Wall clock time and date at job start Sun Mar 29 2020 22:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47814 * 2 1 4 4 C 1.50710 * 109.46832 * 120.00150 * 2 1 3 5 5 H 1.07997 * 120.00113 * 119.99626 * 4 2 1 6 6 C 1.37872 * 119.99718 * 299.99554 * 4 2 1 7 7 N 1.31519 * 120.00365 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46880 * 89.99851 * 8 6 4 10 10 H 1.48500 * 109.47076 * 210.00088 * 8 6 4 11 11 H 1.48496 * 109.46926 * 330.00045 * 8 6 4 12 12 N 1.46899 * 109.47014 * 239.99529 * 2 1 3 13 13 C 1.46900 * 111.00176 * 65.64234 * 12 2 1 14 14 C 1.46903 * 111.00343 * 301.68604 * 12 2 1 15 15 N 1.46501 * 109.47124 * 208.47198 * 14 12 2 16 16 C 1.46764 * 124.34638 * 269.72241 * 15 14 12 17 17 C 1.54661 * 105.37881 * 162.85830 * 16 15 14 18 18 C 1.54627 * 101.68685 * 25.76805 * 17 16 15 19 19 H 1.08994 * 110.48455 * 216.31127 * 18 17 16 20 20 C 1.52991 * 110.60027 * 93.71916 * 18 17 16 21 21 C 1.34419 * 124.35128 * 90.02514 * 15 14 12 22 22 O 1.21285 * 124.94084 * 0.38544 * 21 15 14 23 23 H 1.09000 * 109.46972 * 305.01107 * 1 2 3 24 24 H 1.08996 * 109.46804 * 65.00976 * 1 2 3 25 25 H 1.09001 * 109.47590 * 185.01319 * 1 2 3 26 26 H 0.96996 * 120.00115 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.46795 * 59.99515 * 13 12 2 28 28 H 1.09003 * 109.46756 * 300.00220 * 13 12 2 29 29 H 1.09001 * 109.47420 * 180.02562 * 13 12 2 30 30 H 1.09007 * 109.46917 * 328.47303 * 14 12 2 31 31 H 1.09000 * 109.47005 * 88.46481 * 14 12 2 32 32 H 1.09000 * 110.24432 * 281.98813 * 16 15 14 33 33 H 1.09001 * 110.24595 * 43.98546 * 16 15 14 34 34 H 1.09003 * 111.19114 * 267.59078 * 17 16 15 35 35 H 1.09006 * 110.85048 * 143.79336 * 17 16 15 36 36 H 1.08998 * 109.47752 * 303.71109 * 20 18 17 37 37 H 1.09002 * 109.46922 * 63.70629 * 20 18 17 38 38 H 1.08998 * 109.47445 * 183.70451 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0196 -0.6926 -1.1994 13 6 1.6619 0.0468 -2.4173 14 6 1.5160 -2.0715 -1.2536 15 7 2.4701 -2.9116 -1.9816 16 6 2.4337 -3.1413 -3.4307 17 6 3.8318 -3.6939 -3.7937 18 6 4.2734 -4.3320 -2.4562 19 1 5.3438 -4.1952 -2.3034 20 6 3.9149 -5.8190 -2.4250 21 6 3.4880 -3.5758 -1.4074 22 8 3.7402 -3.5696 -0.2211 23 1 -0.3633 0.5896 0.8417 24 1 -0.3633 0.4341 -0.9314 25 1 -0.3634 -1.0237 0.0898 26 1 0.7090 1.1615 3.4844 27 1 2.1062 1.0415 -2.3821 28 1 0.5774 0.1355 -2.4830 29 1 2.0359 -0.4881 -3.2902 30 1 1.3945 -2.4541 -0.2401 31 1 0.5538 -2.0870 -1.7655 32 1 1.6613 -3.8696 -3.6779 33 1 2.2516 -2.2041 -3.9567 34 1 4.5092 -2.8913 -4.0855 35 1 3.7597 -4.4459 -4.5796 36 1 2.8455 -5.9388 -2.5984 37 1 4.4701 -6.3430 -3.2030 38 1 4.1739 -6.2348 -1.4512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839990419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:11 Heat of formation + Delta-G solvation = -47.135536 kcal Electronic energy + Delta-G solvation = -18363.535612 eV Core-core repulsion = 15626.270404 eV Total energy + Delta-G solvation = -2737.265208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.40621 -38.82368 -37.31078 -34.97160 -33.77713 -30.68659 -29.94040 -27.81752 -27.10582 -26.19419 -24.83864 -22.29256 -21.31152 -20.18249 -18.41047 -17.84674 -17.00164 -16.74380 -16.44241 -15.66699 -15.32734 -15.21266 -14.86965 -14.64943 -14.14493 -13.85686 -13.70074 -13.38259 -13.30978 -13.08164 -12.92642 -12.83060 -12.60713 -12.48137 -12.36637 -12.09653 -11.85962 -11.73815 -11.67111 -10.97680 -10.60917 -10.53186 -9.67132 -8.93794 -8.16131 -6.23369 1.33149 1.34204 1.48434 1.71855 2.21214 2.40004 3.12820 3.42007 3.53278 3.64593 4.03775 4.12377 4.21739 4.37570 4.47311 4.58349 4.61849 4.67172 4.71501 4.83803 4.86432 4.89478 5.01901 5.05191 5.10960 5.15702 5.17520 5.37038 5.46170 5.65056 5.69690 5.83623 6.13754 6.34964 6.43309 6.73067 6.90708 7.37925 7.45588 8.90158 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.008246 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.184127 B = 3394.922604 C = 4253.246630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.222 3.778 3 H 0.010 0.990 4 C -0.515 4.515 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.566 5.566 13 C 0.028 3.972 14 C 0.303 3.697 15 N -0.610 5.610 16 C 0.092 3.908 17 C -0.111 4.111 18 C -0.121 4.121 19 H 0.101 0.899 20 C -0.127 4.127 21 C 0.500 3.500 22 O -0.587 6.587 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -9.636 -17.327 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.115 3.885 3 H 0.028 0.972 4 C -0.554 4.554 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.556 5.556 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.292 5.292 13 C -0.120 4.120 14 C 0.091 3.909 15 N -0.344 5.344 16 C -0.030 4.030 17 C -0.148 4.148 18 C -0.143 4.143 19 H 0.119 0.881 20 C -0.185 4.185 21 C 0.288 3.712 22 O -0.467 6.467 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.214 -9.480 -16.520 19.175 hybrid contribution -0.585 0.163 1.489 1.608 sum 1.628 -9.317 -15.031 17.759 Atomic orbital electron populations 1.22189 0.99308 0.99629 1.00155 1.18995 0.90519 0.92711 0.86325 0.97173 1.21438 1.30329 1.12226 0.91377 0.93508 1.25498 0.95464 0.95780 1.01226 1.69982 1.37832 1.23802 1.23958 0.85737 0.78343 0.78666 0.79931 1.20409 1.19760 1.21020 1.61835 1.61366 1.02526 1.03487 1.22456 0.98678 0.98624 0.92247 1.21465 0.88127 0.85241 0.96026 1.48652 1.29909 1.45848 1.10019 1.22496 0.99607 1.02320 0.78534 1.22739 0.94737 1.01658 0.95682 1.21997 1.00576 0.97231 0.94481 0.88053 1.21615 1.02608 0.91477 1.02772 1.21873 0.81234 0.79164 0.88900 1.90711 1.71110 1.65540 1.19329 0.92089 0.94181 0.95372 0.92857 0.92624 0.95151 0.90102 0.92109 0.91591 0.89137 0.89525 0.89569 0.85474 0.91918 0.88050 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.40 8.33 71.98 0.60 -6.80 16 2 C 0.22 11.69 2.33 44.17 0.10 11.79 16 3 H 0.01 0.60 8.12 -2.39 -0.02 0.58 16 4 C -0.52 -30.96 7.54 25.60 0.19 -30.76 16 5 H 0.05 3.05 6.79 -2.91 -0.02 3.03 16 6 C 0.02 1.13 5.30 84.65 0.45 1.58 16 7 N -0.92 -54.56 11.38 21.45 0.24 -54.32 16 8 Si 0.95 48.54 29.54 68.60 2.03 50.57 16 9 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.28 -15.12 7.11 99.48 0.71 -14.41 16 12 N -0.57 -24.96 4.83 -913.81 -4.42 -29.37 16 13 C 0.03 0.93 9.17 127.69 1.17 2.10 16 14 C 0.30 12.28 4.24 170.80 0.72 13.00 16 15 N -0.61 -20.53 3.17 -828.65 -2.63 -23.16 16 16 C 0.09 1.83 7.25 86.90 0.63 2.46 16 17 C -0.11 -1.70 6.72 31.71 0.21 -1.49 16 18 C -0.12 -2.86 3.52 -10.80 -0.04 -2.90 16 19 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 20 C -0.13 -2.38 9.18 71.98 0.66 -1.72 16 21 C 0.50 18.98 7.34 87.90 0.65 19.63 16 22 O -0.59 -30.17 17.23 -3.05 -0.05 -30.22 16 23 H 0.06 3.28 6.22 -2.39 -0.01 3.27 16 24 H 0.04 1.65 6.32 -2.39 -0.02 1.63 16 25 H 0.03 1.31 7.22 -2.39 -0.02 1.29 16 26 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.03 0.96 6.34 -2.39 -0.02 0.94 16 29 H 0.08 2.17 6.00 -2.39 -0.01 2.15 16 30 H 0.06 3.07 5.93 -2.38 -0.01 3.05 16 31 H 0.07 2.30 7.76 -2.39 -0.02 2.28 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.54 6.15 -2.39 -0.01 1.53 16 34 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.13 0.98 7.91 -2.38 -0.02 0.96 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -76.52 298.46 1.55 -74.97 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.03 Total: 4.64 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.35 Total: 6.90 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -6.80 Total: -106.85 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.22 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -76.52 1.55 -74.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839990419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.832 kcal (2) G-P(sol) polarization free energy of solvation -76.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds