Wall clock time and date at job start Sun Mar 29 2020 23:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.87839 * 2 1 4 4 C 1.54318 * 109.88964 * 238.80595 * 2 1 3 5 5 H 1.09000 * 110.70517 * 336.68948 * 4 2 1 6 6 N 1.46497 * 110.70853 * 99.92538 * 4 2 1 7 7 C 1.34778 * 120.00032 * 205.00276 * 6 4 2 8 8 O 1.21274 * 120.00200 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00047 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47411 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47190 * 179.97438 * 10 9 7 12 12 H 1.07991 * 120.00239 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99856 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99867 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99947 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47283 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46949 * 120.00327 * 15 13 11 18 18 H 1.48505 * 109.47245 * 240.00101 * 15 13 11 19 19 C 1.55137 * 103.01973 * 218.30984 * 4 2 1 20 20 C 1.54906 * 101.65496 * 35.64963 * 19 4 2 21 21 N 1.47440 * 109.89276 * 121.03617 * 2 1 3 22 22 C 1.46902 * 110.99723 * 356.14750 * 21 2 1 23 23 H 1.09002 * 109.47153 * 300.41818 * 1 2 3 24 24 H 1.09001 * 109.46832 * 180.42009 * 1 2 3 25 25 H 1.09004 * 109.47261 * 60.41990 * 1 2 3 26 26 H 0.97000 * 120.00362 * 24.99997 * 6 4 2 27 27 H 1.09005 * 109.47242 * 299.99803 * 9 7 6 28 28 H 1.09004 * 109.47503 * 59.99159 * 9 7 6 29 29 H 1.08994 * 109.47259 * 299.99840 * 10 9 7 30 30 H 1.08998 * 109.46839 * 59.99751 * 10 9 7 31 31 H 0.97008 * 119.99885 * 179.97438 * 14 13 11 32 32 H 1.09001 * 110.98975 * 277.55506 * 19 4 2 33 33 H 1.09002 * 111.02442 * 153.75813 * 19 4 2 34 34 H 1.08994 * 110.37732 * 204.10162 * 20 19 4 35 35 H 1.09001 * 110.46636 * 81.80968 * 20 19 4 36 36 H 1.08996 * 109.47213 * 60.00249 * 22 21 2 37 37 H 1.09000 * 109.46920 * 180.02562 * 22 21 2 38 38 H 1.09004 * 109.46797 * 300.00106 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0550 -0.7516 -1.2413 5 1 1.3056 -1.4494 -1.6149 6 7 2.4533 0.1924 -2.2884 7 6 2.4556 -0.1948 -3.5794 8 8 2.1283 -1.3247 -3.8742 9 6 2.8659 0.7761 -4.6565 10 6 2.7815 0.0896 -6.0211 11 6 3.1912 1.0607 -7.0982 12 1 3.4831 2.0667 -6.8357 13 6 3.1945 0.6644 -8.4188 14 7 2.8395 -0.5610 -8.7385 15 14 3.7030 1.8678 -9.7539 16 1 4.0547 3.1720 -9.1369 17 1 4.8812 1.3312 -10.4814 18 1 2.5781 2.0568 -10.7047 19 6 3.2892 -1.5144 -0.6920 20 6 2.8190 -1.8822 0.7374 21 7 2.0317 -0.7148 1.1879 22 6 0.9240 -1.1311 2.0585 23 1 -0.3633 0.5203 0.8862 24 1 -0.3633 -1.0277 0.0075 25 1 -0.3634 0.5073 -0.8938 26 1 2.7154 1.0960 -2.0527 27 1 2.1995 1.6386 -4.6414 28 1 3.8898 1.1051 -4.4783 29 1 3.4482 -0.7725 -6.0360 30 1 1.7578 -0.2396 -6.1995 31 1 2.8414 -0.8397 -9.6677 32 1 4.1658 -0.8673 -0.6603 33 1 3.4888 -2.4102 -1.2800 34 1 3.6772 -2.0363 1.3913 35 1 2.1945 -2.7753 0.7152 36 1 0.2579 -1.7945 1.5069 37 1 1.3221 -1.6556 2.9272 38 1 0.3704 -0.2517 2.3876 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928438436.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:59 Heat of formation + Delta-G solvation = -66.808397 kcal Electronic energy + Delta-G solvation = -17312.499652 eV Core-core repulsion = 14574.381364 eV Total energy + Delta-G solvation = -2738.118288 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26472 -39.83840 -35.68132 -35.42791 -33.15314 -32.67663 -31.32373 -27.89419 -26.66990 -25.95167 -23.71513 -22.17085 -21.51783 -20.50656 -18.81329 -17.78643 -17.52599 -16.56532 -16.51552 -16.35396 -16.08087 -15.27454 -14.84817 -14.73244 -14.28933 -14.15373 -13.64994 -13.35834 -13.24085 -13.13147 -12.85516 -12.71806 -12.45210 -12.36211 -12.21805 -12.11203 -11.92581 -11.75265 -11.62710 -11.28405 -10.74149 -10.57995 -10.05035 -9.32322 -8.18201 -6.32205 1.42526 1.43906 1.57312 1.69662 2.18865 2.44386 2.97878 3.14975 3.51242 3.68581 3.88660 4.02185 4.19993 4.25613 4.31757 4.49879 4.52809 4.55798 4.57208 4.61137 4.68082 4.88265 4.93044 4.99335 5.02556 5.11273 5.13802 5.21974 5.48618 5.57104 5.63117 5.85538 5.91486 6.04680 6.17668 6.60704 6.86644 7.34373 7.38388 8.94716 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060101 B = 0.004042 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.771505 B = 6925.671636 C = 7031.770220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.070 3.930 3 H 0.103 0.897 4 C 0.123 3.877 5 H 0.067 0.933 6 N -0.707 5.707 7 C 0.513 3.487 8 O -0.590 6.590 9 C -0.119 4.119 10 C 0.041 3.959 11 C -0.542 4.542 12 H 0.077 0.923 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 0.975 3.025 16 H -0.252 1.252 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.142 4.142 20 C 0.047 3.953 21 N -0.530 5.530 22 C 0.012 3.988 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.417 0.583 27 H 0.105 0.895 28 H 0.105 0.895 29 H -0.019 1.019 30 H -0.018 1.018 31 H 0.262 0.738 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 3.664 22.505 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.039 4.039 3 H 0.121 0.879 4 C 0.017 3.983 5 H 0.085 0.915 6 N -0.361 5.361 7 C 0.302 3.698 8 O -0.469 6.469 9 C -0.159 4.159 10 C 0.004 3.996 11 C -0.580 4.580 12 H 0.095 0.905 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.798 3.202 16 H -0.175 1.175 17 H -0.207 1.207 18 H -0.206 1.206 19 C -0.181 4.181 20 C -0.081 4.081 21 N -0.255 5.255 22 C -0.136 4.136 23 H 0.104 0.896 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.255 0.745 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.000 1.000 30 H 0.000 1.000 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.857 3.094 22.487 22.775 hybrid contribution -0.315 -0.343 -1.498 1.569 sum -2.172 2.751 20.989 21.280 Atomic orbital electron populations 1.22343 0.94551 1.02287 1.03263 1.22620 0.94882 0.99140 0.87258 0.87928 1.22264 0.96644 0.91678 0.87727 0.91458 1.45823 1.68915 1.16521 1.04805 1.21355 0.75626 0.88439 0.84370 1.90649 1.49644 1.23328 1.83309 1.21639 1.03804 0.97919 0.92500 1.18695 0.94740 0.94696 0.91505 1.21752 1.45012 0.99038 0.92167 0.90533 1.26152 0.95230 0.97157 1.01994 1.70191 1.49324 1.19668 1.18663 0.85260 0.77671 0.79096 0.78128 1.17543 1.20663 1.20635 1.23081 0.98404 1.00515 0.96096 1.23021 0.98409 0.92084 0.94560 1.63846 1.22700 1.23195 1.15718 1.22704 0.93023 1.01090 0.96773 0.89644 0.92690 0.92441 0.74503 0.87643 0.87702 1.00013 1.00002 0.92881 0.89667 0.92175 0.88533 0.93247 0.94998 0.90582 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 7.84 71.98 0.56 -2.26 16 2 C 0.07 1.30 3.77 45.26 0.17 1.47 16 3 H 0.10 1.71 7.72 -2.38 -0.02 1.69 16 4 C 0.12 3.12 2.84 46.17 0.13 3.25 16 5 H 0.07 2.11 7.26 -2.39 -0.02 2.09 16 6 N -0.71 -19.15 5.18 -436.97 -2.26 -21.41 16 7 C 0.51 19.93 7.83 87.66 0.69 20.62 16 8 O -0.59 -29.27 15.63 -3.01 -0.05 -29.32 16 9 C -0.12 -4.77 5.64 29.85 0.17 -4.60 16 10 C 0.04 2.32 4.26 29.85 0.13 2.45 16 11 C -0.54 -30.99 9.11 25.60 0.23 -30.75 16 12 H 0.08 3.98 7.74 -2.92 -0.02 3.96 16 13 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 14 N -0.94 -59.94 13.29 21.45 0.28 -59.66 16 15 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 16 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 C -0.14 -3.32 6.76 31.98 0.22 -3.10 16 20 C 0.05 0.87 6.73 86.77 0.58 1.45 16 21 N -0.53 -9.37 5.44 -886.56 -4.83 -14.20 16 22 C 0.01 0.17 8.29 127.69 1.06 1.22 16 23 H 0.08 1.11 6.67 -2.39 -0.02 1.10 16 24 H 0.05 0.99 6.64 -2.39 -0.02 0.97 16 25 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.42 8.21 8.37 -92.71 -0.78 7.44 16 27 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 28 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 29 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 30 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 31 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 0.90 7.78 -2.39 -0.02 0.89 16 36 H 0.03 0.46 6.44 -2.39 -0.02 0.44 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.96 6.74 -2.39 -0.02 0.94 16 Total: -1.00 -75.50 305.79 -0.16 -75.66 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.26 Total: 12.70 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.40 Total: -10.26 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -6.80 Total: -95.26 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.32 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -75.50 -0.16 -75.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928438436.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.852 kcal (2) G-P(sol) polarization free energy of solvation -75.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds