Wall clock time and date at job start Sun Mar 29 2020 23:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.30500 * 2 1 4 4 C 1.50258 * 109.38745 * 240.25636 * 2 1 3 5 5 O 1.21280 * 118.62637 * 42.64329 * 4 2 1 6 6 N 1.33714 * 122.75127 * 222.64657 * 4 2 1 7 7 C 1.46014 * 122.92853 * 1.68804 * 6 4 2 8 8 H 1.08993 * 109.37579 * 102.01515 * 7 6 4 9 9 C 1.53003 * 109.27855 * 221.72276 * 7 6 4 10 10 C 1.52976 * 110.03960 * 341.83440 * 7 6 4 11 11 H 1.08999 * 109.60194 * 290.51909 * 10 7 6 12 12 C 1.53002 * 109.71840 * 170.14234 * 10 7 6 13 13 N 1.46906 * 109.38689 * 119.74270 * 2 1 3 14 14 C 1.46896 * 110.99959 * 47.08233 * 13 2 1 15 15 C 1.53007 * 109.47410 * 274.00009 * 14 13 2 16 16 C 1.50700 * 109.47290 * 185.69653 * 15 14 13 17 17 H 1.07995 * 119.99668 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99700 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00286 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99615 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47617 * 59.99618 * 20 18 16 22 22 H 1.48498 * 109.47030 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47291 * 299.99705 * 20 18 16 24 24 H 1.09003 * 109.47476 * 295.23632 * 1 2 3 25 25 H 1.08998 * 109.46829 * 55.23207 * 1 2 3 26 26 H 1.08998 * 109.47573 * 175.22921 * 1 2 3 27 27 H 0.97006 * 118.53952 * 181.70795 * 6 4 2 28 28 H 1.09004 * 109.46949 * 180.52100 * 9 7 6 29 29 H 1.08995 * 109.47205 * 300.51937 * 9 7 6 30 30 H 1.09003 * 109.47237 * 60.52055 * 9 7 6 31 31 H 1.09000 * 109.47233 * 300.68500 * 12 10 7 32 32 H 1.08996 * 109.47291 * 60.68017 * 12 10 7 33 33 H 1.09002 * 109.46957 * 180.68709 * 12 10 7 34 34 H 1.08997 * 109.47162 * 34.00141 * 14 13 2 35 35 H 1.09001 * 109.47451 * 154.00354 * 14 13 2 36 36 H 1.09000 * 109.46832 * 305.70311 * 15 14 13 37 37 H 1.09000 * 109.46835 * 65.69771 * 15 14 13 38 38 H 0.97002 * 120.00260 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0287 -0.7032 -1.2306 5 8 1.4829 -0.4779 -2.2900 6 7 3.0491 -1.5670 -1.2067 7 6 3.7496 -1.9342 0.0207 8 1 3.4059 -2.9134 0.3540 9 6 5.2537 -1.9906 -0.2536 10 6 3.4713 -0.8996 1.1126 11 1 3.9628 0.0399 0.8601 12 6 3.9998 -1.4105 2.4545 13 7 2.0176 -0.6875 1.2032 14 6 1.3114 -1.9596 1.4053 15 6 0.0178 -1.7071 2.1823 16 6 -0.6360 -3.0245 2.5112 17 1 -0.1747 -3.9493 2.1978 18 6 -1.8229 -3.0490 3.2123 19 7 -2.3843 -1.9228 3.5944 20 14 -2.6329 -4.6820 3.6206 21 1 -1.7100 -5.4990 4.4489 22 1 -3.8885 -4.4369 4.3746 23 1 -2.9438 -5.4084 2.3633 24 1 -0.3634 0.4381 0.9296 25 1 -0.3633 0.5860 -0.8442 26 1 -0.3634 -1.0241 -0.0855 27 1 3.3371 -1.9674 -2.0421 28 1 5.7791 -2.2735 0.6586 29 1 5.4539 -2.7273 -1.0315 30 1 5.5999 -1.0109 -0.5833 31 1 3.5110 -2.3526 2.7027 32 1 5.0762 -1.5670 2.3853 33 1 3.7886 -0.6759 3.2316 34 1 1.0736 -2.4009 0.4374 35 1 1.9468 -2.6423 1.9696 36 1 0.2465 -1.1745 3.1054 37 1 -0.6597 -1.1070 1.5748 38 1 -3.2192 -1.9400 4.0879 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930830934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:19 Heat of formation + Delta-G solvation = -28.496358 kcal Electronic energy + Delta-G solvation = -18506.024408 eV Core-core repulsion = 15769.567455 eV Total energy + Delta-G solvation = -2736.456953 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84335 -37.59602 -35.55422 -33.00013 -32.43557 -30.10521 -29.80857 -27.68439 -25.10732 -24.00168 -22.71488 -21.40821 -20.69455 -18.14276 -17.02889 -16.59455 -16.29962 -15.66969 -15.09860 -14.54534 -14.30361 -13.94072 -13.49586 -13.06180 -12.90944 -12.27872 -12.26222 -11.95448 -11.75879 -11.69953 -11.61651 -11.25376 -11.06636 -10.96441 -10.78356 -10.65293 -10.53780 -10.05202 -9.62547 -9.42335 -9.02577 -8.92834 -8.25315 -7.81991 -5.97492 -3.99096 2.81970 3.29437 3.33729 3.38689 3.40594 4.15275 4.49258 4.53441 4.80684 4.92369 5.03213 5.25282 5.38481 5.38856 5.46364 5.51118 5.67718 5.71837 5.82246 5.90076 6.05034 6.14101 6.30126 6.31264 6.42211 6.50780 6.81936 6.88290 6.99733 7.27858 7.36387 7.46280 7.77892 7.93675 8.10387 8.36949 8.45007 9.07520 9.63662 11.13543 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.007168 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.244439 B = 3905.090827 C = 4302.682682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.106 0.894 4 C 0.494 3.506 5 O -0.556 6.556 6 N -0.720 5.720 7 C 0.102 3.898 8 H 0.079 0.921 9 C -0.160 4.160 10 C 0.068 3.932 11 H 0.084 0.916 12 C -0.141 4.141 13 N -0.516 5.516 14 C 0.054 3.946 15 C 0.013 3.987 16 C -0.523 4.523 17 H 0.050 0.950 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.392 0.608 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.026 0.974 35 H 0.064 0.936 36 H 0.024 0.976 37 H 0.041 0.959 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.319 1.773 -4.860 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 H 0.124 0.876 4 C 0.280 3.720 5 O -0.433 6.433 6 N -0.373 5.373 7 C -0.004 4.004 8 H 0.097 0.903 9 C -0.218 4.218 10 C -0.041 4.041 11 H 0.102 0.898 12 C -0.199 4.199 13 N -0.240 5.240 14 C -0.072 4.072 15 C -0.024 4.024 16 C -0.562 4.562 17 H 0.068 0.932 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.228 0.772 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.682 2.376 -4.686 14.656 hybrid contribution -0.073 -1.743 -0.773 1.908 sum 13.608 0.633 -5.460 14.676 Atomic orbital electron populations 1.22112 0.90610 1.04051 1.02790 1.21911 0.98707 0.98442 0.84720 0.87634 1.21543 0.78946 0.79047 0.92469 1.90694 1.56340 1.63924 1.32297 1.45802 1.34584 1.46104 1.10760 1.21827 0.92633 1.00271 0.85695 0.90330 1.22150 0.94654 1.02411 1.02614 1.22105 0.90324 0.97227 0.94458 0.89828 1.21839 0.99683 1.02637 0.95750 1.62907 1.01972 1.24935 1.34195 1.22549 0.98054 0.87609 0.99008 1.19564 0.89840 0.97123 0.95839 1.21162 1.06755 0.92780 1.35468 0.93202 1.24941 0.97160 0.96073 0.95930 1.69947 1.18816 1.25620 1.38715 0.86718 0.78797 0.84368 0.78449 1.20349 1.21270 1.20377 0.89488 0.92266 0.90674 0.77202 0.90616 0.92327 0.92059 0.91513 0.92291 0.90982 0.95617 0.91754 0.95760 0.94069 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.03 37.15 0.26 -2.32 16 2 C 0.07 1.25 2.99 -69.08 -0.21 1.04 16 3 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 4 C 0.49 8.50 6.45 -11.67 -0.08 8.42 16 5 O -0.56 -11.28 17.16 5.56 0.10 -11.19 16 6 N -0.72 -10.06 5.11 -54.55 -0.28 -10.34 16 7 C 0.10 1.23 2.54 -68.20 -0.17 1.06 16 8 H 0.08 1.03 7.14 -51.93 -0.37 0.66 16 9 C -0.16 -1.38 9.25 37.16 0.34 -1.03 16 10 C 0.07 0.89 2.24 -67.57 -0.15 0.74 16 11 H 0.08 1.00 8.05 -51.93 -0.42 0.59 16 12 C -0.14 -1.67 8.99 37.16 0.33 -1.33 16 13 N -0.52 -8.70 4.60 -220.14 -1.01 -9.71 16 14 C 0.05 1.08 3.01 -3.82 -0.01 1.07 16 15 C 0.01 0.34 4.51 -27.88 -0.13 0.21 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 17 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 20 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.09 1.70 6.89 -51.93 -0.36 1.34 16 25 H 0.06 1.04 7.97 -51.93 -0.41 0.62 16 26 H 0.07 1.60 5.72 -51.93 -0.30 1.30 16 27 H 0.39 4.95 8.74 -40.82 -0.36 4.59 16 28 H 0.07 0.56 6.77 -51.93 -0.35 0.21 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.88 6.24 -51.93 -0.32 0.56 16 32 H 0.06 0.53 6.79 -51.93 -0.35 0.17 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.54 6.38 -51.93 -0.33 0.21 16 35 H 0.06 1.24 5.43 -51.93 -0.28 0.96 16 36 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 1.07 4.13 -51.93 -0.21 0.85 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 289.61 15.07 4.36 4.36 Total: -1.00 -31.30 289.61 -7.06 -38.36 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.73 Total: 3.01 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.22 Total: -5.34 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.56 Total: -45.73 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.10 Total: -11.19 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.30 -7.06 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930830934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.862 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds