Wall clock time and date at job start Sun Mar 29 2020 22:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47202 * 2 1 4 4 N 1.46505 * 109.46822 * 240.00012 * 2 1 3 5 5 C 1.46493 * 120.00299 * 242.74408 * 4 2 1 6 6 C 1.52994 * 109.47318 * 90.00027 * 5 4 2 7 7 C 1.53002 * 117.50335 * 243.62551 * 6 5 4 8 8 C 1.53001 * 117.50042 * 174.99883 * 6 5 4 9 9 C 1.34780 * 119.99564 * 62.74583 * 4 2 1 10 10 O 1.21583 * 120.00138 * 354.85286 * 9 4 2 11 11 N 1.34781 * 119.99644 * 174.84680 * 9 4 2 12 12 C 1.46495 * 119.99804 * 185.12053 * 11 9 4 13 13 C 1.50707 * 109.47007 * 180.02562 * 12 11 9 14 14 H 1.07999 * 119.99991 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99872 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00349 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99882 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47085 * 59.99520 * 17 15 13 19 19 H 1.48500 * 109.47060 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47121 * 299.99667 * 17 15 13 21 21 H 1.08997 * 109.46971 * 183.04655 * 1 2 3 22 22 H 1.08999 * 109.46922 * 303.04301 * 1 2 3 23 23 H 1.09000 * 109.46906 * 63.04285 * 1 2 3 24 24 H 1.08994 * 109.46907 * 120.00441 * 2 1 3 25 25 H 1.08994 * 109.47570 * 305.44370 * 3 2 1 26 26 H 1.09002 * 109.46895 * 65.43675 * 3 2 1 27 27 H 1.08995 * 109.47299 * 185.43686 * 3 2 1 28 28 H 1.09001 * 109.47658 * 210.00443 * 5 4 2 29 29 H 1.09013 * 109.46924 * 330.00321 * 5 4 2 30 30 H 1.09004 * 115.54632 * 29.33111 * 6 5 4 31 31 H 1.09000 * 117.49380 * 359.97438 * 7 6 5 32 32 H 1.08998 * 117.50241 * 145.02075 * 7 6 5 33 33 H 1.09003 * 117.49952 * 214.97639 * 8 6 5 34 34 H 1.08996 * 117.50183 * 0.02562 * 8 6 5 35 35 H 0.97006 * 119.99714 * 5.12016 * 11 9 4 36 36 H 1.09007 * 109.47332 * 299.99961 * 12 11 9 37 37 H 1.08992 * 109.47555 * 60.00380 * 12 11 9 38 38 H 0.96998 * 120.00097 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8102 -1.9158 -1.0628 6 6 1.8770 -3.1281 -1.0561 7 6 1.8333 -3.9792 0.2146 8 6 2.5214 -4.5157 -1.0423 9 6 1.7389 -0.1987 -2.4195 10 8 1.0047 0.7635 -2.5347 11 7 2.2736 -0.7734 -3.5152 12 6 2.0617 -0.1730 -4.8345 13 6 2.7580 -1.0032 -5.8820 14 1 3.3042 -1.8892 -5.5936 15 6 2.6988 -0.6310 -7.2082 16 7 2.0341 0.4481 -7.5593 17 14 3.5625 -1.6597 -8.5064 18 1 3.0088 -3.0376 -8.4952 19 1 3.3476 -1.0512 -9.8438 20 1 5.0172 -1.7084 -8.2122 21 1 -0.3633 -1.0262 0.0546 22 1 -0.3633 0.5604 0.8614 23 1 -0.3633 0.4659 -0.9160 24 1 1.8933 -0.5139 0.8899 25 1 1.5994 1.9837 -0.8372 26 1 1.7584 1.9274 0.9347 27 1 3.1256 1.4440 -0.0974 28 1 3.5021 -1.9945 -1.9014 29 1 3.3726 -1.8851 -0.1294 30 1 0.9487 -3.0099 -1.6152 31 1 2.4698 -3.6756 1.0457 32 1 0.8762 -4.4210 0.4918 33 1 2.0169 -5.3105 -1.5918 34 1 3.6103 -4.5650 -1.0375 35 1 2.7987 -1.5845 -3.4300 36 1 0.9938 -0.1375 -5.0504 37 1 2.4679 0.8384 -4.8430 38 1 1.9921 0.7097 -8.4924 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894484228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:27 Heat of formation + Delta-G solvation = -29.902567 kcal Electronic energy + Delta-G solvation = -17823.243633 eV Core-core repulsion = 15086.725703 eV Total energy + Delta-G solvation = -2736.517931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.33352 -38.43245 -36.97616 -35.88450 -34.56448 -32.76112 -29.15476 -28.02334 -27.53445 -24.96468 -23.19887 -22.84023 -21.68329 -20.80678 -18.95689 -18.05222 -17.45010 -16.55885 -16.51927 -16.13359 -15.48622 -15.20671 -15.02464 -14.42423 -14.24532 -13.94330 -13.91975 -13.72804 -12.96901 -12.87291 -12.85660 -12.71428 -12.56519 -12.29649 -12.21022 -12.05627 -12.01678 -11.49077 -11.30554 -10.82010 -10.77485 -10.67393 -9.93375 -9.35811 -8.27746 -6.44462 1.42485 1.47301 1.55299 1.85572 2.29969 2.38945 2.95187 3.06786 3.21648 3.85454 4.02312 4.05484 4.10713 4.28138 4.33301 4.42411 4.56221 4.76887 4.81222 4.85079 4.87699 4.92084 5.02218 5.08236 5.09311 5.28528 5.29966 5.33250 5.36487 5.44797 5.49586 5.76097 5.86724 5.92240 6.19986 6.67382 7.24945 7.28427 7.80989 8.84474 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022772 B = 0.006607 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.288005 B = 4236.641311 C = 5182.411179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.161 3.839 3 C -0.164 4.164 4 N -0.621 5.621 5 C 0.141 3.859 6 C -0.190 4.190 7 C -0.159 4.159 8 C -0.171 4.171 9 C 0.692 3.308 10 O -0.634 6.634 11 N -0.728 5.728 12 C 0.288 3.712 13 C -0.555 4.555 14 H 0.080 0.920 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.985 3.015 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.261 1.261 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.036 0.964 24 H 0.122 0.878 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.400 0.600 36 H -0.019 1.019 37 H -0.017 1.017 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 -9.215 17.820 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.059 3.941 3 C -0.222 4.222 4 N -0.358 5.358 5 C 0.018 3.982 6 C -0.210 4.210 7 C -0.196 4.196 8 C -0.208 4.208 9 C 0.394 3.606 10 O -0.517 6.517 11 N -0.383 5.383 12 C 0.165 3.835 13 C -0.593 4.593 14 H 0.098 0.902 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.808 3.192 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.185 1.185 21 H 0.073 0.927 22 H 0.100 0.900 23 H 0.056 0.944 24 H 0.140 0.860 25 H 0.056 0.944 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.236 0.764 36 H -0.001 1.001 37 H 0.001 0.999 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.918 -8.387 17.586 19.701 hybrid contribution 0.061 -0.289 -1.195 1.231 sum 2.979 -8.676 16.391 18.783 Atomic orbital electron populations 1.22157 0.95930 1.01708 1.02273 1.21031 0.94054 0.92853 0.86193 1.22175 1.00683 0.96822 1.02563 1.47340 1.57237 1.27625 1.03565 1.21281 0.91844 0.81059 1.03992 1.22698 1.01302 0.92800 1.04228 1.23097 1.02764 1.02281 0.91438 1.23031 1.01061 0.95102 1.01630 1.16310 0.80392 0.82480 0.81455 1.90778 1.42678 1.31928 1.86274 1.45515 1.56105 1.30456 1.06205 1.18333 0.94181 0.92403 0.78582 1.21554 1.34111 1.11511 0.92139 0.90154 1.26063 0.95832 0.96398 1.01197 1.70141 1.42259 1.25927 1.18620 0.85209 0.79050 0.78401 0.76566 1.18724 1.20959 1.18523 0.92716 0.90002 0.94439 0.86042 0.94427 0.89445 0.92919 0.90890 0.86940 0.90706 0.86732 0.88866 0.88984 0.87108 0.76356 1.00079 0.99881 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 9.20 71.98 0.66 -3.84 16 2 C 0.16 4.16 3.28 44.99 0.15 4.31 16 3 C -0.16 -4.54 8.99 71.98 0.65 -3.89 16 4 N -0.62 -19.26 2.42 -815.72 -1.98 -21.24 16 5 C 0.14 3.21 5.51 86.38 0.48 3.69 16 6 C -0.19 -4.18 6.01 -10.79 -0.06 -4.25 16 7 C -0.16 -2.46 10.18 30.60 0.31 -2.15 16 8 C -0.17 -2.94 10.25 30.60 0.31 -2.63 16 9 C 0.69 30.26 7.68 179.05 1.37 31.64 16 10 O -0.63 -33.16 12.62 -3.98 -0.05 -33.21 16 11 N -0.73 -33.39 5.42 -482.29 -2.61 -36.00 16 12 C 0.29 16.63 5.43 85.64 0.47 17.10 16 13 C -0.56 -31.23 9.28 25.60 0.24 -31.00 16 14 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 15 C 0.00 0.26 5.46 84.65 0.46 0.73 16 16 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 17 Si 0.99 43.03 29.54 68.60 2.03 45.05 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.04 1.40 6.12 -2.39 -0.01 1.38 16 24 H 0.12 2.12 7.78 -2.39 -0.02 2.10 16 25 H 0.04 1.38 6.32 -2.39 -0.02 1.37 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.77 6.24 -2.39 -0.01 1.75 16 29 H 0.11 1.77 7.63 -2.38 -0.02 1.75 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.11 1.30 8.03 -2.39 -0.02 1.29 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.40 15.76 6.02 -92.70 -0.56 15.20 16 36 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 37 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 38 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -73.40 311.33 3.18 -70.22 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.48 Total: 22.57 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 5.03 Total: 9.71 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -4.30 Total: -114.34 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.05 Total: -33.21 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -73.40 3.18 -70.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894484228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.316 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds