Wall clock time and date at job start Sun Mar 29 2020 22:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47166 * 89.99890 * 8 6 4 10 10 H 1.48491 * 109.47208 * 210.00081 * 8 6 4 11 11 H 1.48505 * 109.47202 * 330.00211 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 N 1.46497 * 109.47129 * 154.99908 * 14 12 2 16 16 C 1.46769 * 124.35007 * 269.72383 * 15 14 12 17 17 C 1.54655 * 105.38165 * 162.85517 * 16 15 14 18 18 C 1.54624 * 101.68689 * 25.76753 * 17 16 15 19 19 H 1.09006 * 110.48817 * 93.66516 * 18 17 16 20 20 C 1.53003 * 110.48964 * 216.30898 * 18 17 16 21 21 C 1.34421 * 124.35353 * 90.02533 * 15 14 12 22 22 O 1.21285 * 124.93603 * 0.38857 * 21 15 14 23 23 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 24 24 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 25 25 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 26 26 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 28 28 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 29 29 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 30 30 H 1.08997 * 109.46815 * 274.99867 * 14 12 2 31 31 H 1.09004 * 109.46816 * 34.99910 * 14 12 2 32 32 H 1.08993 * 110.24806 * 281.98600 * 16 15 14 33 33 H 1.09004 * 110.24263 * 43.98656 * 16 15 14 34 34 H 1.09001 * 111.19591 * 267.59669 * 17 16 15 35 35 H 1.08997 * 110.85554 * 143.79082 * 17 16 15 36 36 H 1.09001 * 109.47380 * 176.22926 * 20 18 17 37 37 H 1.08996 * 109.46925 * 296.22949 * 20 18 17 38 38 H 1.08998 * 109.47043 * 56.22484 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5440 4.4118 10 1 1.3446 -0.9490 5.1122 11 1 2.4881 -2.5654 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 7 2.7155 -0.2664 -3.4518 16 6 4.0116 0.3934 -3.6488 17 6 4.8361 -0.5760 -4.5275 18 6 3.7223 -1.3496 -5.2704 19 1 3.5102 -0.8831 -6.2325 20 6 4.1227 -2.8140 -5.4606 21 6 2.5228 -1.2434 -4.3547 22 8 1.5316 -1.9388 -4.4248 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 0.7089 1.1612 3.4844 27 1 1.8663 -2.5522 -2.1648 28 1 0.3555 -1.9520 -1.4399 29 1 1.6466 -2.5988 -0.3991 30 1 0.7417 -0.1074 -2.7608 31 1 1.8499 1.1582 -2.1789 32 1 3.8758 1.3468 -4.1593 33 1 4.5071 0.5454 -2.6898 34 1 5.4366 -1.2489 -3.9154 35 1 5.4632 -0.0259 -5.2290 36 1 3.3002 -3.3582 -5.9249 37 1 5.0027 -2.8697 -6.1013 38 1 4.3504 -3.2572 -4.4912 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839990423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:14 Heat of formation + Delta-G solvation = -46.862522 kcal Electronic energy + Delta-G solvation = -18130.083099 eV Core-core repulsion = 15392.829729 eV Total energy + Delta-G solvation = -2737.253370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.47336 -38.80234 -37.31270 -35.09368 -33.85689 -30.76553 -29.68945 -28.10303 -27.30638 -25.97255 -24.81582 -22.33126 -21.36595 -20.05371 -18.35849 -17.78271 -17.44531 -17.02411 -16.30474 -15.78421 -15.41074 -14.97070 -14.75995 -14.59957 -14.44504 -14.15822 -13.58105 -13.42860 -13.04397 -12.97335 -12.86055 -12.76695 -12.64412 -12.54754 -12.36024 -12.08878 -11.92576 -11.86658 -11.68453 -11.03069 -10.64405 -10.50720 -9.80599 -9.02880 -8.12320 -6.23133 1.42251 1.43193 1.53086 1.59927 2.13034 2.43015 3.16591 3.39723 3.40067 3.66695 3.96579 4.10197 4.26433 4.34905 4.47361 4.51073 4.61635 4.64799 4.70798 4.82248 4.83710 4.88302 4.97318 5.05048 5.06874 5.13923 5.23444 5.35714 5.41839 5.51902 5.66243 5.77605 6.07715 6.27217 6.42055 6.60821 6.87423 7.23433 7.45879 8.93493 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035751 B = 0.005972 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.012607 B = 4687.653989 C = 4806.590693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.221 3.779 3 H 0.020 0.980 4 C -0.515 4.515 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.551 5.551 13 C 0.057 3.943 14 C 0.291 3.709 15 N -0.608 5.608 16 C 0.095 3.905 17 C -0.113 4.113 18 C -0.118 4.118 19 H 0.128 0.872 20 C -0.130 4.130 21 C 0.502 3.498 22 O -0.583 6.583 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.049 0.951 28 H 0.011 0.989 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 -0.441 -14.617 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.114 3.886 3 H 0.038 0.962 4 C -0.553 4.553 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.277 5.277 13 C -0.092 4.092 14 C 0.079 3.921 15 N -0.342 5.342 16 C -0.026 4.026 17 C -0.150 4.150 18 C -0.139 4.139 19 H 0.146 0.854 20 C -0.187 4.187 21 C 0.291 3.709 22 O -0.464 6.464 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.541 -0.689 -14.403 16.759 hybrid contribution -1.144 -0.246 1.202 1.677 sum 7.397 -0.934 -13.201 15.161 Atomic orbital electron populations 1.22253 1.00311 0.99126 1.00173 1.19081 0.89931 0.93180 0.86382 0.96232 1.21289 1.30762 1.12459 0.90818 0.92956 1.25638 0.95307 0.95805 1.01654 1.69985 1.37604 1.24068 1.24132 0.85543 0.78129 0.78873 0.78978 1.19957 1.20900 1.19823 1.62019 1.59605 1.03198 1.02831 1.22011 0.95775 0.91107 1.00269 1.21622 0.89697 0.97016 0.83782 1.48610 1.20568 1.35434 1.29545 1.22380 0.81986 0.96925 1.01344 1.22772 0.96141 0.97577 0.98534 1.22006 0.92817 0.99767 0.99337 0.85435 1.21607 1.02362 0.92694 1.02067 1.21836 0.88739 0.78281 0.82089 1.90648 1.34372 1.47015 1.74323 0.91441 0.95829 0.95367 0.92838 0.93262 0.97067 0.92604 0.94508 0.88939 0.88840 0.90763 0.90099 0.85495 0.93176 0.88481 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.89 8.26 71.98 0.59 -7.30 16 2 C 0.22 11.23 2.27 44.17 0.10 11.33 16 3 H 0.02 1.07 7.80 -2.39 -0.02 1.05 16 4 C -0.51 -28.43 7.91 25.60 0.20 -28.22 16 5 H 0.05 2.94 7.12 -2.91 -0.02 2.92 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -52.09 11.32 21.45 0.24 -51.85 16 8 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 N -0.55 -24.54 4.80 -913.81 -4.39 -28.93 16 13 C 0.06 2.55 8.45 127.69 1.08 3.63 16 14 C 0.29 11.06 4.99 170.81 0.85 11.92 16 15 N -0.61 -19.20 3.15 -828.68 -2.61 -21.80 16 16 C 0.10 2.07 7.36 86.89 0.64 2.71 16 17 C -0.11 -1.76 6.71 31.71 0.21 -1.54 16 18 C -0.12 -2.40 3.53 -10.80 -0.04 -2.43 16 19 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 20 C -0.13 -2.50 9.08 71.98 0.65 -1.84 16 21 C 0.50 16.19 6.71 87.90 0.59 16.78 16 22 O -0.58 -23.92 16.17 -3.05 -0.05 -23.97 16 23 H 0.07 3.66 6.07 -2.38 -0.01 3.64 16 24 H 0.02 1.03 7.31 -2.39 -0.02 1.02 16 25 H 0.03 1.38 6.42 -2.39 -0.02 1.37 16 26 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 27 H 0.05 2.16 6.17 -2.39 -0.01 2.14 16 28 H 0.01 0.50 6.38 -2.39 -0.02 0.49 16 29 H 0.06 2.61 6.76 -2.38 -0.02 2.60 16 30 H 0.04 1.52 7.35 -2.39 -0.02 1.50 16 31 H 0.09 3.30 7.64 -2.38 -0.02 3.29 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.34 7.90 -2.39 -0.02 1.32 16 35 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 Total: -1.00 -66.89 299.04 1.59 -65.30 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.03 Total: 9.23 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 5.33 Total: 6.27 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -6.75 Total: -102.59 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -66.89 1.59 -65.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839990423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.438 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds