Wall clock time and date at job start Sun Mar 29 2020 23:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.36989 * 2 1 4 4 C 1.54382 * 110.41276 * 122.35224 * 2 1 3 5 5 H 1.09002 * 110.40960 * 261.57052 * 4 2 1 6 6 N 1.46504 * 110.32111 * 23.73324 * 4 2 1 7 7 C 1.34775 * 119.99806 * 202.08891 * 6 4 2 8 8 O 1.21283 * 119.99909 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00172 * 180.02562 * 7 6 4 10 10 C 1.52996 * 109.47420 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47420 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99921 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00263 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00196 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00244 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46908 * 89.99609 * 15 13 11 17 17 H 1.48495 * 109.47205 * 209.99807 * 15 13 11 18 18 H 1.48497 * 109.46597 * 329.99791 * 15 13 11 19 19 C 1.54257 * 105.06052 * 142.62998 * 4 2 1 20 20 C 1.54379 * 105.06256 * 0.02562 * 19 4 2 21 21 N 1.48562 * 104.69842 * 336.08765 * 20 19 4 22 22 C 1.46894 * 111.00344 * 159.09785 * 21 20 19 23 23 H 1.09006 * 109.46845 * 297.64725 * 1 2 3 24 24 H 1.08995 * 109.47012 * 57.64202 * 1 2 3 25 25 H 1.08998 * 109.47036 * 177.65238 * 1 2 3 26 26 H 0.97000 * 119.99926 * 22.09712 * 6 4 2 27 27 H 1.09001 * 109.46833 * 299.99922 * 9 7 6 28 28 H 1.08999 * 109.46753 * 60.00026 * 9 7 6 29 29 H 1.09001 * 109.46768 * 299.99611 * 10 9 7 30 30 H 1.08997 * 109.47166 * 59.99359 * 10 9 7 31 31 H 0.97001 * 120.00572 * 179.97438 * 14 13 11 32 32 H 1.08998 * 110.32238 * 241.10511 * 19 4 2 33 33 H 1.09002 * 110.32308 * 118.90057 * 19 4 2 34 34 H 1.09002 * 110.41258 * 94.92615 * 20 19 4 35 35 H 1.09002 * 110.41328 * 217.24846 * 20 19 4 36 36 H 1.09007 * 109.47069 * 59.87301 * 22 21 20 37 37 H 1.08995 * 109.47381 * 179.87413 * 22 21 20 38 38 H 1.09000 * 109.47076 * 299.87817 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0685 -0.7743 1.2223 5 1 2.3414 -0.0832 2.0199 6 7 1.0672 -1.7313 1.6998 7 6 1.1171 -2.1818 2.9690 8 8 1.9906 -1.7945 3.7160 9 6 0.0876 -3.1666 3.4601 10 6 0.3694 -3.5119 4.9237 11 6 -0.6597 -4.4972 5.4146 12 1 -1.4374 -4.8424 4.7493 13 6 -0.6086 -4.9582 6.7129 14 7 0.3386 -4.5384 7.5230 15 14 -1.8848 -6.1791 7.3217 16 1 -1.4041 -7.5621 7.0744 17 1 -2.1022 -5.9833 8.7775 18 1 -3.1625 -5.9621 6.5967 19 6 3.3177 -1.5181 0.7070 20 6 3.4295 -1.1302 -0.7831 21 7 2.0492 -0.7476 -1.1775 22 6 2.0601 0.0975 -2.3790 23 1 -0.3633 0.4769 0.9104 24 1 -0.3633 0.5500 -0.8681 25 1 -0.3633 -1.0268 -0.0421 26 1 0.3685 -2.0407 1.1024 27 1 -0.9058 -2.7260 3.3759 28 1 0.1353 -4.0732 2.8568 29 1 1.3629 -3.9524 5.0082 30 1 0.3215 -2.6052 5.5266 31 1 0.3744 -4.8623 8.4366 32 1 3.1860 -2.5952 0.8093 33 1 4.2042 -1.1910 1.2505 34 1 4.1079 -0.2860 -0.9064 35 1 3.7714 -1.9808 -1.3728 36 1 2.5225 -0.4473 -3.2022 37 1 1.0370 0.3612 -2.6470 38 1 2.6290 1.0055 -2.1793 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928438434.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:56 Heat of formation + Delta-G solvation = -41.097036 kcal Electronic energy + Delta-G solvation = -17396.761126 eV Core-core repulsion = 14659.757767 eV Total energy + Delta-G solvation = -2737.003359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.05253 -38.27254 -34.23319 -33.39831 -31.72905 -31.20584 -30.23592 -26.31054 -25.20212 -25.12394 -21.99194 -21.07996 -19.88416 -19.57689 -17.02342 -16.10880 -15.99420 -15.37785 -15.10999 -14.90702 -14.46690 -14.32305 -13.62596 -13.10202 -12.94216 -12.77809 -12.58647 -12.15315 -12.00992 -11.67242 -11.52058 -11.35781 -11.10442 -10.99252 -10.89578 -10.82296 -10.56126 -9.90761 -9.61490 -9.12440 -8.94752 -8.85002 -8.62316 -8.28504 -5.92833 -3.97029 3.32292 3.35735 3.41489 3.44213 3.63550 3.73877 4.35201 4.50571 4.59609 4.92983 4.99194 5.06013 5.20096 5.21640 5.33309 5.42055 5.51329 5.57272 5.59192 5.62282 5.69628 5.79973 5.98100 6.08008 6.14205 6.29122 6.31208 6.59440 6.75923 6.89320 6.95847 7.78291 7.91017 8.00700 8.11266 8.42964 8.87200 9.11994 9.66365 11.18133 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052026 B = 0.004273 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.065257 B = 6551.769991 C = 6769.401482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 H 0.062 0.938 4 C 0.147 3.853 5 H 0.092 0.908 6 N -0.732 5.732 7 C 0.509 3.491 8 O -0.537 6.537 9 C -0.130 4.130 10 C 0.037 3.963 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.136 4.136 20 C 0.033 3.967 21 N -0.511 5.511 22 C 0.014 3.986 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.400 0.600 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 9.372 -19.470 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.059 4.059 3 H 0.080 0.920 4 C 0.041 3.959 5 H 0.110 0.890 6 N -0.388 5.388 7 C 0.298 3.702 8 O -0.413 6.413 9 C -0.170 4.170 10 C 0.000 4.000 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.175 4.175 20 C -0.095 4.095 21 N -0.236 5.236 22 C -0.135 4.135 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.237 0.763 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.924 9.174 -18.865 21.180 hybrid contribution -0.398 -0.067 0.142 0.428 sum 2.526 9.107 -18.722 20.973 Atomic orbital electron populations 1.21664 0.93310 1.02590 1.01813 1.23002 0.96859 0.95866 0.90170 0.92047 1.21495 0.88350 0.91096 0.95008 0.89020 1.46388 1.32159 1.46733 1.13474 1.21569 0.86498 0.81657 0.80509 1.90657 1.37185 1.58059 1.55394 1.21856 0.96372 0.96375 1.02403 1.18889 0.97288 0.96914 0.86942 1.21239 1.12731 1.25718 0.96766 0.92615 1.25024 0.95778 0.96645 0.96943 1.70001 1.32731 1.43866 1.06311 0.86596 0.81868 0.81548 0.77968 1.20692 1.21254 1.19884 1.22793 0.98395 1.02162 0.94195 1.23125 0.89650 1.00242 0.96517 1.65436 1.18271 1.36997 1.02877 1.22504 1.02013 0.95473 0.93464 0.91601 0.92639 0.91484 0.76319 0.90333 0.90312 0.95869 0.95858 0.92994 0.90156 0.90704 0.93838 0.90012 0.91312 0.91203 0.95462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.69 37.16 0.32 -0.95 16 2 C 0.05 0.51 2.85 -65.92 -0.19 0.32 16 3 H 0.06 0.59 7.91 -51.93 -0.41 0.18 16 4 C 0.15 1.91 3.22 -66.55 -0.21 1.70 16 5 H 0.09 1.34 7.64 -51.93 -0.40 0.95 16 6 N -0.73 -10.62 4.45 -52.46 -0.23 -10.85 16 7 C 0.51 9.92 7.82 -10.99 -0.09 9.83 16 8 O -0.54 -12.74 15.68 5.55 0.09 -12.66 16 9 C -0.13 -2.69 5.64 -27.89 -0.16 -2.85 16 10 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 11 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 15 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.14 -1.66 6.78 -25.35 -0.17 -1.83 16 20 C 0.03 0.32 6.48 -2.18 -0.01 0.31 16 21 N -0.51 -5.08 5.35 -230.12 -1.23 -6.31 16 22 C 0.01 0.11 9.43 60.06 0.57 0.68 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 25 H 0.07 0.64 6.22 -51.93 -0.32 0.32 16 26 H 0.40 4.95 6.38 -40.82 -0.26 4.69 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.39 7.97 -51.93 -0.41 -0.03 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.07 0.50 7.64 -51.93 -0.40 0.10 16 38 H 0.03 0.20 7.98 -51.93 -0.41 -0.22 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -33.37 307.86 -7.84 -41.21 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.35 Total: -0.15 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.47 Total: -5.74 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.73 Total: -44.14 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.37 -7.84 -41.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928438434.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.113 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds