Wall clock time and date at job start Sun Mar 29 2020 23:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.37914 * 2 1 4 4 N 1.46008 * 109.37958 * 240.34671 * 2 1 3 5 5 C 1.33713 * 122.93214 * 221.66654 * 4 2 1 6 6 O 1.21285 * 118.62657 * 181.68658 * 5 4 2 7 7 C 1.50256 * 122.75065 * 1.68400 * 5 4 2 8 8 H 1.08991 * 109.38713 * 222.64494 * 7 5 4 9 9 C 1.53005 * 109.30106 * 102.89974 * 7 5 4 10 10 N 1.46902 * 109.97701 * 342.80433 * 7 5 4 11 11 C 1.46901 * 111.00175 * 173.66774 * 10 7 5 12 12 C 1.53001 * 109.47595 * 64.28997 * 11 10 7 13 13 C 1.50697 * 109.47243 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99841 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99976 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99958 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47190 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47332 * 120.00159 * 17 15 13 20 20 H 1.48498 * 109.46780 * 240.00280 * 17 15 13 21 21 C 1.47184 * 110.17941 * 50.29201 * 10 7 5 22 22 H 1.09007 * 109.59093 * 50.77840 * 21 10 7 23 23 C 1.53003 * 109.59438 * 171.07587 * 21 10 7 24 24 H 1.08999 * 109.47271 * 300.23736 * 1 2 3 25 25 H 1.09008 * 109.47070 * 60.23423 * 1 2 3 26 26 H 1.09003 * 109.47202 * 180.23401 * 1 2 3 27 27 H 0.96999 * 118.53450 * 41.66578 * 4 2 1 28 28 H 1.08996 * 109.47232 * 299.74399 * 9 7 5 29 29 H 1.08995 * 109.46965 * 59.74863 * 9 7 5 30 30 H 1.08996 * 109.46953 * 179.74239 * 9 7 5 31 31 H 1.09001 * 109.47215 * 184.29639 * 11 10 7 32 32 H 1.09000 * 109.46898 * 304.29276 * 11 10 7 33 33 H 1.08997 * 109.46881 * 300.00613 * 12 11 10 34 34 H 1.09000 * 109.46770 * 60.00201 * 12 11 10 35 35 H 0.97001 * 119.99982 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.46741 * 53.31388 * 23 21 10 37 37 H 1.09008 * 109.46557 * 173.30826 * 23 21 10 38 38 H 1.09000 * 109.47309 * 293.30905 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8916 1.0282 0.0000 4 7 2.0144 -0.6814 -1.1970 5 6 3.0465 -1.5315 -1.1820 6 8 3.4034 -2.0306 -2.2282 7 6 3.7828 -1.8941 0.0766 8 1 4.8545 -1.9047 -0.1215 9 6 3.3381 -3.2827 0.5404 10 7 3.4911 -0.9119 1.1293 11 6 4.0776 -1.3244 2.4114 12 6 5.6028 -1.3437 2.2920 13 6 6.2044 -1.7675 3.6070 14 1 5.5630 -1.9995 4.4444 15 6 7.5736 -1.8581 3.7414 16 7 8.3546 -1.5752 2.7219 17 14 8.3194 -2.3828 5.3718 18 1 7.2343 -2.6421 6.3519 19 1 9.1164 -3.6203 5.1761 20 1 9.2003 -1.3024 5.8836 21 6 2.0375 -0.7165 1.2528 22 1 1.5451 -1.6846 1.3450 23 6 1.7370 0.1319 2.4901 24 1 -0.3634 0.5175 0.8878 25 1 -0.3634 0.5102 -0.8921 26 1 -0.3634 -1.0277 0.0042 27 1 1.5676 -0.5099 -2.0407 28 1 2.2664 -3.2736 0.7389 29 1 3.5573 -4.0132 -0.2382 30 1 3.8740 -3.5504 1.4510 31 1 3.7829 -0.6200 3.1893 32 1 3.7208 -2.3214 2.6701 33 1 5.8974 -2.0482 1.5142 34 1 5.9596 -0.3468 2.0333 35 1 9.3179 -1.6385 2.8165 36 1 2.3197 1.0522 2.4498 37 1 0.6747 0.3751 2.5146 38 1 2.0025 -0.4273 3.3873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930830926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:16 Heat of formation + Delta-G solvation = -37.247849 kcal Electronic energy + Delta-G solvation = -18258.316504 eV Core-core repulsion = 15521.480058 eV Total energy + Delta-G solvation = -2736.836446 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60391 -37.66478 -35.77871 -33.04660 -32.44272 -30.35412 -29.47963 -27.53320 -25.32199 -24.32501 -22.90583 -21.47227 -20.15529 -18.16598 -17.04266 -16.99359 -16.23121 -15.26837 -14.71167 -14.58508 -14.47312 -13.95111 -13.82052 -13.31817 -12.70948 -12.61238 -12.51668 -12.12012 -11.92566 -11.90525 -11.62921 -11.35008 -11.12500 -10.95246 -10.89360 -10.77090 -10.52986 -9.85231 -9.58260 -9.34578 -9.11844 -8.98476 -8.35555 -7.89440 -6.00935 -4.04030 2.84954 3.30312 3.36757 3.38142 3.41011 4.09075 4.46743 4.61957 4.66131 4.97616 5.12317 5.27515 5.32443 5.35590 5.37932 5.44639 5.60582 5.66111 5.78820 5.90315 5.94650 6.01392 6.15147 6.17549 6.28048 6.37486 6.54048 6.84889 6.93985 7.26347 7.37225 7.46183 7.72129 7.83601 8.03747 8.39178 8.40794 9.03379 9.60127 11.10321 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.006327 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.321557 B = 4424.489687 C = 4941.290566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.081 0.919 4 N -0.717 5.717 5 C 0.533 3.467 6 O -0.558 6.558 7 C 0.067 3.933 8 H 0.127 0.873 9 C -0.177 4.177 10 N -0.522 5.522 11 C 0.052 3.948 12 C 0.026 3.974 13 C -0.522 4.522 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.060 3.940 22 H 0.050 0.950 23 C -0.146 4.146 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.394 0.606 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.017 0.983 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.135 2.810 -2.859 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.099 0.901 4 N -0.369 5.369 5 C 0.320 3.680 6 O -0.436 6.436 7 C -0.045 4.045 8 H 0.144 0.856 9 C -0.236 4.236 10 N -0.247 5.247 11 C -0.074 4.074 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.049 4.049 22 H 0.068 0.932 23 C -0.204 4.204 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.229 0.771 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.429 2.975 -3.379 16.072 hybrid contribution -0.030 -0.911 0.798 1.211 sum -15.459 2.065 -2.581 15.808 Atomic orbital electron populations 1.22206 0.94514 1.02703 1.02819 1.21086 0.93557 0.96921 0.84389 0.90069 1.45721 1.33728 1.45945 1.11532 1.20339 0.79317 0.77397 0.90964 1.90719 1.66215 1.53476 1.33171 1.21861 1.02205 0.91450 0.88957 0.85556 1.22305 1.01093 0.96567 1.03633 1.62950 1.09020 1.44532 1.08235 1.22589 0.99091 0.97915 0.87799 1.19114 0.87102 0.97950 0.96988 1.21177 0.91553 1.45922 0.97442 0.92727 1.24990 0.97363 0.95436 0.96456 1.69980 1.04021 1.48824 1.30175 0.86558 0.79252 0.78256 0.84043 1.19794 1.21042 1.21011 1.22007 0.90233 0.98213 0.94468 0.93242 1.21929 1.01099 1.00779 0.96585 0.90617 0.92027 0.92138 0.77099 0.93004 0.91456 0.89543 0.90883 0.95109 0.96451 0.95670 0.92993 0.91136 0.92176 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.26 37.15 0.34 -0.97 16 2 C 0.15 1.65 3.32 -68.21 -0.23 1.42 16 3 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 4 N -0.72 -9.60 5.18 -54.55 -0.28 -9.88 16 5 C 0.53 9.19 7.05 -11.67 -0.08 9.10 16 6 O -0.56 -11.38 17.82 5.55 0.10 -11.28 16 7 C 0.07 1.19 2.49 -69.08 -0.17 1.02 16 8 H 0.13 2.60 6.73 -51.93 -0.35 2.25 16 9 C -0.18 -2.86 8.41 37.16 0.31 -2.55 16 10 N -0.52 -8.92 4.59 -220.14 -1.01 -9.93 16 11 C 0.05 1.01 3.97 -3.82 -0.02 1.00 16 12 C 0.03 0.65 4.85 -27.88 -0.14 0.51 16 13 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.06 0.79 1.92 -67.57 -0.13 0.66 16 22 H 0.05 0.66 6.20 -51.92 -0.32 0.33 16 23 C -0.15 -1.67 8.19 37.16 0.30 -1.36 16 24 H 0.07 0.51 6.63 -51.93 -0.34 0.17 16 25 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.39 4.56 8.74 -40.82 -0.36 4.20 16 28 H 0.05 0.74 6.46 -51.93 -0.34 0.41 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.09 1.49 6.21 -51.93 -0.32 1.17 16 31 H 0.07 1.37 5.90 -51.93 -0.31 1.07 16 32 H 0.03 0.59 5.94 -51.93 -0.31 0.28 16 33 H 0.02 0.46 6.64 -51.93 -0.34 0.12 16 34 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.52 6.53 -51.92 -0.34 0.18 16 38 H 0.07 0.82 6.63 -51.93 -0.34 0.48 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -31.48 293.26 -7.02 -38.50 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.75 Total: 1.93 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.21 Total: -4.21 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.56 Total: -45.66 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.10 Total: -11.28 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.48 -7.02 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930830926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.254 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds