 -5.9388 -2.5984 37 1 4.4701 -6.3430 -3.2030 38 1 4.1739 -6.2348 -1.4512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839990419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:11 Heat of formation + Delta-G solvation = -23.515577 kcal Electronic energy + Delta-G solvation = -18362.511374 eV Core-core repulsion = 15626.270404 eV Total energy + Delta-G solvation = -2736.240970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09910 -37.07448 -35.88467 -33.21275 -32.18357 -28.97669 -28.68253 -26.26846 -25.33019 -24.82806 -23.21139 -21.19860 -19.55638 -18.72068 -16.49724 -16.37828 -15.63332 -15.13475 -14.75717 -14.02330 -13.90315 -13.54313 -13.46029 -13.08191 -13.00883 -12.46869 -12.29013 -12.11600 -11.86894 -11.72701 -11.37737 -10.95017 -10.84334 -10.82668 -10.73106 -10.55872 -10.44669 -10.04681 -9.84354 -9.13546 -8.87509 -8.38338 -8.19041 -7.23648 -5.93638 -3.95474 3.13705 3.41581 3.46756 3.53848 3.57713 4.50305 4.53808 4.58365 4.85928 5.11079 5.16882 5.36703 5.39231 5.51490 5.52560 5.62517 5.68340 5.84876 5.91620 5.96639 5.99876 6.11539 6.20137 6.40486 6.45376 6.73502 6.79881 6.98030 7.16552 7.37843 7.66774 7.72668 7.98197 8.11655 8.37536 8.61656 8.77988 9.18027 9.70669 11.14013 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.008246 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.184127 B = 3394.922604 C = 4253.246630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.215 3.785 3 H 0.042 0.958 4 C -0.503 4.503 5 H 0.075 0.925 6 C 0.059 3.941 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.548 5.548 13 C 0.025 3.975 14 C 0.295 3.705 15 N -0.608 5.608 16 C 0.100 3.900 17 C -0.127 4.127 18 C -0.129 4.129 19 H 0.100 0.900 20 C -0.132 4.132 21 C 0.521 3.479 22 O -0.514 6.514 23 H 0.088 0.912 24 H 0.010 0.990 25 H 0.028 0.972 26 H 0.259 0.741 27 H 0.059 0.941 28 H 0.020 0.980 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 -8.639 -14.369 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.109 3.891 3 H 0.060 0.940 4 C -0.541 4.541 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.538 5.538 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.196 1.196 12 N -0.273 5.273 13 C -0.124 4.124 14 C 0.085 3.915 15 N -0.344 5.344 16 C -0.023 4.023 17 C -0.165 4.165 18 C -0.151 4.151 19 H 0.118 0.882 20 C -0.190 4.190 21 C 0.307 3.693 22 O -0.388 6.388 23 H 0.106 0.894 24 H 0.029 0.971 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.128 0.872 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.318 -8.483 -13.495 16.108 hybrid contribution -0.617 -0.132 0.639 0.898 sum 1.701 -8.615 -12.856 15.569 Atomic orbital electron populations 1.22442 1.00648 1.00057 0.99843 1.19306 0.89674 0.94552 0.85535 0.94047 1.21330 1.30503 1.12870 0.89417 0.90700 1.24900 0.95125 0.95064 0.99033 1.69903 1.37401 1.23220 1.23325 0.86521 0.78375 0.80560 0.82226 1.20753 1.21561 1.19577 1.61986 1.60543 1.01605 1.03215 1.22394 0.97928 0.98815 0.93221 1.21813 0.86234 0.86023 0.97462 1.48525 1.31057 1.47291 1.07516 1.22084 0.97301 1.00657 0.82298 1.22674 0.96415 1.00719 0.96666 1.21964 1.01561 0.96502 0.95058 0.88197 1.21596 1.01732 0.93048 1.02588 1.20650 0.80771 0.79191 0.88706 1.90762 1.69161 1.63030 1.15892 0.89366 0.97146 0.95293 0.93157 0.92264 0.96159 0.93361 0.87202 0.94112 0.91822 0.90833 0.90177 0.89749 0.92388 0.91832 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.33 37.16 0.31 -3.78 16 2 C 0.22 5.53 2.33 -68.86 -0.16 5.37 16 3 H 0.04 1.17 8.12 -51.93 -0.42 0.75 16 4 C -0.50 -14.46 7.54 -34.44 -0.26 -14.72 16 5 H 0.07 2.29 6.79 -52.49 -0.36 1.94 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.90 -26.24 11.38 55.43 0.63 -25.61 16 8 Si 0.90 22.93 29.54 -169.99 -5.02 17.91 16 9 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 12 N -0.55 -12.05 4.83 -240.18 -1.16 -13.22 16 13 C 0.03 0.45 9.17 60.06 0.55 1.00 16 14 C 0.30 5.97 4.24 -63.31 -0.27 5.71 16 15 N -0.61 -10.55 3.17 -175.79 -0.56 -11.10 16 16 C 0.10 1.21 7.25 -3.02 -0.02 1.18 16 17 C -0.13 -1.27 6.72 -25.00 -0.17 -1.44 16 18 C -0.13 -1.66 3.52 -90.64 -0.32 -1.98 16 19 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 20 C -0.13 -1.41 9.18 37.15 0.34 -1.07 16 21 C 0.52 9.80 7.34 -10.86 -0.08 9.72 16 22 O -0.51 -12.44 17.23 5.55 0.10 -12.34 16 23 H 0.09 2.35 6.22 -51.93 -0.32 2.02 16 24 H 0.01 0.21 6.32 -51.93 -0.33 -0.12 16 25 H 0.03 0.67 7.22 -51.93 -0.37 0.29 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.02 0.35 6.34 -51.93 -0.33 0.02 16 29 H 0.05 0.73 6.00 -51.93 -0.31 0.42 16 30 H 0.11 2.64 5.93 -51.93 -0.31 2.33 16 31 H 0.04 0.74 7.76 -51.93 -0.40 0.34 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.84 6.15 -51.93 -0.32 0.52 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.61 7.91 -51.93 -0.41 0.20 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 298.46 15.07 4.50 4.50 Total: -1.00 -32.64 298.46 -7.67 -40.31 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.98 Total: -2.03 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -0.17 Total: 1.60 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -1.09 Total: -49.93 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.10 Total: -12.34 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.64 -7.67 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839990419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.794 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds