Wall clock time and date at job start Sun Mar 29 2020 23:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.90779 * 2 1 4 4 C 1.53990 * 109.91707 * 238.89431 * 2 1 3 5 5 H 1.09005 * 110.30685 * 120.51171 * 4 2 1 6 6 N 1.46505 * 110.39515 * 358.38473 * 4 2 1 7 7 C 1.34769 * 119.99928 * 157.77991 * 6 4 2 8 8 O 1.21287 * 120.00528 * 359.97438 * 7 6 4 9 9 C 1.50698 * 120.00104 * 180.02562 * 7 6 4 10 10 C 1.53002 * 109.47576 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.47284 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99482 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99729 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00178 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99657 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47294 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47143 * 120.00137 * 15 13 11 18 18 H 1.48506 * 109.46929 * 240.00144 * 15 13 11 19 19 C 1.54597 * 105.14143 * 239.42559 * 4 2 1 20 20 C 1.54934 * 102.92105 * 338.04435 * 19 4 2 21 21 N 1.47907 * 109.91478 * 121.30763 * 2 1 3 22 22 C 1.46900 * 110.99845 * 265.19933 * 21 2 1 23 23 H 1.09001 * 109.47529 * 181.09772 * 1 2 3 24 24 H 1.08997 * 109.47664 * 301.10469 * 1 2 3 25 25 H 1.09002 * 109.47196 * 61.10647 * 1 2 3 26 26 H 0.96998 * 119.99854 * 337.78053 * 6 4 2 27 27 H 1.09004 * 109.47166 * 299.99913 * 9 7 6 28 28 H 1.09005 * 109.47344 * 59.99305 * 9 7 6 29 29 H 1.08996 * 109.46566 * 299.99767 * 10 9 7 30 30 H 1.09001 * 109.47204 * 59.99721 * 10 9 7 31 31 H 0.96998 * 119.99533 * 179.97438 * 14 13 11 32 32 H 1.09000 * 110.72471 * 96.39833 * 19 4 2 33 33 H 1.09001 * 110.72634 * 219.68854 * 19 4 2 34 34 H 1.09002 * 110.66845 * 155.85307 * 20 19 4 35 35 H 1.08999 * 110.67017 * 278.97874 * 20 19 4 36 36 H 1.08996 * 109.47288 * 59.99884 * 22 21 2 37 37 H 1.09002 * 109.47076 * 179.97438 * 22 21 2 38 38 H 1.09003 * 109.47046 * 299.99439 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0545 -0.7480 -1.2396 5 1 2.6714 -0.0863 -1.8478 6 7 0.9379 -1.2707 -2.0310 7 6 1.1115 -1.5521 -3.3375 8 8 2.1920 -1.3722 -3.8583 9 6 -0.0372 -2.0892 -4.1517 10 6 0.4235 -2.3226 -5.5919 11 6 -0.7251 -2.8603 -6.4059 12 1 -1.6874 -3.0200 -5.9422 13 6 -0.5475 -3.1483 -7.7425 14 7 0.6244 -2.9543 -8.3070 15 14 -1.9711 -3.8155 -8.7514 16 1 -3.1724 -3.9439 -7.8879 17 1 -2.2630 -2.8851 -9.8714 18 1 -1.6093 -5.1486 -9.2967 19 6 2.9058 -1.9106 -0.6795 20 6 3.2680 -1.4199 0.7447 21 7 2.0338 -0.7226 1.1881 22 6 2.3210 0.2082 2.2877 23 1 -0.3634 -1.0275 0.0197 24 1 -0.3634 0.5309 0.8799 25 1 -0.3634 0.4966 -0.8998 26 1 0.0737 -1.4142 -1.6146 27 1 -0.3776 -3.0315 -3.7223 28 1 -0.8560 -1.3697 -4.1438 29 1 0.7641 -1.3805 -6.0215 30 1 1.2420 -3.0424 -5.5994 31 1 0.7494 -3.1573 -9.2472 32 1 2.3212 -2.8295 -0.6339 33 1 3.8052 -2.0536 -1.2785 34 1 3.4887 -2.2642 1.3980 35 1 4.1096 -0.7281 0.7109 36 1 1.4093 0.7389 2.5620 37 1 2.6894 -0.3494 3.1488 38 1 3.0770 0.9255 1.9684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928438433.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:54 Heat of formation + Delta-G solvation = -38.584251 kcal Electronic energy + Delta-G solvation = -17366.659086 eV Core-core repulsion = 14629.764690 eV Total energy + Delta-G solvation = -2736.894397 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.10261 -38.32065 -34.37270 -33.41780 -31.68242 -31.19872 -30.22718 -26.37932 -25.21975 -25.06142 -22.03540 -21.23123 -19.87049 -19.49485 -17.07906 -16.12600 -16.08997 -15.44467 -15.12084 -14.80843 -14.47691 -14.32766 -13.51316 -13.23567 -12.93639 -12.70070 -12.60309 -12.17507 -12.07715 -11.72391 -11.52663 -11.39770 -11.11652 -11.04968 -10.92333 -10.79055 -10.55478 -9.92985 -9.63283 -9.13440 -8.96514 -8.79492 -8.65398 -8.30067 -5.94157 -3.98305 3.29249 3.34044 3.40859 3.44228 3.56002 3.75546 4.35869 4.49493 4.61580 4.90194 5.01476 5.06767 5.19427 5.22110 5.32750 5.40874 5.50247 5.56585 5.57699 5.61019 5.70778 5.78190 6.00282 6.05311 6.11760 6.26651 6.28529 6.64540 6.77020 6.83177 6.93500 7.77246 7.89336 7.95508 8.09785 8.41464 8.83882 9.10776 9.65193 11.16848 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057822 B = 0.004188 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.132241 B = 6684.961182 C = 6949.169281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 H 0.060 0.940 4 C 0.140 3.860 5 H 0.091 0.909 6 N -0.736 5.736 7 C 0.509 3.491 8 O -0.536 6.536 9 C -0.130 4.130 10 C 0.037 3.963 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.134 4.134 20 C 0.035 3.965 21 N -0.517 5.517 22 C 0.016 3.984 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.400 0.600 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 5.684 20.735 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.054 4.054 3 H 0.078 0.922 4 C 0.033 3.967 5 H 0.109 0.891 6 N -0.393 5.393 7 C 0.297 3.703 8 O -0.412 6.412 9 C -0.170 4.170 10 C -0.001 4.001 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.174 4.174 20 C -0.093 4.093 21 N -0.242 5.242 22 C -0.133 4.133 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.238 0.762 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.958 5.441 20.372 21.177 hybrid contribution -0.464 0.197 -0.586 0.773 sum 1.494 5.638 19.786 20.628 Atomic orbital electron populations 1.21733 0.93725 1.02474 1.01904 1.22622 0.96972 0.96218 0.89625 0.92184 1.21627 0.88756 0.95073 0.91196 0.89138 1.46521 1.14061 1.68274 1.10450 1.21590 0.91102 0.76379 0.81189 1.90658 1.27773 1.51730 1.71004 1.21864 0.95133 1.00633 0.99395 1.18900 0.96480 0.97993 0.86709 1.21273 0.97008 1.43459 0.94663 0.92551 1.25031 0.95649 0.95781 0.97978 1.70013 1.22431 1.48414 1.12016 0.86539 0.82579 0.78622 0.80236 1.19741 1.21041 1.21036 1.22949 1.00657 0.99152 0.94612 1.23235 0.91122 0.98474 0.96478 1.64715 1.26865 1.26270 1.06333 1.22515 1.00592 0.95303 0.94846 0.91504 0.92384 0.91504 0.76181 0.90282 0.90303 0.95850 0.95839 0.93041 0.90150 0.90348 0.89807 0.93558 0.91346 0.91243 0.95396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.20 37.16 0.30 -1.00 16 2 C 0.05 0.57 3.08 -66.64 -0.21 0.36 16 3 H 0.06 0.60 7.74 -51.93 -0.40 0.20 16 4 C 0.14 1.83 3.27 -66.57 -0.22 1.61 16 5 H 0.09 1.35 7.64 -51.93 -0.40 0.95 16 6 N -0.74 -10.61 4.56 -52.49 -0.24 -10.85 16 7 C 0.51 9.88 7.82 -10.99 -0.09 9.80 16 8 O -0.54 -12.70 15.68 5.55 0.09 -12.62 16 9 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 10 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 11 C -0.53 -15.04 9.11 -34.44 -0.31 -15.36 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 15 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.13 -1.65 6.77 -24.87 -0.17 -1.82 16 20 C 0.03 0.34 6.56 -1.90 -0.01 0.33 16 21 N -0.52 -5.16 5.18 -230.79 -1.20 -6.35 16 22 C 0.02 0.13 9.40 60.06 0.56 0.69 16 23 H 0.07 0.63 6.89 -51.93 -0.36 0.27 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.63 7.77 -51.93 -0.40 0.22 16 26 H 0.40 4.79 5.78 -40.82 -0.24 4.55 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.43 7.96 -51.93 -0.41 0.02 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.03 0.21 8.01 -51.93 -0.42 -0.21 16 LS Contribution 308.24 15.07 4.65 4.65 Total: -1.00 -33.42 308.24 -7.88 -41.30 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.39 Total: -0.24 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.51 Total: -5.76 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.70 Total: -44.10 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.42 -7.88 -41.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928438433.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.715 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds