Wall clock time and date at job start Sun Mar 29 2020 23:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.30500 * 2 1 4 4 C 1.50258 * 109.38745 * 240.25636 * 2 1 3 5 5 O 1.21280 * 118.62637 * 42.64329 * 4 2 1 6 6 N 1.33714 * 122.75127 * 222.64657 * 4 2 1 7 7 C 1.46014 * 122.92853 * 1.68804 * 6 4 2 8 8 H 1.08993 * 109.37579 * 102.01515 * 7 6 4 9 9 C 1.53003 * 109.27855 * 221.72276 * 7 6 4 10 10 C 1.52976 * 110.03960 * 341.83440 * 7 6 4 11 11 H 1.08999 * 109.60194 * 290.51909 * 10 7 6 12 12 C 1.53002 * 109.71840 * 170.14234 * 10 7 6 13 13 N 1.46906 * 109.38689 * 119.74270 * 2 1 3 14 14 C 1.46896 * 110.99959 * 47.08233 * 13 2 1 15 15 C 1.53007 * 109.47410 * 274.00009 * 14 13 2 16 16 C 1.50700 * 109.47290 * 185.69653 * 15 14 13 17 17 H 1.07995 * 119.99668 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99700 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00286 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99615 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47617 * 59.99618 * 20 18 16 22 22 H 1.48498 * 109.47030 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47291 * 299.99705 * 20 18 16 24 24 H 1.09003 * 109.47476 * 295.23632 * 1 2 3 25 25 H 1.08998 * 109.46829 * 55.23207 * 1 2 3 26 26 H 1.08998 * 109.47573 * 175.22921 * 1 2 3 27 27 H 0.97006 * 118.53952 * 181.70795 * 6 4 2 28 28 H 1.09004 * 109.46949 * 180.52100 * 9 7 6 29 29 H 1.08995 * 109.47205 * 300.51937 * 9 7 6 30 30 H 1.09003 * 109.47237 * 60.52055 * 9 7 6 31 31 H 1.09000 * 109.47233 * 300.68500 * 12 10 7 32 32 H 1.08996 * 109.47291 * 60.68017 * 12 10 7 33 33 H 1.09002 * 109.46957 * 180.68709 * 12 10 7 34 34 H 1.08997 * 109.47162 * 34.00141 * 14 13 2 35 35 H 1.09001 * 109.47451 * 154.00354 * 14 13 2 36 36 H 1.09000 * 109.46832 * 305.70311 * 15 14 13 37 37 H 1.09000 * 109.46835 * 65.69771 * 15 14 13 38 38 H 0.97002 * 120.00260 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0287 -0.7032 -1.2306 5 8 1.4829 -0.4779 -2.2900 6 7 3.0491 -1.5670 -1.2067 7 6 3.7496 -1.9342 0.0207 8 1 3.4059 -2.9134 0.3540 9 6 5.2537 -1.9906 -0.2536 10 6 3.4713 -0.8996 1.1126 11 1 3.9628 0.0399 0.8601 12 6 3.9998 -1.4105 2.4545 13 7 2.0176 -0.6875 1.2032 14 6 1.3114 -1.9596 1.4053 15 6 0.0178 -1.7071 2.1823 16 6 -0.6360 -3.0245 2.5112 17 1 -0.1747 -3.9493 2.1978 18 6 -1.8229 -3.0490 3.2123 19 7 -2.3843 -1.9228 3.5944 20 14 -2.6329 -4.6820 3.6206 21 1 -1.7100 -5.4990 4.4489 22 1 -3.8885 -4.4369 4.3746 23 1 -2.9438 -5.4084 2.3633 24 1 -0.3634 0.4381 0.9296 25 1 -0.3633 0.5860 -0.8442 26 1 -0.3634 -1.0241 -0.0855 27 1 3.3371 -1.9674 -2.0421 28 1 5.7791 -2.2735 0.6586 29 1 5.4539 -2.7273 -1.0315 30 1 5.5999 -1.0109 -0.5833 31 1 3.5110 -2.3526 2.7027 32 1 5.0762 -1.5670 2.3853 33 1 3.7886 -0.6759 3.2316 34 1 1.0736 -2.4009 0.4374 35 1 1.9468 -2.6423 1.9696 36 1 0.2465 -1.1745 3.1054 37 1 -0.6597 -1.1070 1.5748 38 1 -3.2192 -1.9400 4.0879 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930830934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:18 Heat of formation + Delta-G solvation = -51.945118 kcal Electronic energy + Delta-G solvation = -18507.041223 eV Core-core repulsion = 15769.567455 eV Total energy + Delta-G solvation = -2737.473767 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.13547 -38.95288 -36.88558 -35.00051 -33.66226 -31.91871 -30.98587 -28.89169 -26.98293 -25.09253 -24.10215 -23.04694 -22.02993 -19.49638 -18.43446 -18.29305 -17.73540 -17.07973 -16.58375 -16.25696 -15.76794 -15.33419 -14.67367 -14.32319 -14.13957 -13.91905 -13.46652 -13.40642 -13.15854 -12.98705 -12.85778 -12.74186 -12.63503 -12.47351 -12.32475 -12.14862 -11.93477 -11.59030 -11.39997 -11.22955 -10.95670 -10.39373 -10.18697 -9.19387 -8.14725 -6.23698 1.40429 1.42517 1.46685 1.50165 2.12096 2.42215 2.90173 3.18834 3.40929 3.67978 3.87780 3.98501 4.13466 4.26826 4.34322 4.47601 4.54781 4.57997 4.75747 4.82582 4.91608 4.97201 5.00559 5.10575 5.15413 5.26831 5.30320 5.41709 5.55971 5.67186 5.78447 5.88033 6.08111 6.12050 6.24001 6.34244 6.93671 7.08904 7.43453 8.96501 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.007168 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.244439 B = 3905.090827 C = 4302.682682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.075 3.925 3 H 0.130 0.870 4 C 0.492 3.508 5 O -0.593 6.593 6 N -0.708 5.708 7 C 0.101 3.899 8 H 0.070 0.930 9 C -0.151 4.151 10 C 0.065 3.935 11 H 0.104 0.896 12 C -0.137 4.137 13 N -0.525 5.525 14 C 0.077 3.923 15 C 0.019 3.981 16 C -0.542 4.542 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.956 3.044 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.401 0.599 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.013 0.987 35 H 0.072 0.928 36 H -0.005 1.005 37 H 0.026 0.974 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.539 0.898 -4.952 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.037 4.037 3 H 0.147 0.853 4 C 0.278 3.722 5 O -0.474 6.474 6 N -0.360 5.360 7 C -0.005 4.005 8 H 0.088 0.912 9 C -0.209 4.209 10 C -0.044 4.044 11 H 0.122 0.878 12 C -0.195 4.195 13 N -0.249 5.249 14 C -0.050 4.050 15 C -0.018 4.018 16 C -0.581 4.581 17 H 0.071 0.929 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.781 3.219 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.238 0.762 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.090 0.910 36 H 0.013 0.987 37 H 0.044 0.956 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.956 1.477 -4.769 16.719 hybrid contribution -0.727 -1.442 -0.733 1.773 sum 15.229 0.036 -5.502 16.193 Atomic orbital electron populations 1.21912 0.92531 1.01895 1.02244 1.21897 0.97186 0.99766 0.84819 0.85292 1.21516 0.79379 0.79508 0.91779 1.90677 1.57797 1.65534 1.33357 1.45783 1.33480 1.44658 1.12047 1.21961 0.94977 0.99165 0.84388 0.91194 1.22106 0.91394 1.03362 1.04040 1.22330 0.87507 0.98774 0.95768 0.87814 1.21836 1.01833 1.01269 0.94525 1.62791 1.04376 1.23213 1.34478 1.22071 0.96258 0.89184 0.97463 1.19428 0.92054 0.95537 0.94808 1.21615 1.07221 0.93929 1.35304 0.92885 1.25819 0.97885 0.99716 0.95846 1.70079 1.19277 1.27912 1.39538 0.85647 0.77875 0.79967 0.78425 1.19097 1.20894 1.19775 0.90973 0.91495 0.93817 0.76176 0.88675 0.91209 0.91300 0.93231 0.88537 0.91851 0.96901 0.90951 0.98701 0.95593 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 7.03 71.98 0.51 -4.47 16 2 C 0.07 2.49 2.99 44.03 0.13 2.62 16 3 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 4 C 0.49 16.55 6.45 87.68 0.57 17.11 16 5 O -0.59 -24.03 17.16 -3.03 -0.05 -24.08 16 6 N -0.71 -18.48 5.11 -445.47 -2.28 -20.76 16 7 C 0.10 2.15 2.54 45.08 0.11 2.26 16 8 H 0.07 1.67 7.14 -2.39 -0.02 1.65 16 9 C -0.15 -1.96 9.25 71.98 0.67 -1.29 16 10 C 0.06 1.52 2.24 44.85 0.10 1.62 16 11 H 0.10 2.11 8.05 -2.39 -0.02 2.09 16 12 C -0.14 -2.87 8.99 71.98 0.65 -2.22 16 13 N -0.52 -17.37 4.60 -850.40 -3.91 -21.28 16 14 C 0.08 3.11 3.01 86.31 0.26 3.37 16 15 C 0.02 0.98 4.51 29.85 0.13 1.12 16 16 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 17 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 18 C 0.01 0.31 5.46 84.65 0.46 0.77 16 19 N -0.93 -56.25 13.29 21.44 0.28 -55.97 16 20 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H 0.07 2.96 6.89 -2.39 -0.02 2.95 16 25 H 0.07 2.42 7.97 -2.39 -0.02 2.40 16 26 H 0.04 1.94 5.72 -2.39 -0.01 1.93 16 27 H 0.40 9.30 8.74 -92.70 -0.81 8.49 16 28 H 0.09 0.92 6.77 -2.38 -0.02 0.90 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.22 6.24 -2.39 -0.01 1.20 16 32 H 0.10 1.30 6.79 -2.39 -0.02 1.28 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.01 0.54 6.38 -2.39 -0.02 0.53 16 35 H 0.07 2.78 5.43 -2.39 -0.01 2.76 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.03 1.41 4.13 -2.39 -0.01 1.40 16 38 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -69.09 289.61 0.14 -68.95 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.25 Total: 16.18 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 3.82 Total: -9.46 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -5.90 Total: -98.01 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.09 0.14 -68.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930830934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.005 kcal (2) G-P(sol) polarization free energy of solvation -69.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds