Wall clock time and date at job start Sun Mar 29 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46713 * 2 1 4 4 O 1.21277 * 120.00427 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99704 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99798 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.46244 * 324.99501 * 6 5 3 8 8 C 1.53038 * 109.46021 * 84.97010 * 6 5 3 9 9 C 1.53195 * 109.31243 * 181.38514 * 8 6 5 10 10 N 1.46921 * 108.77489 * 305.36682 * 9 8 6 11 11 C 1.36941 * 120.62946 * 233.62889 * 10 9 8 12 12 H 1.08007 * 120.00153 * 151.83811 * 11 10 9 13 13 C 1.38812 * 119.99962 * 331.83921 * 11 10 9 14 14 N 1.31613 * 120.00132 * 343.06174 * 13 11 10 15 15 Si 1.86803 * 120.00131 * 163.06854 * 13 11 10 16 16 H 1.48491 * 109.47308 * 89.99559 * 15 13 11 17 17 H 1.48494 * 109.47198 * 210.00339 * 15 13 11 18 18 H 1.48504 * 109.47014 * 329.99571 * 15 13 11 19 19 C 1.46920 * 118.74210 * 53.60541 * 10 9 8 20 20 C 1.53042 * 109.45883 * 205.02376 * 6 5 3 21 21 H 1.08997 * 109.49725 * 298.56158 * 20 6 5 22 22 C 1.52992 * 109.49745 * 58.66285 * 20 6 5 23 23 H 1.09000 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47491 * 60.00435 * 1 2 3 25 25 H 1.09002 * 109.47142 * 299.99630 * 1 2 3 26 26 H 1.09000 * 109.47213 * 120.00037 * 2 1 3 27 27 H 1.09002 * 109.47142 * 240.00370 * 2 1 3 28 28 H 0.96993 * 120.00262 * 359.97438 * 5 3 2 29 29 H 1.08995 * 109.49922 * 301.33217 * 8 6 5 30 30 H 1.08996 * 109.50078 * 61.43671 * 8 6 5 31 31 H 1.09006 * 109.58888 * 65.15173 * 9 8 6 32 32 H 1.08997 * 109.58872 * 185.43112 * 9 8 6 33 33 H 0.96996 * 120.00346 * 180.02562 * 14 13 11 34 34 H 1.09006 * 109.58722 * 66.17963 * 19 10 9 35 35 H 1.09002 * 109.58918 * 186.46219 * 19 10 9 36 36 H 1.09007 * 109.47339 * 59.99934 * 22 20 6 37 37 H 1.09000 * 109.47642 * 180.02562 * 22 20 6 38 38 H 1.09003 * 109.47191 * 299.99807 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8456 3.0484 0.0000 7 1 3.1727 3.6717 -0.5888 8 6 3.8970 3.5704 1.4377 9 6 4.3749 5.0259 1.4315 10 7 5.6563 5.0998 0.7165 11 6 6.7510 5.6756 1.3042 12 1 7.7442 5.3539 1.0276 13 6 6.5841 6.6726 2.2555 14 7 5.4305 7.2979 2.3581 15 14 7.9968 7.1270 3.3901 16 1 8.8069 8.2032 2.7654 17 1 7.4555 7.6046 4.6878 18 1 8.8510 5.9340 3.6193 19 6 5.7411 4.5438 -0.6408 20 6 5.2480 3.0937 -0.6110 21 1 5.9271 2.4907 -0.0083 22 6 5.2018 2.5409 -2.0368 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.9877 0.9300 -0.0005 29 1 2.9024 3.5161 1.8803 30 1 4.5889 2.9629 2.0209 31 1 3.6380 5.6504 0.9262 32 1 4.5056 5.3720 2.4567 33 1 5.3140 7.9948 3.0225 34 1 5.1156 5.1288 -1.3151 35 1 6.7753 4.5733 -0.9838 36 1 4.5236 3.1455 -2.6392 37 1 6.2009 2.5729 -2.4716 38 1 4.8481 1.5101 -2.0156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941692984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:21 Heat of formation + Delta-G solvation = -35.438114 kcal Electronic energy + Delta-G solvation = -18002.899200 eV Core-core repulsion = 15266.141230 eV Total energy + Delta-G solvation = -2736.757970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.75242 -37.65963 -34.49612 -32.89096 -32.41396 -31.14875 -29.74661 -25.94494 -25.47199 -23.85793 -21.90815 -20.94963 -20.06432 -19.14959 -17.00053 -16.56679 -15.81832 -15.42874 -14.76815 -14.05093 -13.85472 -13.70365 -13.33516 -13.09690 -12.85852 -12.65676 -12.23906 -12.04753 -11.77741 -11.47181 -11.28212 -11.20564 -11.04517 -10.79275 -10.62305 -10.31906 -10.22883 -9.98851 -9.76217 -9.73291 -9.36467 -8.63863 -8.39787 -6.66502 -5.77425 -3.20515 2.88535 3.37833 3.45174 3.46744 3.47995 4.50036 4.82073 5.03452 5.04728 5.17125 5.33065 5.42004 5.51339 5.52322 5.64144 5.70977 5.87688 5.93769 6.00320 6.12657 6.16370 6.27413 6.29809 6.43892 6.46974 6.64615 6.69279 6.80669 6.98073 6.99319 7.39287 7.69118 7.80036 7.80539 8.45937 8.50725 9.22083 9.85551 10.42435 11.31160 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.005870 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.606870 B = 4768.730714 C = 5173.586436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.505 3.495 4 O -0.543 6.543 5 N -0.725 5.725 6 C 0.156 3.844 7 H 0.080 0.920 8 C -0.147 4.147 9 C 0.174 3.826 10 N -0.592 5.592 11 C -0.255 4.255 12 H 0.065 0.935 13 C 0.003 3.997 14 N -0.901 5.901 15 Si 0.902 3.098 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.155 3.845 20 C -0.115 4.115 21 H 0.070 0.930 22 C -0.141 4.141 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.394 0.606 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.089 0.911 33 H 0.254 0.746 34 H 0.020 0.980 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -14.713 -5.330 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.185 4.185 3 C 0.291 3.709 4 O -0.420 6.420 5 N -0.375 5.375 6 C 0.052 3.948 7 H 0.098 0.902 8 C -0.187 4.187 9 C 0.047 3.953 10 N -0.315 5.315 11 C -0.385 4.385 12 H 0.083 0.917 13 C -0.195 4.195 14 N -0.545 5.545 15 Si 0.731 3.269 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.205 1.205 19 C 0.027 3.973 20 C -0.135 4.135 21 H 0.089 0.911 22 C -0.199 4.199 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.227 0.773 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.559 -13.876 -5.210 15.507 hybrid contribution 1.034 -0.110 0.659 1.231 sum -3.525 -13.986 -4.551 15.124 Atomic orbital electron populations 1.21509 0.93293 1.01147 1.03399 1.21638 0.98525 0.94469 1.03898 1.20707 0.82538 0.91509 0.76112 1.90704 1.55305 1.46519 1.49445 1.46335 1.06698 1.09578 1.74883 1.21034 0.94852 0.81063 0.97806 0.90162 1.22564 1.00098 1.01169 0.94882 1.20750 0.86038 0.89107 0.99378 1.44085 1.08997 1.67632 1.10745 1.19161 0.86426 1.13574 1.19335 0.91696 1.25053 0.96920 0.95951 1.01605 1.70032 1.24101 1.24557 1.35833 0.86317 0.81817 0.78240 0.80511 1.21377 1.21559 1.20504 1.20892 0.98583 0.89577 0.88214 1.21959 0.95556 1.00704 0.95327 0.91137 1.21765 1.01323 0.99997 0.96823 0.92445 0.92064 0.91986 0.89257 0.89349 0.77289 0.92885 0.92745 0.96194 0.89308 0.93576 0.96249 0.92424 0.92944 0.92793 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 37.16 0.34 -1.04 16 2 C -0.15 -1.43 6.42 -27.88 -0.18 -1.61 16 3 C 0.51 7.41 7.79 -10.99 -0.09 7.32 16 4 O -0.54 -10.44 15.64 5.56 0.09 -10.35 16 5 N -0.72 -10.12 4.36 -53.77 -0.23 -10.36 16 6 C 0.16 2.75 1.88 -67.89 -0.13 2.62 16 7 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 8 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 9 C 0.17 4.29 5.30 -3.71 -0.02 4.27 16 10 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 11 C -0.26 -7.01 9.58 -15.06 -0.14 -7.16 16 12 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 13 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 14 N -0.90 -26.51 11.19 55.49 0.62 -25.88 16 15 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.15 3.21 5.80 -3.71 -0.02 3.19 16 20 C -0.11 -1.91 2.46 -90.50 -0.22 -2.13 16 21 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 22 C -0.14 -1.89 9.02 37.15 0.34 -1.55 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.39 4.30 8.31 -40.82 -0.34 3.96 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 33 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 LS Contribution 304.19 15.07 4.58 4.58 Total: -1.00 -31.65 304.19 -7.31 -38.96 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.46 Total: 1.02 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.36 Total: 0.78 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.13 Total: -51.66 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.65 -7.31 -38.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941692984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.522 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds