Wall clock time and date at job start Sun Mar 29 2020 22:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47202 * 2 1 4 4 N 1.46505 * 109.46822 * 240.00012 * 2 1 3 5 5 C 1.46493 * 120.00299 * 242.74408 * 4 2 1 6 6 C 1.52994 * 109.47318 * 90.00027 * 5 4 2 7 7 C 1.53002 * 117.50335 * 243.62551 * 6 5 4 8 8 C 1.53001 * 117.50042 * 174.99883 * 6 5 4 9 9 C 1.34780 * 119.99564 * 62.74583 * 4 2 1 10 10 O 1.21583 * 120.00138 * 354.85286 * 9 4 2 11 11 N 1.34781 * 119.99644 * 174.84680 * 9 4 2 12 12 C 1.46495 * 119.99804 * 185.12053 * 11 9 4 13 13 C 1.50707 * 109.47007 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99991 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99872 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00349 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99882 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47085 * 59.99520 * 17 15 13 19 19 H 1.48500 * 109.47060 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47121 * 299.99667 * 17 15 13 21 21 H 1.08997 * 109.46971 * 183.04655 * 1 2 3 22 22 H 1.08999 * 109.46922 * 303.04301 * 1 2 3 23 23 H 1.09000 * 109.46906 * 63.04285 * 1 2 3 24 24 H 1.08994 * 109.46907 * 120.00441 * 2 1 3 25 25 H 1.08994 * 109.47570 * 305.44370 * 3 2 1 26 26 H 1.09002 * 109.46895 * 65.43675 * 3 2 1 27 27 H 1.08995 * 109.47299 * 185.43686 * 3 2 1 28 28 H 1.09001 * 109.47658 * 210.00443 * 5 4 2 29 29 H 1.09013 * 109.46924 * 330.00321 * 5 4 2 30 30 H 1.09004 * 115.54632 * 29.33111 * 6 5 4 31 31 H 1.09000 * 117.49380 * 359.97438 * 7 6 5 32 32 H 1.08998 * 117.50241 * 145.02075 * 7 6 5 33 33 H 1.09003 * 117.49952 * 214.97639 * 8 6 5 34 34 H 1.08996 * 117.50183 * 0.02562 * 8 6 5 35 35 H 0.97006 * 119.99714 * 5.12016 * 11 9 4 36 36 H 1.09007 * 109.47332 * 299.99961 * 12 11 9 37 37 H 1.08992 * 109.47555 * 60.00380 * 12 11 9 38 38 H 0.96998 * 120.00097 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8102 -1.9158 -1.0628 6 6 1.8770 -3.1281 -1.0561 7 6 1.8333 -3.9792 0.2146 8 6 2.5214 -4.5157 -1.0423 9 6 1.7389 -0.1987 -2.4195 10 8 1.0047 0.7635 -2.5347 11 7 2.2736 -0.7734 -3.5152 12 6 2.0617 -0.1730 -4.8345 13 6 2.7580 -1.0032 -5.8820 14 1 3.3042 -1.8892 -5.5936 15 6 2.6988 -0.6310 -7.2082 16 7 2.0341 0.4481 -7.5593 17 14 3.5625 -1.6597 -8.5064 18 1 3.0088 -3.0376 -8.4952 19 1 3.3476 -1.0512 -9.8438 20 1 5.0172 -1.7084 -8.2122 21 1 -0.3633 -1.0262 0.0546 22 1 -0.3633 0.5604 0.8614 23 1 -0.3633 0.4659 -0.9160 24 1 1.8933 -0.5139 0.8899 25 1 1.5994 1.9837 -0.8372 26 1 1.7584 1.9274 0.9347 27 1 3.1256 1.4440 -0.0974 28 1 3.5021 -1.9945 -1.9014 29 1 3.3726 -1.8851 -0.1294 30 1 0.9487 -3.0099 -1.6152 31 1 2.4698 -3.6756 1.0457 32 1 0.8762 -4.4210 0.4918 33 1 2.0169 -5.3105 -1.5918 34 1 3.6103 -4.5650 -1.0375 35 1 2.7987 -1.5845 -3.4300 36 1 0.9938 -0.1375 -5.0504 37 1 2.4679 0.8384 -4.8430 38 1 1.9921 0.7097 -8.4924 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894484228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:28 Heat of formation + Delta-G solvation = -9.887515 kcal Electronic energy + Delta-G solvation = -17822.375716 eV Core-core repulsion = 15086.725703 eV Total energy + Delta-G solvation = -2735.650013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.83475 -37.36363 -35.55267 -34.05999 -32.67200 -31.27776 -27.21447 -26.85744 -26.26131 -23.09076 -22.38799 -21.32406 -20.70578 -19.09177 -17.46238 -16.38500 -15.75553 -15.22905 -14.97087 -14.61805 -14.12398 -13.94240 -13.53911 -12.99396 -12.78178 -12.71239 -12.04527 -11.89188 -11.79005 -11.75683 -11.56401 -11.37211 -10.95278 -10.93360 -10.83880 -10.78204 -10.44481 -10.23855 -9.94217 -9.33477 -9.01781 -8.67199 -8.31756 -7.64982 -6.11584 -4.17847 3.22402 3.27863 3.32816 3.34979 3.77945 3.97240 4.34141 4.64584 4.79798 4.87758 5.01254 5.22354 5.24323 5.30133 5.39609 5.47960 5.56364 5.57664 5.73252 5.84162 5.89082 5.93449 6.05125 6.08115 6.21707 6.26136 6.56725 6.65858 7.04524 7.24788 7.57754 7.62941 7.63772 7.92698 8.07867 8.81502 8.99077 9.40073 9.54948 10.98657 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.006607 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.288005 B = 4236.641311 C = 5182.411179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 C -0.169 4.169 4 N -0.633 5.633 5 C 0.144 3.856 6 C -0.169 4.169 7 C -0.180 4.180 8 C -0.176 4.176 9 C 0.698 3.302 10 O -0.593 6.593 11 N -0.731 5.731 12 C 0.267 3.733 13 C -0.541 4.541 14 H 0.061 0.939 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 H 0.048 0.952 22 H 0.054 0.946 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.386 0.614 36 H 0.024 0.976 37 H 0.023 0.977 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 -6.807 15.924 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.064 3.936 3 C -0.227 4.227 4 N -0.371 5.371 5 C 0.020 3.980 6 C -0.189 4.189 7 C -0.217 4.217 8 C -0.214 4.214 9 C 0.399 3.601 10 O -0.472 6.472 11 N -0.384 5.384 12 C 0.146 3.854 13 C -0.579 4.579 14 H 0.079 0.921 15 C -0.140 4.140 16 N -0.524 5.524 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.220 0.780 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.074 -5.930 15.616 16.739 hybrid contribution 0.684 -1.063 -0.708 1.449 sum 1.758 -6.993 14.908 16.560 Atomic orbital electron populations 1.22239 0.95464 1.01464 1.03463 1.20683 0.94285 0.92738 0.85858 1.22230 1.00943 0.96668 1.02826 1.47305 1.57956 1.26829 1.05058 1.21014 0.92080 0.82546 1.02385 1.22938 1.02247 0.91920 1.01764 1.22994 1.02344 1.04552 0.91771 1.22932 1.00154 0.96883 1.01395 1.16075 0.80899 0.82927 0.80166 1.90793 1.41047 1.30065 1.85310 1.45891 1.55243 1.29878 1.07385 1.18939 0.97108 0.93648 0.75706 1.21194 1.33966 1.10966 0.91794 0.92122 1.24931 0.95328 0.95222 0.98481 1.69969 1.40705 1.23806 1.17872 0.86497 0.79911 0.80209 0.80405 1.20113 1.21090 1.20112 0.93293 0.92726 0.89845 0.90694 0.89944 0.92606 0.93126 0.90187 0.90681 0.87427 0.88977 0.89169 0.88758 0.88653 0.78026 0.95776 0.95950 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.20 37.16 0.34 -2.05 16 2 C 0.17 2.34 3.28 -67.93 -0.22 2.12 16 3 C -0.17 -2.41 8.99 37.15 0.33 -2.08 16 4 N -0.63 -10.05 2.42 -171.80 -0.42 -10.47 16 5 C 0.14 1.82 5.51 -4.05 -0.02 1.79 16 6 C -0.17 -2.02 6.01 -90.62 -0.54 -2.56 16 7 C -0.18 -1.73 10.18 -26.73 -0.27 -2.00 16 8 C -0.18 -1.77 10.25 -26.73 -0.27 -2.05 16 9 C 0.70 14.66 7.68 -86.91 -0.67 13.99 16 10 O -0.59 -14.48 12.62 5.29 0.07 -14.41 16 11 N -0.73 -16.11 5.42 -66.41 -0.36 -16.47 16 12 C 0.27 7.26 5.43 -5.19 -0.03 7.24 16 13 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 17 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 1.50 6.12 -51.93 -0.32 1.18 16 24 H 0.07 0.84 7.78 -51.93 -0.40 0.44 16 25 H 0.08 1.47 6.32 -51.93 -0.33 1.15 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.04 6.24 -51.93 -0.32 0.72 16 29 H 0.07 0.77 7.63 -51.92 -0.40 0.38 16 30 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.39 7.51 6.02 -40.82 -0.25 7.26 16 36 H 0.02 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -31.40 311.33 -8.27 -39.67 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.19 Total: 5.77 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.77 Total: 0.85 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.04 Total: -52.62 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.07 Total: -14.41 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.40 -8.27 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.781 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds