Wall clock time and date at job start Sun Mar 29 2020 22:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47166 * 89.99890 * 8 6 4 10 10 H 1.48491 * 109.47208 * 210.00081 * 8 6 4 11 11 H 1.48505 * 109.47202 * 330.00211 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 N 1.46497 * 109.47129 * 154.99908 * 14 12 2 16 16 C 1.46769 * 124.35007 * 269.72383 * 15 14 12 17 17 C 1.54655 * 105.38165 * 162.85517 * 16 15 14 18 18 C 1.54624 * 101.68689 * 25.76753 * 17 16 15 19 19 H 1.09006 * 110.48817 * 93.66516 * 18 17 16 20 20 C 1.53003 * 110.48964 * 216.30898 * 18 17 16 21 21 C 1.34421 * 124.35353 * 90.02533 * 15 14 12 22 22 O 1.21285 * 124.93603 * 0.38857 * 21 15 14 23 23 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 24 24 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 25 25 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 28 28 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 29 29 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 30 30 H 1.08997 * 109.46815 * 274.99867 * 14 12 2 31 31 H 1.09004 * 109.46816 * 34.99910 * 14 12 2 32 32 H 1.08993 * 110.24806 * 281.98600 * 16 15 14 33 33 H 1.09004 * 110.24263 * 43.98656 * 16 15 14 34 34 H 1.09001 * 111.19591 * 267.59669 * 17 16 15 35 35 H 1.08997 * 110.85554 * 143.79082 * 17 16 15 36 36 H 1.09001 * 109.47380 * 176.22926 * 20 18 17 37 37 H 1.08996 * 109.46925 * 296.22949 * 20 18 17 38 38 H 1.08998 * 109.47043 * 56.22484 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1122 11 1 2.4881 -2.5654 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 7 2.7155 -0.2664 -3.4518 16 6 4.0116 0.3934 -3.6488 17 6 4.8361 -0.5760 -4.5275 18 6 3.7223 -1.3496 -5.2704 19 1 3.5102 -0.8831 -6.2325 20 6 4.1227 -2.8140 -5.4606 21 6 2.5228 -1.2434 -4.3547 22 8 1.5316 -1.9388 -4.4248 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.7089 1.1612 3.4844 27 1 1.8663 -2.5522 -2.1648 28 1 0.3555 -1.9520 -1.4399 29 1 1.6466 -2.5988 -0.3991 30 1 0.7417 -0.1074 -2.7608 31 1 1.8499 1.1582 -2.1789 32 1 3.8758 1.3468 -4.1593 33 1 4.5071 0.5454 -2.6898 34 1 5.4366 -1.2489 -3.9154 35 1 5.4632 -0.0259 -5.2290 36 1 3.3002 -3.3582 -5.9249 37 1 5.0027 -2.8697 -6.1013 38 1 4.3504 -3.2572 -4.4912 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839990423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:14 Heat of formation + Delta-G solvation = -26.533419 kcal Electronic energy + Delta-G solvation = -18129.201563 eV Core-core repulsion = 15392.829729 eV Total energy + Delta-G solvation = -2736.371834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24958 -37.02284 -36.04394 -33.50627 -32.24422 -29.22596 -28.23918 -26.55696 -25.23400 -24.74826 -23.30383 -21.25413 -19.60281 -18.71176 -16.67870 -16.48879 -15.82266 -15.34162 -14.64125 -14.28442 -13.88965 -13.75961 -13.36591 -13.24019 -12.87397 -12.60358 -12.36106 -12.06134 -11.80195 -11.54332 -11.18526 -11.06352 -10.96478 -10.84258 -10.76252 -10.66271 -10.52169 -10.04349 -9.93822 -9.38653 -8.97330 -8.45670 -8.39531 -7.22757 -6.02565 -4.06166 2.86845 3.30614 3.36910 3.38110 3.41900 4.40603 4.41760 4.56122 4.79796 5.08544 5.14424 5.29646 5.33629 5.44594 5.60114 5.65914 5.78294 5.84947 5.91261 5.96281 6.05796 6.18134 6.33988 6.48405 6.66664 6.74650 6.89011 6.94549 7.08680 7.38355 7.50892 7.71075 7.82486 8.07885 8.33840 8.48986 8.59370 8.99659 9.58894 11.04415 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035751 B = 0.005972 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.012607 B = 4687.653989 C = 4806.590693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.215 3.785 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.548 5.548 13 C 0.042 3.958 14 C 0.287 3.713 15 N -0.603 5.603 16 C 0.103 3.897 17 C -0.127 4.127 18 C -0.127 4.127 19 H 0.102 0.898 20 C -0.132 4.132 21 C 0.518 3.482 22 O -0.536 6.536 23 H 0.089 0.911 24 H 0.005 0.995 25 H 0.033 0.967 26 H 0.260 0.740 27 H 0.046 0.954 28 H 0.018 0.982 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.802 -0.653 -13.488 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.109 3.891 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.274 5.274 13 C -0.107 4.107 14 C 0.076 3.924 15 N -0.337 5.337 16 C -0.020 4.020 17 C -0.165 4.165 18 C -0.149 4.149 19 H 0.120 0.880 20 C -0.190 4.190 21 C 0.304 3.696 22 O -0.413 6.413 23 H 0.108 0.892 24 H 0.024 0.976 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.639 -0.917 -13.250 14.849 hybrid contribution -0.557 -0.208 0.899 1.078 sum 6.082 -1.125 -12.352 13.814 Atomic orbital electron populations 1.22440 1.00556 0.99715 1.00500 1.19308 0.89892 0.94248 0.85647 0.94345 1.21081 1.30521 1.12487 0.89507 0.91976 1.24921 0.95207 0.95165 0.98992 1.69878 1.37011 1.23123 1.23440 0.86502 0.78468 0.80016 0.82439 1.20710 1.21352 1.19970 1.62061 1.59719 1.03148 1.02442 1.22201 0.96333 0.91120 1.01027 1.21775 0.89284 0.96991 0.84353 1.48496 1.19528 1.35023 1.30615 1.22063 0.83790 0.95311 1.00844 1.22731 0.96889 0.98289 0.98621 1.21935 0.94860 0.98705 0.99385 0.88017 1.21597 1.01461 0.93567 1.02351 1.20809 0.87923 0.79265 0.81596 1.90684 1.32178 1.45452 1.72981 0.89210 0.97579 0.94757 0.92985 0.93556 0.96304 0.91224 0.92939 0.89858 0.91559 0.89699 0.89852 0.89696 0.91779 0.91968 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.26 37.16 0.31 -3.90 16 2 C 0.22 5.37 2.27 -68.86 -0.16 5.21 16 3 H 0.04 1.03 7.80 -51.93 -0.40 0.62 16 4 C -0.50 -13.57 7.91 -34.44 -0.27 -13.84 16 5 H 0.06 1.72 7.12 -52.49 -0.37 1.35 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.55 -12.07 4.80 -240.19 -1.15 -13.22 16 13 C 0.04 0.91 8.45 60.07 0.51 1.42 16 14 C 0.29 5.45 4.99 -63.31 -0.32 5.14 16 15 N -0.60 -9.80 3.15 -175.79 -0.55 -10.35 16 16 C 0.10 1.25 7.36 -3.03 -0.02 1.23 16 17 C -0.13 -1.24 6.71 -25.01 -0.17 -1.41 16 18 C -0.13 -1.48 3.53 -90.63 -0.32 -1.80 16 19 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 20 C -0.13 -1.43 9.08 37.16 0.34 -1.09 16 21 C 0.52 8.58 6.71 -10.86 -0.07 8.50 16 22 O -0.54 -10.87 16.17 5.55 0.09 -10.78 16 23 H 0.09 2.39 6.07 -51.92 -0.32 2.08 16 24 H 0.01 0.12 7.31 -51.93 -0.38 -0.26 16 25 H 0.03 0.83 6.42 -51.93 -0.33 0.49 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.05 0.99 6.17 -51.93 -0.32 0.67 16 28 H 0.02 0.41 6.38 -51.93 -0.33 0.08 16 29 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 30 H 0.05 1.06 7.35 -51.93 -0.38 0.68 16 31 H 0.08 1.49 7.64 -51.93 -0.40 1.10 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 0.83 7.90 -51.93 -0.41 0.42 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 LS Contribution 299.04 15.07 4.51 4.51 Total: -1.00 -30.49 299.04 -7.86 -38.36 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.09 Total: -1.18 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.27 Total: 0.95 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -1.08 Total: -48.17 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.49 -7.86 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839990423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.823 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds